Clone Sequence Records
BO18359.3prime Sequence
705 bp (703 high quality bases) assembled on 2006-10-13
> BO18359.3prime
ATGGTCTAGAAAGCTTGCCTTGTAGAAGGGTATCTCCACGCGTCCGGATT
TCGTGTTAACCGCCTCCCAGCAGGTGCACGCAAAGGTTGAGCGGTCCATG
TGATCGGTGTATAGTTTTCCCTCCAGGTGATCCATTTCGTGCTGCGCTAT
CCGGGCATTCCAACCACTCAGAGCCAGTTCGCTTTGGTTTCCTAGTTGGT
CAAGGCCTGTTAGCTTTACACCTTCGAAACGCTCCACTTCGGCAGAGTAA
CCTCGCACACTCATGCATCCTTCTGGATGCTTCAGCTTCGCGTAGTTGGT
CACCGTCAGGACGGGATTGATGAAAATAGTCAGTGGCAACTCGGACATTT
GTCGGGCTTGGTAAACGGCCTCGGGCAGCTCCTTTCGGATCCGTCCCTTG
AACTCCATTGCTATGATCCTGAGCGATACTCCAATCTGAGGAGCCGCAAT
GCCGACGCAGTCGAACTTCCTTAGCACCTTGACCATCCGCTCGACGATGG
CCTTAATCTCGGGGCTAGCCATGTGCTCCTTGGGCACCAAAGCCGCTTGT
TGCCTAAGAACAGGGTCACCAATCTGGGTGAAATGGTTGTATGGCGGCAA
GTTTGTGCGCTCCGTGGTCCACAGGTGCTGGTACCACTTCCTGAACGACT
GATTAGCGGGAGGACTCGTTCCAAAGGATCGACAATGTCCCCAGAATCGC
TTGGC
BO18359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 717 | CG31278-RA | 42..714 | 691..19 | 3365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 107..792 | 705..19 | 3410 | 99.9 | Minus |
CG31278-RB | 883 | CG31278-RB | 107..803 | 705..19 | 3290 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708234 | 328..705 | 1840 | 99.7 | Plus |
3R | 32079331 | 3R | 10707478..10707786 | 19..327 | 1545 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:51:25 has no hits.
BO18359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:46 Download gff for
BO18359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-PA | 29..717 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:07 Download gff for
BO18359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 107..797 | 11..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:45 Download gff for
BO18359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 107..797 | 11..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:45 Download gff for
BO18359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707473..10707786 | 11..327 | 98 | <- | Plus |
3R | 10707858..10708234 | 328..705 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:07 Download gff for
BO18359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533195..6533508 | 11..327 | 98 | <- | Plus |
arm_3R | 6533580..6533956 | 328..705 | 99 | | Plus |
BO18359.5prime Sequence
742 bp (740 high quality bases) assembled on 2006-10-13
> BO18359.5prime
GAAGTTATCAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGGCAAGCTTTCTA
BO18359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 717 | CG31278-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 79..792 | 17..730 | 3570 | 100 | Plus |
CG31278-RB | 883 | CG31278-RB | 79..803 | 17..730 | 3450 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708262 | 421..17 | 2025 | 100 | Minus |
3R | 32079331 | 3R | 10707478..10707786 | 730..422 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:48:15 has no hits.
BO18359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:47 Download gff for
BO18359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-PA | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:59 Download gff for
BO18359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 72..797 | 8..738 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:57 Download gff for
BO18359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 72..797 | 8..738 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:57 Download gff for
BO18359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707473..10707786 | 422..738 | 98 | <- | Minus |
3R | 10707858..10708269 | 8..421 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:59 Download gff for
BO18359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533195..6533508 | 422..738 | 98 | <- | Minus |
arm_3R | 6533580..6533991 | 8..421 | 99 | | Minus |
BO18359.complete Sequence
748 bp assembled on 2006-10-11
GenBank Submission: FJ634391
> BO18359.complete
GAAGTTATCAGTCGACATGCACCTGAAACCACGGATAAAAGTATGCCAAG
CGATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAG
TCGTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTT
GCCGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAAC
AAGCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCC
ATCGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCAT
TGCGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCA
AGGGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAA
ATGTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGAC
CAACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTT
ACTCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGAC
CAACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGAT
AGCGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACA
TGGACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAA
TCCGGACGCGTGGAGATACCCTTCTACAAGGCAAGCTTTCTAGACCAT
BO18359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 717 | CG31278-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG31278-RB | 438 | CG31278-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-RA | 872 | CG31278-RA | 79..792 | 17..730 | 3570 | 100 | Plus |
CG31278-RB | 883 | CG31278-RB | 79..803 | 17..730 | 3425 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10707858..10708262 | 421..17 | 2025 | 100 | Minus |
3R | 32079331 | 3R | 10707478..10707786 | 730..422 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:59 has no hits.
BO18359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:56 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:56 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 58..783 | 8..738 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:27 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 79..792 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:56 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 58..783 | 8..738 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:16 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31278-RA | 79..792 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:16 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10707476..10707786 | 422..732 | 99 | <- | Minus |
3R | 10707858..10708262 | 17..421 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:27 Download gff for
BO18359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6533198..6533508 | 422..732 | 99 | <- | Minus |
arm_3R | 6533580..6533984 | 17..421 | 100 | | Minus |
BO18359.pep Sequence
Translation from 16 to 748
> BO18359.pep
MHLKPRIKVCQAILGHCRSFGTSPPANQSFRKWYQHLWTTERTNLPPYNH
FTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQI
GVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKL
KHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM
DHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFYKASFLDH
BO18359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31278-PA | 238 | CG31278-PA | 1..238 | 1..238 | 1264 | 100 | Plus |
CG31278-PB | 145 | CG31278-PB | 1..136 | 1..136 | 714 | 99.3 | Plus |
CG31373-PA | 196 | CG31373-PA | 4..196 | 46..238 | 602 | 58 | Plus |