Clone Sequence Records
BO18370.3prime Sequence
690 bp (689 high quality bases) assembled on 2006-10-13
> BO18370.3prime
ATGGTCTAGAAAGCTTGCCACCTGGAAATCATTGAAAATGGTTTCCGTGA
CACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATGATG
TTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGCGAT
CCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCACCA
GCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACATAC
GAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACTCGA
TGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAAAGC
CAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACTCCA
TAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGCTAG
CAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGTCAA
AGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATGCAG
GCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGCCCAAAAACCAG
CTGAACTGCCACGTTAAAACCGAGATGCAGCCACCCGGCATGGAGTACCA
TGTAGAAGAGGAAGCGCCAGATCTCGTGACGCTTATCGGG
BO18370.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 784..1455 | 690..19 | 3360 | 100 | Minus |
CG33166-PA | 993 | stet-RA | 319..990 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:23:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 489..1160 | 690..19 | 3360 | 100 | Minus |
stet-RB | 2380 | CG33166-RB | 971..1642 | 690..19 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476176..1476523 | 19..366 | 1740 | 100 | Plus |
3L | 28110227 | 3L | 1476582..1476906 | 366..690 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:23:07 has no hits.
BO18370.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:56 Download gff for
BO18370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PA | 319..993 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:06 Download gff for
BO18370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 971..1646 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:59 Download gff for
BO18370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 971..1646 | 15..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:59 Download gff for
BO18370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476171..1476522 | 15..365 | 99 | <- | Plus |
3L | 1476582..1476906 | 366..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:06 Download gff for
BO18370.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476171..1476522 | 15..365 | 99 | <- | Plus |
arm_3L | 1476582..1476906 | 366..690 | 100 | | Plus |
BO18370.5prime Sequence
795 bp (738 high quality bases) assembled on 2006-10-13
> BO18370.5prime
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACAAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAAATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGGCCATTTTGGCTG
BO18370.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 466..1238 | 17..789 | 3790 | 99.6 | Plus |
CG33166-PA | 993 | stet-RA | 1..773 | 17..789 | 3790 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 170..948 | 16..795 | 3830 | 99.5 | Plus |
stet-RB | 2380 | CG33166-RB | 653..1430 | 17..795 | 3825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 659..246 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477287 | 254..17 | 1160 | 99.2 | Minus |
3L | 28110227 | 3L | 1476393..1476523 | 789..659 | 610 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:15 has no hits.
BO18370.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:56 Download gff for
BO18370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PA | 1..778 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:23 Download gff for
BO18370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 161..948 | 4..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:57 Download gff for
BO18370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 161..948 | 4..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:57 Download gff for
BO18370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476388..1476522 | 660..795 | 97 | <- | Minus |
3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
3L | 1477057..1477297 | 5..247 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:23 Download gff for
BO18370.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476388..1476522 | 660..795 | 97 | <- | Minus |
arm_3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
arm_3L | 1477057..1477297 | 5..247 | 97 | | Minus |
BO18370.complete Sequence
1024 bp assembled on 2006-10-11
GenBank Submission: FJ634394
> BO18370.complete
GAAGTTATCAGTCGACATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCG
CCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTG
GTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCAT
GGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACA
CCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTG
GGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGG
ACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACG
AGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCAT
CTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGAT
GGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGG
CGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGC
GCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGTGCT
TCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACATTC
TGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTATGCT
GGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGATCA
GGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTGCCA
TTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAGAAG
CTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGCGCT
GGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGTTCA
ATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGATTTC
CAGGTGGCAAGCTTTCTAGACCAT
BO18370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 993 | CG33166-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
stet-RB | 1458 | CG33166-PB | 466..1455 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 170..1160 | 16..1006 | 4955 | 100 | Plus |
stet-RB | 2380 | CG33166-RB | 653..1642 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 659..246 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1476176..1476523 | 1006..659 | 1740 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477287 | 254..17 | 1160 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:00 has no hits.
BO18370.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:59 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 1..993 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:00 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 151..1154 | 4..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:01 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 171..1160 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:59 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 151..1154 | 4..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:40 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RA | 171..1160 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:40 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476173..1476522 | 660..1008 | 99 | <- | Minus |
3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
3L | 1477057..1477287 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:01 Download gff for
BO18370.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476173..1476522 | 660..1008 | 99 | <- | Minus |
arm_3L | 1476582..1476993 | 248..659 | 100 | <- | Minus |
arm_3L | 1477057..1477287 | 17..247 | 100 | | Minus |
BO18370.pep Sequence
Translation from 16 to 1024
> BO18370.pep
MSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILPE
ERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPSD
SMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGST
RIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQ
MRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAG
AVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFAI
AFNIMNGFAMFNIRVEKIRVTETIFNDFQVASFLDH
BO18370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-PA | 330 | CG33166-PA | 1..330 | 1..330 | 1718 | 100 | Plus |
stet-PB | 485 | CG33166-PB | 156..485 | 1..330 | 1718 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 102..355 | 67..331 | 663 | 48.3 | Plus |
rho-PA | 355 | CG1004-PA | 102..355 | 67..331 | 663 | 48.3 | Plus |
ru-PA | 341 | CG1214-PA | 97..315 | 66..306 | 626 | 51.9 | Plus |