Clone Sequence Records
BO18360.5prime Sequence
482 bp (482 high quality bases) assembled on 2006-10-13
> BO18360.5prime
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCATCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCGCAAGCTTTCTAGACC
BO18360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PA | 453 | CG13102-RA | 1..450 | 17..466 | 2225 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..526 | 17..466 | 2235 | 99.8 | Plus |
CG13102-RA | 576 | CG13102-RA | 77..526 | 17..466 | 2235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012840 | 252..466 | 1060 | 99.5 | Plus |
2L | 23513712 | 2L | 9012384..9012561 | 74..251 | 890 | 100 | Plus |
2L | 23513712 | 2L | 9012264..9012325 | 17..78 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:31 has no hits.
BO18360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:48 Download gff for
BO18360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-PA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:53 Download gff for
BO18360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:58 Download gff for
BO18360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 17..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:58 Download gff for
BO18360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
2L | 9012626..9012840 | 252..466 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:53 Download gff for
BO18360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
arm_2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
arm_2L | 9012626..9012840 | 252..466 | 99 | | Plus |
BO18360.3prime Sequence
482 bp (482 high quality bases) assembled on 2006-10-13
> BO18360.3prime
ATGGTCTAGAAAGCTTGCGGCATACATCTTGACCAGCAAGAGACCCAGAA
CGCTAGACGCGATGGCAATAGTGCTGCTGCTCATCTTTCCGGCCGGATTC
TTGTTGCACTTGTCGCCCGAACAGGTGAGACACCAGGTCTTATTGTAGTG
AGCATAGGCCGGCTTAAGTGCTAAGCTGCAGGCTCCAACATTTGGATGCA
CACAGCCATGGAGCTGATGGATCACATCGTTATTCCAGTTGTACTTCAAA
GCCAGGCAATCGAATCGCGTGCTGGTTAGGTTGCCAACATTCTGATGATA
GACACCCAGGTAGTAACTAGTCTCATTCGCAGCCGCATTCGTGCAGGTGA
CTTTCTTGGGACTCTTGCAGTCCTTTGGCGTTACGCAGGTGTAACACTTC
AGGGAATCAGCAATTTGCACACACACAAAGGCCACAAGTATGCTGACTAT
TAAAGCTTTCATATACATGTCGACTGATAACT
BO18360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PA | 453 | CG13102-RA | 1..450 | 468..19 | 2225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..526 | 468..19 | 2235 | 99.8 | Minus |
CG13102-RA | 576 | CG13102-RA | 77..526 | 468..19 | 2235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012840 | 233..19 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 9012384..9012561 | 411..234 | 875 | 99.4 | Minus |
2L | 23513712 | 2L | 9012264..9012325 | 468..407 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:02:52 has no hits.
BO18360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:47 Download gff for
BO18360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-PA | 1..453 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:07 Download gff for
BO18360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 19..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:13 Download gff for
BO18360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 19..468 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:13 Download gff for
BO18360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012385..9012561 | 234..410 | 99 | -> | Minus |
2L | 9012264..9012321 | 411..468 | 100 | -> | Minus |
2L | 9012626..9012840 | 19..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:07 Download gff for
BO18360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012264..9012321 | 411..468 | 100 | -> | Minus |
arm_2L | 9012385..9012561 | 234..410 | 99 | -> | Minus |
arm_2L | 9012626..9012840 | 19..233 | 100 | | Minus |
BO18360.complete Sequence
484 bp assembled on 2006-10-11
GenBank Submission: FJ634392
> BO18360.complete
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCGCAAGCTTTCTAGACCAT
BO18360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 453 | CG13102-PB | 1..450 | 17..466 | 2250 | 100 | Plus |
CG13102-RA | 453 | CG13102-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-RB | 1835 | CG13102-RB | 77..526 | 17..466 | 2250 | 100 | Plus |
CG13102-RA | 576 | CG13102-RA | 77..526 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9012626..9012840 | 252..466 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 9012384..9012561 | 74..251 | 890 | 100 | Plus |
2L | 23513712 | 2L | 9012264..9012325 | 17..78 | 295 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:28 has no hits.
BO18360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:57 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:57 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 72..521 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:34 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:58 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 72..521 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:42 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RA | 77..526 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:42 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
2L | 9012626..9012840 | 252..468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:34 Download gff for
BO18360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9012264..9012321 | 17..74 | 100 | -> | Plus |
arm_2L | 9012385..9012561 | 75..251 | 100 | -> | Plus |
arm_2L | 9012626..9012840 | 252..468 | 99 | | Plus |
BO18360.pep Sequence
Translation from 16 to 484
> BO18360.pep
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
ASFLDH
BO18360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13102-PB | 150 | CG13102-PB | 1..150 | 1..150 | 813 | 100 | Plus |
CG13102-PA | 150 | CG13102-PA | 1..150 | 1..150 | 813 | 100 | Plus |
CG9568-PA | 150 | CG9568-PA | 1..148 | 1..148 | 244 | 37.7 | Plus |