Clone BO18371 Report

Search the DGRC for BO18371

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:71
Vector:pDNR-Dual
Associated Gene/TranscripteIF2B-beta-RA
Protein status:BO18371.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO18371.3prime Sequence

808 bp (768 high quality bases) assembled on 2006-10-13

> BO18371.3prime
ATGGTCTAGAAAGCTTGCAATCTCCAAATCTTCGGGATGATACAGTTCCG
TAAGGAGGCGGTACACATACGAGGGGGCATGGCCACCGGTGTTGGATATG
AAAAGGGTGACCAGTTCCGGAGGCACGTAGTCGAACATGGGACTGTATAC
CTTGGCTTCGCGCGCTGGAATCGAATCGTAGGGTATCACATCCTCCGCAC
AGCCGACCATATTGAAGGCGTCCTGCTCGCACAGATGCAATGGTGAGAGT
TTGTACATGGGCGCCAGTACAATGACCGGCACGGAGTAATGCTTGGCGGC
CAGGGCCACTGTATACGCTCCACACGCCGCTCTGAGTCCTCCATTAGCCA
GCACGCTGTGCGTACCGATTATTACCTTGTTGACGCGCGACATCATAGCG
AAGATGGCCGCATCTGGGATCACAACAATCTCCACATTCTTCTCGTTGGC
CAAGCTGGCGGCCAAATTGTGACCCCGGCAGGCTGGCGCACATTCGGCTA
CGATGATGGTGAGAAACTGACGCTTTTTGATCGCCCTTTTGAGGAAATTC
TCGACGCTGCGCGAGTGTCCCAGTGTCAAGATGATCTCCGACGAATGGAT
GTGCTCCTCGGCCTGGACGCAGATGTTCTCCGAACTGGTCTCCAGCTCCG
TTTCCACCTCCTGCAGGTGGTCGAGCAGCGCTTCCCGCAATCCATGCTGG
GGCACCGAGTAATCTACGCTGACGTTGCTCTCGCTGGTCTGCGTGACTAG
CTTGTGAAGCGACAGCGAGGCCTGTGAGTCGTCCGCGAAGTGTTGCACCT
TGGCGTGC

BO18371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2677-PA 1059 eIF2B-beta-RA 267..1056 808..19 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 414..1203 808..19 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2705539..2705925 475..89 1935 100 Minus
X 23542271 X 2705116..2705450 808..474 1675 100 Minus
X 23542271 X 2705994..2706063 88..19 350 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:36 has no hits.

BO18371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:56 Download gff for BO18371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2677-PA 267..1059 16..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:52 Download gff for BO18371.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 414..1207 15..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:53 Download gff for BO18371.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 414..1207 15..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:53 Download gff for BO18371.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2705116..2705449 475..808 100 -> Minus
X 2705540..2705925 89..474 100 -> Minus
X 2705994..2706067 15..88 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:52 Download gff for BO18371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2599149..2599482 475..808 100 -> Minus
arm_X 2599573..2599958 89..474 100 -> Minus
arm_X 2600027..2600100 15..88 97   Minus

BO18371.5prime Sequence

893 bp (754 high quality bases) assembled on 2006-10-13

> BO18371.5prime
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACCCCTTCAATATGGTCGGCTGTG

BO18371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2677-PA 1059 eIF2B-beta-RA 1..877 17..893 4360 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 148..1024 17..893 4370 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2704993..2705450 160..617 2290 100 Plus
X 23542271 X 2705539..2705816 616..893 1375 99.6 Plus
X 23542271 X 2704836..2704923 72..159 440 100 Plus
X 23542271 X 2704718..2704774 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:11:19 has no hits.

BO18371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:57 Download gff for BO18371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2677-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:41 Download gff for BO18371.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1024 17..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:07 Download gff for BO18371.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1024 17..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:07 Download gff for BO18371.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2705540..2705816 617..893 99   Plus
X 2704718..2704773 17..72 100 -> Plus
X 2704837..2704923 73..159 100 -> Plus
X 2704993..2705449 160..616 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:41 Download gff for BO18371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2598751..2598806 17..72 100 -> Plus
arm_X 2598870..2598956 73..159 100 -> Plus
arm_X 2599026..2599482 160..616 100 -> Plus
arm_X 2599573..2599849 617..893 99   Plus

