Clone Sequence Records
BO18375.3prime Sequence
437 bp (437 high quality bases) assembled on 2006-10-13
> BO18375.3prime
ATGGTCTAGAAAGCTTGCAAACGAACCCAAGCAGGAGTTGCAGTTGGGAC
AGTACTGGGAGGTCTTGTAGCAACAGTTGCAGCAGCAAGGGGCGCAGACG
CAGGGCCAGCATAGGAATAGGCAGAGCAACGCCGCCATACAGTAAGTTGA
TCCGGTAGGATGGTGCTCCACGCGAAGGCGAATCCGAGCGTTGCAGTGGG
GACAGATCGTTCCCTGGCGGGTATTGTCCACCAGCACTGTCGTCTGGTGA
TGCATCACGCTTACGGGCTGCAACACCGGCATGGTTTGGGCCATCACGGG
TATCACCGGATTGGGATGTGCGGGCGACGCCAGGTTCTGCTGCATGACGT
CCTCCGCTGGAGGAGCGGTGGCGAATGGATCCGAGTAGGGCGGCGGGGAG
TCTACGCGCTTGTAGCAACGCATGTCGACTGATAACT
BO18375.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13512-PA | 408 | CG13512-RA | 1..405 | 423..19 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42565-RB | 2577 | CG42565-RB | 1945..2350 | 424..19 | 2030 | 100 | Minus |
CG42565-RA | 700 | CG42565-RA | 68..473 | 424..19 | 2030 | 100 | Minus |
CG13511-RB | 2577 | CG13511-RB | 1945..2350 | 424..19 | 2030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22660550..22660861 | 424..113 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 22661069..22661162 | 112..19 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:34:16 has no hits.
BO18375.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:59 Download gff for
BO18375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13512-PA | 1..408 | 16..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:01 Download gff for
BO18375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42565-RA | 68..478 | 14..424 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:21 Download gff for
BO18375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13511-RB | 1945..2355 | 14..424 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:21 Download gff for
BO18375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22660550..22660861 | 113..424 | 100 | -> | Minus |
2R | 22661069..22661167 | 14..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:01 Download gff for
BO18375.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18548055..18548366 | 113..424 | 100 | -> | Minus |
arm_2R | 18548574..18548672 | 14..112 | 98 | | Minus |
BO18375.5prime Sequence
437 bp (437 high quality bases) assembled on 2006-10-13
> BO18375.5prime
GAAGTTATCAGTCGACATGCGTTGCTACAAGCGCGTAGACTCCCCGCCGC
CCTACTCGGATCCATTCGCCACCGCTCCTCCAGCGGAGGACGTCATGCAG
CAGAACCTGGCGTCGCCCGCACATCCCAATCCGGTGATACCCGTGATGGC
CCAAACCATGCCGGTGTTGCAGCCCGTAAGCGTGATGCATCACCAGACGA
CAGTGCTGGTGGACAATACCCGCCAGGGAACGATCTGTCCCCACTGCAAC
GCTCGGATTCGCCTTCGCGTGGAGCACCATCCTACCGGATCAACTTACTG
TATGGCGGCGTTGCTCTGCCTATTCCTATGCTGGCCCTGCGTCTGCGCCC
CTTGCTGCTGCAACTGTTGCTACAAGACCTCCCAGTACTGTCCCAACTGC
AACTCCTGCTTGGGTTCGTTTGCAAGCTTTCTAGACC
BO18375.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13512-PA | 408 | CG13512-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42565-RB | 2577 | CG42565-RB | 1945..2350 | 16..421 | 2030 | 100 | Plus |
CG42565-RA | 700 | CG42565-RA | 68..473 | 16..421 | 2030 | 100 | Plus |
CG13511-RB | 2577 | CG13511-RB | 1945..2350 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22660550..22660861 | 16..327 | 1560 | 100 | Plus |
2R | 25286936 | 2R | 22661069..22661162 | 328..421 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:45:08 has no hits.
BO18375.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:59 Download gff for
BO18375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13512-PA | 1..408 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:33 Download gff for
BO18375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42565-RA | 68..478 | 16..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:44 Download gff for
BO18375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13511-RB | 1945..2355 | 16..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:44 Download gff for
BO18375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22660550..22660861 | 16..327 | 100 | -> | Plus |
2R | 22661069..22661167 | 328..426 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:33 Download gff for
BO18375.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18548055..18548366 | 16..327 | 100 | -> | Plus |
arm_2R | 18548574..18548672 | 328..426 | 98 | | Plus |
BO18375.complete Sequence
439 bp assembled on 2006-10-11
GenBank Submission: FJ634397
> BO18375.complete
GAAGTTATCAGTCGACATGCGTTGCTACAAGCGCGTAGACTCCCCGCCGC
CCTACTCGGATCCATTCGCCACCGCTCCTCCAGCGGAGGACGTCATGCAG
CAGAACCTGGCGTCGCCCGCACATCCCAATCCGGTGATACCCGTGATGGC
CCAAACCATGCCGGTGTTGCAGCCCGTAAGCGTGATGCATCACCAGACGA
CAGTGCTGGTGGACAATACCCGCCAGGGAACGATCTGTCCCCACTGCAAC
GCTCGGATTCGCCTTCGCGTGGAGCACCATCCTACCGGATCAACTTACTG
TATGGCGGCGTTGCTCTGCCTATTCCTATGCTGGCCCTGCGTCTGCGCCC
CTTGCTGCTGCAACTGTTGCTACAAGACCTCCCAGTACTGTCCCAACTGC
AACTCCTGCTTGGGTTCGTTTGCAAGCTTTCTAGACCAT
BO18375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42565-RB | 408 | CG42565-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
CG42565-RA | 408 | CG42565-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42565-RB | 2577 | CG42565-RB | 1945..2350 | 16..421 | 2030 | 100 | Plus |
CG42565-RA | 700 | CG42565-RA | 68..473 | 16..421 | 2030 | 100 | Plus |
CG13511-RB | 2577 | CG13511-RB | 1945..2350 | 16..421 | 2030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22660550..22660861 | 16..327 | 1560 | 100 | Plus |
2R | 25286936 | 2R | 22661069..22661162 | 328..421 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:18 has no hits.
BO18375.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:42 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13512-RA | 1..408 | 17..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:38 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13512-RA | 68..478 | 16..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:38 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42565-RA | 69..473 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:42 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13512-RA | 68..478 | 16..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:20 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13511-RB | 1946..2350 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:20 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22660551..22660861 | 17..327 | 100 | -> | Plus |
2R | 22661069..22661162 | 328..423 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:38 Download gff for
BO18375.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18548056..18548366 | 17..327 | 100 | -> | Plus |
arm_2R | 18548574..18548667 | 328..423 | 97 | | Plus |
BO18375.pep Sequence
Translation from 16 to 439
> BO18375.pep
MRCYKRVDSPPPYSDPFATAPPAEDVMQQNLASPAHPNPVIPVMAQTMPV
LQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALL
CLFLCWPCVCAPCCCNCCYKTSQYCPNCNSCLGSFASFLDH
BO18375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42565-PB | 135 | CG42565-PB | 1..135 | 1..135 | 783 | 100 | Plus |
CG42565-PA | 135 | CG42565-PA | 1..135 | 1..135 | 783 | 100 | Plus |
CG13510-PC | 129 | CG13510-PC | 6..127 | 10..135 | 225 | 36.7 | Plus |
CG13510-PB | 129 | CG13510-PB | 6..127 | 10..135 | 225 | 36.7 | Plus |
CG13510-PA | 129 | CG13510-PA | 6..127 | 10..135 | 225 | 36.7 | Plus |