Clone Sequence Records
BO18380.3prime Sequence
749 bp (746 high quality bases) assembled on 2006-10-13
> BO18380.3prime
ATGGTCTAGAAAGCTTGCCAAGTAGCCCAACTCCTTGGTCTTTTCAATTA
AAGCCAGCATTCCAACCATTAGCTCCTCGCAGTTGGGAATGATCTGCACT
GGTGGCAGGATAAAGCCGTAGCGACCCTTATCACGGTACTCGATTGTGTA
ACCGATCTTCTTGCCCAGCTCGTTGAACACCCAGTCCACGGAGGTTCCAG
TGGCCACATAAAGCACATCAGCTGTAGAGCCATACTGGTAGACGGTTCCG
TACGGCAGTGCTTCAATGGCATCGGCAAAAGCTTTGCCAATAGTCAGGAT
ATCATTGTAATTTTCTGGGAACTCCTCATTGGTATGACCGTAGGGCGAAA
GCAAATACTGTCCATATGAGTGGAAGGATATGTACACACTAATTTGGTCC
TGGATTTTGGTCAAGTACTCGACCAAGGCCTTGGCTTCAGGCTCAGATTC
AGGGTTATCCCCAGCAAAAGTCTCACTGCAGGGATTGTCAGAGGCTCCAT
TGTTCTGGAGCCAATAGGAGTCGAAGTTCCTATTGGCGTCAGCTCCAATG
CATGCATTCGTGGCATGTGGCTGACGTGTTTTGCGCCACATACGATCCTT
CTTGTGTGAGTACTCAAAACCATCTACATTGAACACGGGAATTATATGCC
AATCATAGTTATCGGCCAAACTTCGCACATCGGCATCCTCTGAGGTCAAA
AGCTGATTGATGAACCATGTAGCACTGGCCGAAGTTATCCATTCTCTGG
BO18380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PA | 1269 | CG18585-RA | 536..1266 | 749..19 | 3655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 554..1284 | 749..19 | 3655 | 100 | Minus |
CG18585-RA | 1358 | CG18585-RA | 554..1284 | 749..19 | 3655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7689720..7690109 | 210..599 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 7689450..7689640 | 19..209 | 955 | 100 | Plus |
2L | 23513712 | 2L | 7690171..7690323 | 597..749 | 765 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2827..2862 | 285..250 | 108 | 77.8 | Minus |
BO18380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:03 Download gff for
BO18380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-PA | 536..1269 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:48 Download gff for
BO18380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 554..1288 | 14..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:12 Download gff for
BO18380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 554..1288 | 14..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:12 Download gff for
BO18380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7689446..7689640 | 14..209 | 98 | <- | Plus |
2L | 7689720..7690107 | 210..597 | 100 | <- | Plus |
2L | 7690172..7690323 | 598..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:48 Download gff for
BO18380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7689446..7689640 | 14..209 | 98 | <- | Plus |
arm_2L | 7689720..7690107 | 210..597 | 100 | <- | Plus |
arm_2L | 7690172..7690323 | 598..749 | 100 | | Plus |
BO18380.5prime Sequence
824 bp (761 high quality bases) assembled on 2006-10-13
> BO18380.5prime
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCA
BO18380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PA | 1269 | CG18585-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 19..826 | 17..824 | 4040 | 100 | Plus |
CG18585-RA | 1358 | CG18585-RA | 19..826 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7690171..7690556 | 704..319 | 1930 | 100 | Minus |
2L | 23513712 | 2L | 7690879..7691043 | 181..17 | 825 | 100 | Minus |
2L | 23513712 | 2L | 7690682..7690821 | 319..180 | 700 | 100 | Minus |
2L | 23513712 | 2L | 7689987..7690109 | 824..702 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 324..379 | 57..1 | 111 | 70.7 | Minus |
micropia | 5461 | micropia DMDM11 5461bp | 5309..5364 | 57..1 | 111 | 70.7 | Minus |
BO18380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:04 Download gff for
BO18380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:59 Download gff for
BO18380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 14..825 | 12..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:13 Download gff for
BO18380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 14..825 | 12..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:13 Download gff for
BO18380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7689988..7690107 | 704..823 | 100 | <- | Minus |
2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