BO18371.complete Sequence

1090 bp assembled on 2006-10-11

GenBank Submission: FJ634395

> BO18371.complete
GAAGTTATCAGTCGACATGAAGGAACAGCCGCTAAAGGAGATCACACAGC
TCATCCACGCCATCAAAGTGGGGCTGGTGGAGGGATCCTACAACATAACC
AACAAGACGCTGGACATCTTCAAGTACATCATCATGAGCAAGAGCTGGCA
GAACGCCGATGCTCTCATGCAGATTGTGCGCGACCAGTGTAAGATCCTGC
AGGCAGCTCTGCCCCAGGAGACGGTTACCTCGAACATTGCCAGGCGGATC
CTCAAGCTGACTCGCGAGGAGTTCGATCTGTTGCACGCCAAGGTGCAACA
CTTCGCGGACGACTCACAGGCCTCGCTGTCGCTTCACAAGCTAGTCACGC
AGACCAGCGAGAGCAACGTCAGCGTAGATTACTCGGTGCCCCAGCATGGA
TTGCGGGAAGCGCTGCTCGACCACCTGCAGGAGGTGGAAACGGAGCTGGA
GACCAGTTCGGAGAACATCTGCGTCCAGGCCGAGGAGCACATCCATTCGT
CGGAGATCATCTTGACACTGGGACACTCGCGCAGCGTCGAGAATTTCCTC
AAAAGGGCGATCAAAAAGCGTCAGTTTCTCACCATCATCGTAGCCGAATG
TGCGCCAGCCTGCCGGGGTCACAATTTGGCCGCCAGCTTGGCCAACGAGA
AGAATGTGGAGATTGTTGTGATCCCAGATGCGGCCATCTTCGCTATGATG
TCGCGCGTCAACAAGGTAATAATCGGTACGCACAGCGTGCTGGCTAATGG
AGGACTCAGAGCGGCGTGTGGAGCGTATACAGTGGCCCTGGCCGCCAAGC
ATTACTCCGTGCCGGTCATTGTACTGGCGCCCATGTACAAACTCTCACCA
TTGCATCTGTGCGAGCAGGACGCCTTCAATATGGTCGGCTGTGCGGAGGA
TGTGATACCCTACGATTCGATTCCAGCGCGCGAAGCCAAGGTATACAGTC
CCATGTTCGACTACGTGCCTCCGGAACTGGTCACCCTTTTCATATCCAAC
ACCGGTGGCCATGCCCCCTCGTATGTGTACCGCCTCCTTACGGAACTGTA
TCATCCCGAAGATTTGGAGATTGCAAGCTTTCTAGACCAT

BO18371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1059 CG2677-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-RA 1357 CG2677-RA 148..1203 17..1072 5280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2704993..2705450 160..617 2290 100 Plus
X 23542271 X 2705539..2705925 616..1002 1935 100 Plus
X 23542271 X 2704836..2704923 72..159 440 100 Plus
X 23542271 X 2705994..2706063 1003..1072 350 100 Plus
X 23542271 X 2704718..2704774 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:24:45 has no hits.

BO18371.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:41 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 1..1059 17..1075 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:36 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 143..1201 17..1075 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:17 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1203 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:41 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 143..1201 17..1075 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:57 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
eIF2B-beta-RA 148..1203 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:57 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
X 2704718..2704773 17..72 100 -> Plus
X 2704837..2704923 73..159 100 -> Plus
X 2704993..2705449 160..616 100 -> Plus
X 2705540..2705925 617..1002 100 -> Plus
X 2705994..2706063 1003..1074 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:17 Download gff for BO18371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2598751..2598806 17..72 100 -> Plus
arm_X 2598870..2598956 73..159 100 -> Plus
arm_X 2599026..2599482 160..616 100 -> Plus
arm_X 2599573..2599958 617..1002 100 -> Plus
arm_X 2600027..2600096 1003..1074 97   Plus

BO18371.pep Sequence

Translation from 16 to 1090

> BO18371.pep
MKEQPLKEITQLIHAIKVGLVEGSYNITNKTLDIFKYIIMSKSWQNADAL
MQIVRDQCKILQAALPQETVTSNIARRILKLTREEFDLLHAKVQHFADDS
QASLSLHKLVTQTSESNVSVDYSVPQHGLREALLDHLQEVETELETSSEN
ICVQAEEHIHSSEIILTLGHSRSVENFLKRAIKKRQFLTIIVAECAPACR
GHNLAASLANEKNVEIVVIPDAAIFAMMSRVNKVIIGTHSVLANGGLRAA
CGAYTVALAAKHYSVPVIVLAPMYKLSPLHLCEQDAFNMVGCAEDVIPYD
SIPAREAKVYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDL
EIASFLDH

BO18371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
eIF2B-beta-PA 352 CG2677-PA 1..352 1..352 1787 100 Plus
eIF2B-delta-PD 576 CG10315-PD 306..554 89..327 183 23.2 Plus
eIF2B-delta-PB 576 CG10315-PB 306..554 89..327 183 23.2 Plus
eIF2B-delta-PC 576 CG10315-PC 306..554 89..327 183 23.2 Plus
eIF2B-alpha-PA 306 CG7883-PA 97..305 130..345 180 27.6 Plus