Clone Sequence Records
BO18365.3prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO18365.3prime
ATGGTCTAGAAAGCTTGCTGCCACCTGCTCCTGTCCGTTCGAGGCCTCTT
GGTTTTTCATGACTTCGGGTAAGTCTGGTGGTGCCGAGTAGGGTGTCATG
TCCAGTGTCTCAAAGTCGCCCACCTCGTTCCTGAATGTCAAGCCCAGCTG
TGCCGGAGCCTGCGCCTTGGCCGTGGACACCGTCACGCCGTAGTCCTGCA
ACGTGCTGTCGTCCTCCATGACATCGTTGTCCTGATTGTATAACCGCTGG
TCCACGGGCTGCACCTTTAGTATGCCCTCAATCATTCGCTTCAGCTCGGC
CACCGTTGTGTTCTCCTTGGCGTCCGTGAAGATGGTGGTCTTTTGCCGCC
TGATCATAAGGAACACGTCCATGTCGACTGATAACT
BO18365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4204-PA | 357 | Elongin-B-RA | 1..354 | 372..19 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..748 | 372..19 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 130..276 | 735 | 100 | Plus |
3R | 32079331 | 3R | 20578681..20578794 | 19..132 | 570 | 100 | Plus |
3R | 32079331 | 3R | 20579138..20579233 | 275..370 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:57:30 has no hits.
BO18365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:52 Download gff for
BO18365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4204-PA | 1..357 | 15..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:26 Download gff for
BO18365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 387..752 | 14..381 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:25 Download gff for
BO18365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 387..752 | 14..381 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:25 Download gff for
BO18365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578677..20578792 | 14..130 | 98 | <- | Plus |
3R | 20578914..20579058 | 131..275 | 100 | <- | Plus |
3R | 20579139..20579242 | 276..381 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:26 Download gff for
BO18365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404399..16404514 | 14..130 | 98 | <- | Plus |
arm_3R | 16404636..16404780 | 131..275 | 100 | <- | Plus |
arm_3R | 16404861..16404964 | 276..381 | 95 | | Plus |
BO18365.5prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO18365.5prime
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCAGCAAGCTTTCTAGACC
BO18365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4204-PA | 357 | Elongin-B-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..748 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 259..113 | 735 | 100 | Minus |
3R | 32079331 | 3R | 20578681..20578794 | 370..257 | 570 | 100 | Minus |
3R | 32079331 | 3R | 20579138..20579233 | 114..19 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:46:44 has no hits.
BO18365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:52 Download gff for
BO18365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4204-PA | 1..357 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:06 Download gff for
BO18365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 387..752 | 8..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:48 Download gff for
BO18365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 387..752 | 8..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:48 Download gff for
BO18365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578914..20579058 | 114..258 | 100 | <- | Minus |
3R | 20579139..20579242 | 8..113 | 95 | | Minus |
3R | 20578677..20578792 | 259..375 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:06 Download gff for
BO18365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404399..16404514 | 259..375 | 98 | <- | Minus |
arm_3R | 16404636..16404780 | 114..258 | 100 | <- | Minus |
arm_3R | 16404861..16404964 | 8..113 | 95 | | Minus |
BO18365.complete Sequence
388 bp assembled on 2006-10-11
GenBank Submission: FJ634393
> BO18365.complete
GAAGTTATCAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGA
CCACCATCTTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAG
CGAATGATTGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATA
CAATCAGGACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACG
GCGTGACGGTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTG
ACATTCAGGAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTA
CTCGGCACCACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGA
ACGGACAGGAGCAGGTGGCAGCAAGCTTTCTAGACCAT
BO18365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 357 | CG4204-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-RA | 1207 | CG4204-RA | 395..748 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20578913..20579059 | 259..113 | 735 | 100 | Minus |
3R | 32079331 | 3R | 20578681..20578794 | 370..257 | 570 | 100 | Minus |
3R | 32079331 | 3R | 20579138..20579233 | 114..19 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:56:12 has no hits.
BO18365.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:58 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 1..357 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:59 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 408..773 | 8..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:52 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 395..748 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:59 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Elongin-B-RA | 408..773 | 8..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:12 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
EloB-RA | 395..748 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:12 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20578914..20579058 | 114..258 | 100 | <- | Minus |
3R | 20579139..20579234 | 17..113 | 98 | | Minus |
3R | 20578679..20578792 | 259..372 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:52 Download gff for
BO18365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16404636..16404780 | 114..258 | 100 | <- | Minus |
arm_3R | 16404861..16404956 | 17..113 | 98 | | Minus |
arm_3R | 16404401..16404514 | 259..372 | 98 | <- | Minus |
BO18365.pep Sequence
Translation from 16 to 388
> BO18365.pep
MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDND
VMEDDSTLQDYGVTVSTAKAQAPAQLGLTFRNEVGDFETLDMTPYSAPPD
LPEVMKNQEASNGQEQVAASFLDH
BO18365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
EloB-PA | 118 | CG4204-PA | 1..118 | 1..118 | 598 | 100 | Plus |