2L | 7690879..7691048 | 12..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:59 Download gff for
BO18380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7689988..7690107 | 704..823 | 100 | <- | Minus |
arm_2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
arm_2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
arm_2L | 7690879..7691048 | 12..181 | 98 | | Minus |
BO18380.complete Sequence
1300 bp assembled on 2006-10-11
GenBank Submission: FJ634398
> BO18380.complete
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCAGTGAGACTTTTGCTGGGGATAACCCT
GAATCTGAGCCTGAAGCCAAGGCCTTGGTCGAGTACTTGACCAAAATCCA
GGACCAAATTAGTGTGTACATATCCTTCCACTCATATGGACAGTATTTGC
TTTCGCCCTACGGTCATACCAATGAGGAGTTCCCAGAAAATTACAATGAT
ATCCTGACTATTGGCAAAGCTTTTGCCGATGCCATTGAAGCACTGCCGTA
CGGAACCGTCTACCAGTATGGCTCTACAGCTGATGTGCTTTATGTGGCCA
CTGGAACCTCCGTGGACTGGGTGTTCAACGAGCTGGGCAAGAAGATCGGT
TACACAATCGAGTACCGTGATAAGGGTCGCTACGGCTTTATCCTGCCACC
AGTGCAGATCATTCCCAACTGCGAGGAGCTAATGGTTGGAATGCTGGCTT
TAATTGAAAAGACCAAGGAGTTGGGCTACTTGGCAAGCTTTCTAGACCAT
BO18380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1269 | CG18585-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG18585-RA | 1269 | CG18585-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-RB | 1423 | CG18585-RB | 19..1284 | 17..1282 | 6330 | 100 | Plus |
CG18585-RA | 1358 | CG18585-RA | 19..1284 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7689720..7690109 | 1091..702 | 1950 | 100 | Minus |
2L | 23513712 | 2L | 7690171..7690556 | 704..319 | 1930 | 100 | Minus |
2L | 23513712 | 2L | 7689450..7689640 | 1282..1092 | 955 | 100 | Minus |
2L | 23513712 | 2L | 7690879..7691043 | 181..17 | 825 | 100 | Minus |
2L | 23513712 | 2L | 7690682..7690821 | 319..180 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:59 has no hits.
BO18380.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:44 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:41 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 10..1284 | 12..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:03 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 19..1284 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:44 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 10..1284 | 12..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:15 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18585-RA | 19..1284 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:15 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
2L | 7690879..7691043 | 17..181 | 100 | | Minus |
2L | 7689448..7689640 | 1092..1284 | 98 | <- | Minus |
2L | 7689720..7690107 | 704..1091 | 100 | <- | Minus |
2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:03 Download gff for
BO18380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7689448..7689640 | 1092..1284 | 98 | <- | Minus |
arm_2L | 7689720..7690107 | 704..1091 | 100 | <- | Minus |
arm_2L | 7690172..7690556 | 319..703 | 100 | <- | Minus |
arm_2L | 7690683..7690819 | 182..318 | 100 | <- | Minus |
arm_2L | 7690879..7691043 | 17..181 | 100 | | Minus |
BO18380.pep Sequence
Translation from 16 to 1300
> BO18380.pep
MRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIG
ELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQ
ERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGK
SYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLLTSED
ADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADA
NRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISV
YISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQ
YGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPVQIIP
NCEELMVGMLALIEKTKELGYLASFLDH
BO18380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18585-PB | 422 | CG18585-PB | 1..422 | 1..422 | 2230 | 100 | Plus |
CG18585-PA | 422 | CG18585-PA | 1..422 | 1..422 | 2230 | 100 | Plus |
CG7025-PA | 429 | CG7025-PA | 8..423 | 6..422 | 1303 | 55.4 | Plus |
CG14820-PA | 416 | CG14820-PA | 2..416 | 6..422 | 952 | 45.2 | Plus |
CG12374-PA | 422 | CG12374-PA | 1..419 | 1..420 | 790 | 38.6 | Plus |