Clone BO18359 Report

Search the DGRC for BO18359

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG31278-RA
Protein status:BO18359.pep: validated full length
Sequenced Size:748

Clone Sequence Records

BO18359.3prime Sequence

705 bp (703 high quality bases) assembled on 2006-10-13

> BO18359.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGAAGGGTATCTCCACGCGTCCGGATT
TCGTGTTAACCGCCTCCCAGCAGGTGCACGCAAAGGTTGAGCGGTCCATG
TGATCGGTGTATAGTTTTCCCTCCAGGTGATCCATTTCGTGCTGCGCTAT
CCGGGCATTCCAACCACTCAGAGCCAGTTCGCTTTGGTTTCCTAGTTGGT
CAAGGCCTGTTAGCTTTACACCTTCGAAACGCTCCACTTCGGCAGAGTAA
CCTCGCACACTCATGCATCCTTCTGGATGCTTCAGCTTCGCGTAGTTGGT
CACCGTCAGGACGGGATTGATGAAAATAGTCAGTGGCAACTCGGACATTT
GTCGGGCTTGGTAAACGGCCTCGGGCAGCTCCTTTCGGATCCGTCCCTTG
AACTCCATTGCTATGATCCTGAGCGATACTCCAATCTGAGGAGCCGCAAT
GCCGACGCAGTCGAACTTCCTTAGCACCTTGACCATCCGCTCGACGATGG
CCTTAATCTCGGGGCTAGCCATGTGCTCCTTGGGCACCAAAGCCGCTTGT
TGCCTAAGAACAGGGTCACCAATCTGGGTGAAATGGTTGTATGGCGGCAA
GTTTGTGCGCTCCGTGGTCCACAGGTGCTGGTACCACTTCCTGAACGACT
GATTAGCGGGAGGACTCGTTCCAAAGGATCGACAATGTCCCCAGAATCGC
TTGGC

BO18359.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-PA 717 CG31278-RA 42..714 691..19 3365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-RA 872 CG31278-RA 107..792 705..19 3410 99.9 Minus
CG31278-RB 883 CG31278-RB 107..803 705..19 3290 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707858..10708234 328..705 1840 99.7 Plus
3R 32079331 3R 10707478..10707786 19..327 1545 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:51:25 has no hits.

BO18359.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:46 Download gff for BO18359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-PA 29..717 18..705 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:07 Download gff for BO18359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 107..797 11..705 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:45 Download gff for BO18359.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 107..797 11..705 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:45 Download gff for BO18359.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707473..10707786 11..327 98 <- Plus
3R 10707858..10708234 328..705 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:07 Download gff for BO18359.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6533195..6533508 11..327 98 <- Plus
arm_3R 6533580..6533956 328..705 99   Plus

BO18359.5prime Sequence

742 bp (740 high quality bases) assembled on 2006-10-13

> BO18359.5prime
GAAGTTATCAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGGCAAGCTTTCTA

BO18359.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-PA 717 CG31278-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-RA 872 CG31278-RA 79..792 17..730 3570 100 Plus
CG31278-RB 883 CG31278-RB 79..803 17..730 3450 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707858..10708262 421..17 2025 100 Minus
3R 32079331 3R 10707478..10707786 730..422 1545 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:48:15 has no hits.

BO18359.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:47 Download gff for BO18359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-PA 1..717 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:59 Download gff for BO18359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 72..797 8..738 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:57 Download gff for BO18359.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 72..797 8..738 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:57 Download gff for BO18359.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10707473..10707786 422..738 98 <- Minus
3R 10707858..10708269 8..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:59 Download gff for BO18359.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6533195..6533508 422..738 98 <- Minus
arm_3R 6533580..6533991 8..421 99   Minus

BO18359.complete Sequence

748 bp assembled on 2006-10-11

GenBank Submission: FJ634391

> BO18359.complete
GAAGTTATCAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGGCAAGCTTTCTAGACCAT

BO18359.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-RA 717 CG31278-PA 1..714 17..730 3570 100 Plus
CG31278-RB 438 CG31278-PB 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-RA 872 CG31278-RA 79..792 17..730 3570 100 Plus
CG31278-RB 883 CG31278-RB 79..803 17..730 3425 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10707858..10708262 421..17 2025 100 Minus
3R 32079331 3R 10707478..10707786 730..422 1545 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:48:59 has no hits.

BO18359.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:56 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 1..717 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:56 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 58..783 8..738 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:27 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 79..792 17..732 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:56 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 58..783 8..738 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:16 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
CG31278-RA 79..792 17..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:16 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10707476..10707786 422..732 99 <- Minus
3R 10707858..10708262 17..421 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:27 Download gff for BO18359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6533198..6533508 422..732 99 <- Minus
arm_3R 6533580..6533984 17..421 100   Minus

BO18359.pep Sequence

Translation from 16 to 748

> BO18359.pep
MHLKPRIKVCQAILGHCRSFGTSPPANQSFRKWYQHLWTTERTNLPPYNH
FTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQI
GVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKL
KHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM
DHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFYKASFLDH

BO18359.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31278-PA 238 CG31278-PA 1..238 1..238 1264 100 Plus
CG31278-PB 145 CG31278-PB 1..136 1..136 714 99.3 Plus
CG31373-PA 196 CG31373-PA 4..196 46..238 602 58 Plus