Clone BO18360 Report

Search the DGRC for BO18360

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG13102-RA
Protein status:BO18360.pep: validated full length
Sequenced Size:484

Clone Sequence Records

BO18360.5prime Sequence

482 bp (482 high quality bases) assembled on 2006-10-13

> BO18360.5prime
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCATCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCGCAAGCTTTCTAGACC

BO18360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PA 453 CG13102-RA 1..450 17..466 2225 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..526 17..466 2235 99.8 Plus
CG13102-RA 576 CG13102-RA 77..526 17..466 2235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012840 252..466 1060 99.5 Plus
2L 23513712 2L 9012384..9012561 74..251 890 100 Plus
2L 23513712 2L 9012264..9012325 17..78 295 98.4 Plus
Blast to na_te.dros performed on 2015-02-11 09:09:31 has no hits.

BO18360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:48 Download gff for BO18360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-PA 1..453 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:53 Download gff for BO18360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 17..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:58 Download gff for BO18360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 17..466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:58 Download gff for BO18360.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9012264..9012321 17..74 100 -> Plus
2L 9012385..9012561 75..251 100 -> Plus
2L 9012626..9012840 252..466 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:53 Download gff for BO18360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012264..9012321 17..74 100 -> Plus
arm_2L 9012385..9012561 75..251 100 -> Plus
arm_2L 9012626..9012840 252..466 99   Plus

BO18360.3prime Sequence

482 bp (482 high quality bases) assembled on 2006-10-13

> BO18360.3prime
ATGGTCTAGAAAGCTTGCGGCATACATCTTGACCAGCAAGAGACCCAGAA
CGCTAGACGCGATGGCAATAGTGCTGCTGCTCATCTTTCCGGCCGGATTC
TTGTTGCACTTGTCGCCCGAACAGGTGAGACACCAGGTCTTATTGTAGTG
AGCATAGGCCGGCTTAAGTGCTAAGCTGCAGGCTCCAACATTTGGATGCA
CACAGCCATGGAGCTGATGGATCACATCGTTATTCCAGTTGTACTTCAAA
GCCAGGCAATCGAATCGCGTGCTGGTTAGGTTGCCAACATTCTGATGATA
GACACCCAGGTAGTAACTAGTCTCATTCGCAGCCGCATTCGTGCAGGTGA
CTTTCTTGGGACTCTTGCAGTCCTTTGGCGTTACGCAGGTGTAACACTTC
AGGGAATCAGCAATTTGCACACACACAAAGGCCACAAGTATGCTGACTAT
TAAAGCTTTCATATACATGTCGACTGATAACT

BO18360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PA 453 CG13102-RA 1..450 468..19 2225 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..526 468..19 2235 99.8 Minus
CG13102-RA 576 CG13102-RA 77..526 468..19 2235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012840 233..19 1075 100 Minus
2L 23513712 2L 9012384..9012561 411..234 875 99.4 Minus
2L 23513712 2L 9012264..9012325 468..407 295 98.4 Minus
Blast to na_te.dros performed on 2015-02-02 18:02:52 has no hits.

BO18360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:47 Download gff for BO18360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-PA 1..453 18..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:07 Download gff for BO18360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 19..468 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:13 Download gff for BO18360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 19..468 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:13 Download gff for BO18360.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9012385..9012561 234..410 99 -> Minus
2L 9012264..9012321 411..468 100 -> Minus
2L 9012626..9012840 19..233 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:07 Download gff for BO18360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012264..9012321 411..468 100 -> Minus
arm_2L 9012385..9012561 234..410 99 -> Minus
arm_2L 9012626..9012840 19..233 100   Minus

BO18360.complete Sequence

484 bp assembled on 2006-10-11

GenBank Submission: FJ634392

> BO18360.complete
GAAGTTATCAGTCGACATGTATATGAAAGCTTTAATAGTCAGCATACTTG
TGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACACCTGC
GTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACGAATGC
GGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAATGTTG
GCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACAACTGG
AATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAATGTTGG
AGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAAGACCT
GGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCGGAAAG
ATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTCTTGCT
GGTCAAGATGTATGCCGCAAGCTTTCTAGACCAT

BO18360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 453 CG13102-PB 1..450 17..466 2250 100 Plus
CG13102-RA 453 CG13102-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-RB 1835 CG13102-RB 77..526 17..466 2250 100 Plus
CG13102-RA 576 CG13102-RA 77..526 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9012840 252..466 1075 100 Plus
2L 23513712 2L 9012384..9012561 74..251 890 100 Plus
2L 23513712 2L 9012264..9012325 17..78 295 98.4 Plus
Blast to na_te.dros performed on 2014-11-28 00:11:28 has no hits.

BO18360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:57 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:57 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 72..521 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:34 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 17..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:58 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 72..521 17..466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:42 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 77..526 17..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:42 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012264..9012321 17..74 100 -> Plus
2L 9012385..9012561 75..251 100 -> Plus
2L 9012626..9012840 252..468 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:34 Download gff for BO18360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012264..9012321 17..74 100 -> Plus
arm_2L 9012385..9012561 75..251 100 -> Plus
arm_2L 9012626..9012840 252..468 99   Plus

BO18360.pep Sequence

Translation from 16 to 484

> BO18360.pep
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
ASFLDH

BO18360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PB 150 CG13102-PB 1..150 1..150 813 100 Plus
CG13102-PA 150 CG13102-PA 1..150 1..150 813 100 Plus
CG9568-PA 150 CG9568-PA 1..148 1..148 244 37.7 Plus