Clone BO18370 Report

Search the DGRC for BO18370

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptstet-RA
Protein status:BO18370.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO18370.3prime Sequence

690 bp (689 high quality bases) assembled on 2006-10-13

> BO18370.3prime
ATGGTCTAGAAAGCTTGCCACCTGGAAATCATTGAAAATGGTTTCCGTGA
CACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATGATG
TTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGCGAT
CCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCACCA
GCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACATAC
GAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACTCGA
TGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAAAGC
CAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACTCCA
TAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGCTAG
CAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGTCAA
AGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATGCAG
GCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGCCCAAAAACCAG
CTGAACTGCCACGTTAAAACCGAGATGCAGCCACCCGGCATGGAGTACCA
TGTAGAAGAGGAAGCGCCAGATCTCGTGACGCTTATCGGG

BO18370.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 784..1455 690..19 3360 100 Minus
CG33166-PA 993 stet-RA 319..990 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 489..1160 690..19 3360 100 Minus
stet-RB 2380 CG33166-RB 971..1642 690..19 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476176..1476523 19..366 1740 100 Plus
3L 28110227 3L 1476582..1476906 366..690 1625 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:23:07 has no hits.

BO18370.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:56 Download gff for BO18370.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PA 319..993 16..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:06 Download gff for BO18370.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 971..1646 15..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:59 Download gff for BO18370.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 971..1646 15..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:59 Download gff for BO18370.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476171..1476522 15..365 99 <- Plus
3L 1476582..1476906 366..690 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:06 Download gff for BO18370.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476171..1476522 15..365 99 <- Plus
arm_3L 1476582..1476906 366..690 100   Plus

BO18370.5prime Sequence

795 bp (738 high quality bases) assembled on 2006-10-13

> BO18370.5prime
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACAAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAAATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGGCCATTTTGGCTG

BO18370.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 466..1238 17..789 3790 99.6 Plus
CG33166-PA 993 stet-RA 1..773 17..789 3790 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 170..948 16..795 3830 99.5 Plus
stet-RB 2380 CG33166-RB 653..1430 17..795 3825 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 659..246 2070 100 Minus
3L 28110227 3L 1477050..1477287 254..17 1160 99.2 Minus
3L 28110227 3L 1476393..1476523 789..659 610 97.7 Minus
Blast to na_te.dros performed on 2015-02-10 21:01:15 has no hits.

BO18370.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:56 Download gff for BO18370.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PA 1..778 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:23 Download gff for BO18370.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RA 161..948 4..795 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:57 Download gff for BO18370.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RA 161..948 4..795 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:57 Download gff for BO18370.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476388..1476522 660..795 97 <- Minus
3L 1476582..1476993 248..659 100 <- Minus
3L 1477057..1477297 5..247 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:23 Download gff for BO18370.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476388..1476522 660..795 97 <- Minus
arm_3L 1476582..1476993 248..659 100 <- Minus
arm_3L 1477057..1477297 5..247 97   Minus

BO18370.complete Sequence

1024 bp assembled on 2006-10-11

GenBank Submission: FJ634394

> BO18370.complete
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAG
CTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCT
GGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCA
ATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTC
CAGGTGGCAAGCTTTCTAGACCAT

BO18370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 993 CG33166-PA 1..990 17..1006 4950 100 Plus
stet-RB 1458 CG33166-PB 466..1455 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 170..1160 16..1006 4955 100 Plus
stet-RB 2380 CG33166-RB 653..1642 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 659..246 2070 100 Minus
3L 28110227 3L 1476176..1476523 1006..659 1740 100 Minus
3L 28110227 3L 1477050..1477287 254..17 1160 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 01:04:00 has no hits.

BO18370.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:59 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 1..993 17..1009 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:00 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 151..1154 4..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:01 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 171..1160 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:59 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 151..1154 4..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:40 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RA 171..1160 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:40 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1476173..1476522 660..1008 99 <- Minus
3L 1476582..1476993 248..659 100 <- Minus
3L 1477057..1477287 17..247 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:01 Download gff for BO18370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476173..1476522 660..1008 99 <- Minus
arm_3L 1476582..1476993 248..659 100 <- Minus
arm_3L 1477057..1477287 17..247 100   Minus

BO18370.pep Sequence

Translation from 16 to 1024

> BO18370.pep
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQVASFLDH

BO18370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
stet-PA 330 CG33166-PA 1..330 1..330 1718 100 Plus
stet-PB 485 CG33166-PB 156..485 1..330 1718 100 Plus
rho-PB 355 CG1004-PB 102..355 67..331 663 48.3 Plus
rho-PA 355 CG1004-PA 102..355 67..331 663 48.3 Plus
ru-PA 341 CG1214-PA 97..315 66..306 626 51.9 Plus