Clone Sequence Records
BO18373.3prime Sequence
260 bp (260 high quality bases) assembled on 2006-10-13
> BO18373.3prime
ATGGTCTAGAAAGCTTGCGACCCTGTCCAGGGCCTCCACCATGACGATGC
TGTTGCCGCGGATAACCACCATGCCGATGTTGTTCTTCGTGTTGTCCTTG
CACTCCTCCACCGTGTCGTCCAGGACCACGTTCATGAAGGGATCGAAGCC
TCGCAAAATACCGGTCACCGCGCGTCCGCCGTTCAGTTTCAGCATCATGC
GCTTGTCCATGTATTTTTTCACCTCTGGGGGATGGGCCTTCGACATGTCG
ACTGATAACT
BO18373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9742-PA | 231 | CG9742-RA | 1..228 | 246..19 | 1140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmG-RB | 432 | CG9742-RB | 83..310 | 246..19 | 1140 | 100 | Minus |
SmG-RA | 483 | CG9742-RA | 83..310 | 246..19 | 1140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16640091..16640240 | 65..214 | 750 | 100 | Plus |
X | 23542271 | X | 16639983..16640031 | 19..67 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:47 has no hits.
BO18373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:57 Download gff for
BO18373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9742-PA | 1..231 | 18..246 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:01 Download gff for
BO18373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 76..314 | 13..254 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:53 Download gff for
BO18373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 76..314 | 13..254 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:53 Download gff for
BO18373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16639979..16640030 | 13..66 | 94 | <- | Plus |
X | 16640093..16640240 | 67..214 | 100 | <- | Plus |
X | 16640306..16640344 | 215..254 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:01 Download gff for
BO18373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16534012..16534063 | 13..66 | 94 | <- | Plus |
arm_X | 16534126..16534273 | 67..214 | 100 | <- | Plus |
arm_X | 16534339..16534377 | 215..254 | 92 | | Plus |
BO18373.5prime Sequence
260 bp (260 high quality bases) assembled on 2006-10-13
> BO18373.5prime
GAAGTTATCAGTCGACATGTCGAAGGCCCATCCCCCAGAGGTGAAAAAAT
ACATGGACAAGCGCATGATGCTGAAACTGAACGGCGGACGCGCGGTGACC
GGTATTTTGCGAGGCTTCGATCCCTTCATGAACGTGGTCCTGGACGACAC
GGTGGAGGAGTGCAAGGACAACACGAAGAACAACATCGGCATGGTGGTTA
TCCGCGGCAACAGCATCGTCATGGTGGAGGCCCTGGACAGGGTCGCAAGC
TTTCTAGACC
BO18373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9742-PA | 231 | CG9742-RA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmG-RB | 432 | CG9742-RB | 83..310 | 17..244 | 1140 | 100 | Plus |
SmG-RA | 483 | CG9742-RA | 83..310 | 17..244 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16640091..16640240 | 198..49 | 750 | 100 | Minus |
X | 23542271 | X | 16639983..16640031 | 244..196 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:57:42 has no hits.
BO18373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:58 Download gff for
BO18373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9742-PA | 1..231 | 17..245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:29 Download gff for
BO18373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 76..314 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:28 Download gff for
BO18373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 76..314 | 9..250 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:28 Download gff for
BO18373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16639979..16640030 | 197..250 | 94 | <- | Minus |
X | 16640093..16640240 | 49..196 | 100 | <- | Minus |
X | 16640306..16640344 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:29 Download gff for
BO18373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16534012..16534063 | 197..250 | 94 | <- | Minus |
arm_X | 16534126..16534273 | 49..196 | 100 | <- | Minus |
arm_X | 16534339..16534377 | 9..48 | 92 | | Minus |
BO18373.complete Sequence
262 bp assembled on 2006-10-11
GenBank Submission: FJ634396
> BO18373.complete
GAAGTTATCAGTCGACATGTCGAAGGCCCATCCCCCAGAGGTGAAAAAAT
ACATGGACAAGCGCATGATGCTGAAACTGAACGGCGGACGCGCGGTGACC
GGTATTTTGCGAGGCTTCGATCCCTTCATGAACGTGGTCCTGGACGACAC
GGTGGAGGAGTGCAAGGACAACACGAAGAACAACATCGGCATGGTGGTTA
TCCGCGGCAACAGCATCGTCATGGTGGAGGCCCTGGACAGGGTCGCAAGC
TTTCTAGACCAT
BO18373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmG-RB | 231 | CG9742-PB | 1..228 | 17..244 | 1140 | 100 | Plus |
SmG-RA | 231 | CG9742-PA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmG-RB | 432 | CG9742-RB | 83..310 | 17..244 | 1140 | 100 | Plus |
SmG-RA | 483 | CG9742-RA | 83..310 | 17..244 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16640091..16640240 | 198..49 | 750 | 100 | Minus |
X | 23542271 | X | 16639983..16640031 | 244..196 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:35 has no hits.
BO18373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:24 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RB | 1..231 | 17..245 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:59 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 70..308 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:43 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 83..310 | 17..246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:24 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 70..308 | 9..250 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:55 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SmG-RA | 83..310 | 17..246 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:55 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16639979..16640030 | 197..246 | 96 | <- | Minus |
X | 16640093..16640240 | 49..196 | 100 | <- | Minus |
X | 16640306..16640337 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:43 Download gff for
BO18373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16534012..16534063 | 197..246 | 96 | <- | Minus |
arm_X | 16534126..16534273 | 49..196 | 100 | <- | Minus |
arm_X | 16534339..16534370 | 17..48 | 100 | | Minus |
BO18373.pep Sequence
Translation from 16 to 262
> BO18373.pep
MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECK
DNTKNNIGMVVIRGNSIVMVEALDRVASFLDH
BO18373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SmG-PB | 76 | CG9742-PB | 1..76 | 1..76 | 391 | 100 | Plus |
SmG-PA | 76 | CG9742-PA | 1..76 | 1..76 | 391 | 100 | Plus |
LSm7-PB | 110 | CG13277-PB | 23..102 | 8..78 | 145 | 36.2 | Plus |
LSm7-PC | 110 | CG13277-PC | 23..102 | 8..78 | 145 | 36.2 | Plus |
LSm7-PA | 110 | CG13277-PA | 23..102 | 8..78 | 145 | 36.2 | Plus |