Clone BO18375 Report

Search the DGRC for BO18375

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG42565-RA
Protein status:BO18375.pep:
Sequenced Size:439

Clone Sequence Records

BO18375.3prime Sequence

437 bp (437 high quality bases) assembled on 2006-10-13

> BO18375.3prime
ATGGTCTAGAAAGCTTGCAAACGAACCCAAGCAGGAGTTGCAGTTGGGAC
AGTACTGGGAGGTCTTGTAGCAACAGTTGCAGCAGCAAGGGGCGCAGACG
CAGGGCCAGCATAGGAATAGGCAGAGCAACGCCGCCATACAGTAAGTTGA
TCCGGTAGGATGGTGCTCCACGCGAAGGCGAATCCGAGCGTTGCAGTGGG
GACAGATCGTTCCCTGGCGGGTATTGTCCACCAGCACTGTCGTCTGGTGA
TGCATCACGCTTACGGGCTGCAACACCGGCATGGTTTGGGCCATCACGGG
TATCACCGGATTGGGATGTGCGGGCGACGCCAGGTTCTGCTGCATGACGT
CCTCCGCTGGAGGAGCGGTGGCGAATGGATCCGAGTAGGGCGGCGGGGAG
TCTACGCGCTTGTAGCAACGCATGTCGACTGATAACT

BO18375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13512-PA 408 CG13512-RA 1..405 423..19 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 2577 CG42565-RB 1945..2350 424..19 2030 100 Minus
CG42565-RA 700 CG42565-RA 68..473 424..19 2030 100 Minus
CG13511-RB 2577 CG13511-RB 1945..2350 424..19 2030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22660550..22660861 424..113 1560 100 Minus
2R 25286936 2R 22661069..22661162 112..19 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:34:16 has no hits.

BO18375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:59 Download gff for BO18375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13512-PA 1..408 16..423 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:01 Download gff for BO18375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 68..478 14..424 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:21 Download gff for BO18375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13511-RB 1945..2355 14..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:21 Download gff for BO18375.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22660550..22660861 113..424 100 -> Minus
2R 22661069..22661167 14..112 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:01 Download gff for BO18375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18548055..18548366 113..424 100 -> Minus
arm_2R 18548574..18548672 14..112 98   Minus

BO18375.5prime Sequence

437 bp (437 high quality bases) assembled on 2006-10-13

> BO18375.5prime
GAAGTTATCAGTCGACATGCGTTGCTACAAGCGCGTAGACTCCCCGCCGC
CCTACTCGGATCCATTCGCCACCGCTCCTCCAGCGGAGGACGTCATGCAG
CAGAACCTGGCGTCGCCCGCACATCCCAATCCGGTGATACCCGTGATGGC
CCAAACCATGCCGGTGTTGCAGCCCGTAAGCGTGATGCATCACCAGACGA
CAGTGCTGGTGGACAATACCCGCCAGGGAACGATCTGTCCCCACTGCAAC
GCTCGGATTCGCCTTCGCGTGGAGCACCATCCTACCGGATCAACTTACTG
TATGGCGGCGTTGCTCTGCCTATTCCTATGCTGGCCCTGCGTCTGCGCCC
CTTGCTGCTGCAACTGTTGCTACAAGACCTCCCAGTACTGTCCCAACTGC
AACTCCTGCTTGGGTTCGTTTGCAAGCTTTCTAGACC

BO18375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13512-PA 408 CG13512-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 2577 CG42565-RB 1945..2350 16..421 2030 100 Plus
CG42565-RA 700 CG42565-RA 68..473 16..421 2030 100 Plus
CG13511-RB 2577 CG13511-RB 1945..2350 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22660550..22660861 16..327 1560 100 Plus
2R 25286936 2R 22661069..22661162 328..421 470 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:45:08 has no hits.

BO18375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:21:59 Download gff for BO18375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13512-PA 1..408 17..424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:33 Download gff for BO18375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 68..478 16..426 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:44 Download gff for BO18375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13511-RB 1945..2355 16..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:44 Download gff for BO18375.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22660550..22660861 16..327 100 -> Plus
2R 22661069..22661167 328..426 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:33 Download gff for BO18375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18548055..18548366 16..327 100 -> Plus
arm_2R 18548574..18548672 328..426 98   Plus

BO18375.complete Sequence

439 bp assembled on 2006-10-11

GenBank Submission: FJ634397

> BO18375.complete
GAAGTTATCAGTCGACATGCGTTGCTACAAGCGCGTAGACTCCCCGCCGC
CCTACTCGGATCCATTCGCCACCGCTCCTCCAGCGGAGGACGTCATGCAG
CAGAACCTGGCGTCGCCCGCACATCCCAATCCGGTGATACCCGTGATGGC
CCAAACCATGCCGGTGTTGCAGCCCGTAAGCGTGATGCATCACCAGACGA
CAGTGCTGGTGGACAATACCCGCCAGGGAACGATCTGTCCCCACTGCAAC
GCTCGGATTCGCCTTCGCGTGGAGCACCATCCTACCGGATCAACTTACTG
TATGGCGGCGTTGCTCTGCCTATTCCTATGCTGGCCCTGCGTCTGCGCCC
CTTGCTGCTGCAACTGTTGCTACAAGACCTCCCAGTACTGTCCCAACTGC
AACTCCTGCTTGGGTTCGTTTGCAAGCTTTCTAGACCAT

BO18375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 408 CG42565-PB 1..405 17..421 2025 100 Plus
CG42565-RA 408 CG42565-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 2577 CG42565-RB 1945..2350 16..421 2030 100 Plus
CG42565-RA 700 CG42565-RA 68..473 16..421 2030 100 Plus
CG13511-RB 2577 CG13511-RB 1945..2350 16..421 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22660550..22660861 16..327 1560 100 Plus
2R 25286936 2R 22661069..22661162 328..421 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:18 has no hits.

BO18375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:42 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 1..408 17..424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:38 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 68..478 16..426 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:38 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 69..473 17..423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:42 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 68..478 16..426 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:20 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
CG13511-RB 1946..2350 17..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:20 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22660551..22660861 17..327 100 -> Plus
2R 22661069..22661162 328..423 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:38 Download gff for BO18375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18548056..18548366 17..327 100 -> Plus
arm_2R 18548574..18548667 328..423 97   Plus

BO18375.pep Sequence

Translation from 16 to 439

> BO18375.pep
MRCYKRVDSPPPYSDPFATAPPAEDVMQQNLASPAHPNPVIPVMAQTMPV
LQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALL
CLFLCWPCVCAPCCCNCCYKTSQYCPNCNSCLGSFASFLDH

BO18375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-PB 135 CG42565-PB 1..135 1..135 783 100 Plus
CG42565-PA 135 CG42565-PA 1..135 1..135 783 100 Plus
CG13510-PC 129 CG13510-PC 6..127 10..135 225 36.7 Plus
CG13510-PB 129 CG13510-PB 6..127 10..135 225 36.7 Plus
CG13510-PA 129 CG13510-PA 6..127 10..135 225 36.7 Plus