Clone BO18380 Report

Search the DGRC for BO18380

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG18585-RA
Protein status:BO18380.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO18380.3prime Sequence

749 bp (746 high quality bases) assembled on 2006-10-13

> BO18380.3prime
ATGGTCTAGAAAGCTTGCCAAGTAGCCCAACTCCTTGGTCTTTTCAATTA
AAGCCAGCATTCCAACCATTAGCTCCTCGCAGTTGGGAATGATCTGCACT
GGTGGCAGGATAAAGCCGTAGCGACCCTTATCACGGTACTCGATTGTGTA
ACCGATCTTCTTGCCCAGCTCGTTGAACACCCAGTCCACGGAGGTTCCAG
TGGCCACATAAAGCACATCAGCTGTAGAGCCATACTGGTAGACGGTTCCG
TACGGCAGTGCTTCAATGGCATCGGCAAAAGCTTTGCCAATAGTCAGGAT
ATCATTGTAATTTTCTGGGAACTCCTCATTGGTATGACCGTAGGGCGAAA
GCAAATACTGTCCATATGAGTGGAAGGATATGTACACACTAATTTGGTCC
TGGATTTTGGTCAAGTACTCGACCAAGGCCTTGGCTTCAGGCTCAGATTC
AGGGTTATCCCCAGCAAAAGTCTCACTGCAGGGATTGTCAGAGGCTCCAT
TGTTCTGGAGCCAATAGGAGTCGAAGTTCCTATTGGCGTCAGCTCCAATG
CATGCATTCGTGGCATGTGGCTGACGTGTTTTGCGCCACATACGATCCTT
CTTGTGTGAGTACTCAAAACCATCTACATTGAACACGGGAATTATATGCC
AATCATAGTTATCGGCCAAACTTCGCACATCGGCATCCTCTGAGGTCAAA
AGCTGATTGATGAACCATGTAGCACTGGCCGAAGTTATCCATTCTCTGG

BO18380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PA 1269 CG18585-RA 536..1266 749..19 3655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 554..1284 749..19 3655 100 Minus
CG18585-RA 1358 CG18585-RA 554..1284 749..19 3655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 210..599 1950 100 Plus
2L 23513712 2L 7689450..7689640 19..209 955 100 Plus
2L 23513712 2L 7690171..7690323 597..749 765 100 Plus
Blast to na_te.dros performed 2015-01-31 10:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2827..2862 285..250 108 77.8 Minus

BO18380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:03 Download gff for BO18380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-PA 536..1269 15..749 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:48 Download gff for BO18380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 554..1288 14..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:12 Download gff for BO18380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 554..1288 14..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:12 Download gff for BO18380.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7689446..7689640 14..209 98 <- Plus
2L 7689720..7690107 210..597 100 <- Plus
2L 7690172..7690323 598..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:48 Download gff for BO18380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689446..7689640 14..209 98 <- Plus
arm_2L 7689720..7690107 210..597 100 <- Plus
arm_2L 7690172..7690323 598..749 100   Plus

BO18380.5prime Sequence

824 bp (761 high quality bases) assembled on 2006-10-13

> BO18380.5prime
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCA

BO18380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PA 1269 CG18585-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 19..826 17..824 4040 100 Plus
CG18585-RA 1358 CG18585-RA 19..826 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7690171..7690556 704..319 1930 100 Minus
2L 23513712 2L 7690879..7691043 181..17 825 100 Minus
2L 23513712 2L 7690682..7690821 319..180 700 100 Minus
2L 23513712 2L 7689987..7690109 824..702 615 100 Minus
Blast to na_te.dros performed 2015-02-12 11:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
micropia 5461 micropia DMDM11 5461bp 324..379 57..1 111 70.7 Minus
micropia 5461 micropia DMDM11 5461bp 5309..5364 57..1 111 70.7 Minus

BO18380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:04 Download gff for BO18380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:59 Download gff for BO18380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 14..825 12..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:13 Download gff for BO18380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 14..825 12..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:13 Download gff for BO18380.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7689988..7690107 704..823 100 <- Minus
2L 7690172..7690556 319..703 100 <- Minus
2L 7690683..7690819 182..318 100 <- Minus
2L 7690879..7691048 12..181 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:59 Download gff for BO18380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689988..7690107 704..823 100 <- Minus
arm_2L 7690172..7690556 319..703 100 <- Minus
arm_2L 7690683..7690819 182..318 100 <- Minus
arm_2L 7690879..7691048 12..181 98   Minus

BO18380.complete Sequence

1300 bp assembled on 2006-10-11

GenBank Submission: FJ634398

> BO18380.complete
GAAGTTATCAGTCGACATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGG
CTCTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGAT
AACTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGC
GATCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGT
ATGACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTT
AACCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTAT
GATCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTG
CAGATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATT
GAGGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGA
GTTCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGA
TCTCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCAT
GCCAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCT
TTTGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATT
GGCATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAG
AAGGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATG
CATTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACA
ATGGAGCCTCTGACAATCCCTGCAGTGAGACTTTTGCTGGGGATAACCCT
GAATCTGAGCCTGAAGCCAAGGCCTTGGTCGAGTACTTGACCAAAATCCA
GGACCAAATTAGTGTGTACATATCCTTCCACTCATATGGACAGTATTTGC
TTTCGCCCTACGGTCATACCAATGAGGAGTTCCCAGAAAATTACAATGAT
ATCCTGACTATTGGCAAAGCTTTTGCCGATGCCATTGAAGCACTGCCGTA
CGGAACCGTCTACCAGTATGGCTCTACAGCTGATGTGCTTTATGTGGCCA
CTGGAACCTCCGTGGACTGGGTGTTCAACGAGCTGGGCAAGAAGATCGGT
TACACAATCGAGTACCGTGATAAGGGTCGCTACGGCTTTATCCTGCCACC
AGTGCAGATCATTCCCAACTGCGAGGAGCTAATGGTTGGAATGCTGGCTT
TAATTGAAAAGACCAAGGAGTTGGGCTACTTGGCAAGCTTTCTAGACCAT

BO18380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1269 CG18585-PB 1..1266 17..1282 6330 100 Plus
CG18585-RA 1269 CG18585-PA 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RB 1423 CG18585-RB 19..1284 17..1282 6330 100 Plus
CG18585-RA 1358 CG18585-RA 19..1284 17..1282 6330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 1091..702 1950 100 Minus
2L 23513712 2L 7690171..7690556 704..319 1930 100 Minus
2L 23513712 2L 7689450..7689640 1282..1092 955 100 Minus
2L 23513712 2L 7690879..7691043 181..17 825 100 Minus
2L 23513712 2L 7690682..7690821 319..180 700 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:59 has no hits.

BO18380.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:44 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:41 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 10..1284 12..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:03 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 19..1284 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:44 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 10..1284 12..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:15 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 19..1284 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:15 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7690683..7690819 182..318 100 <- Minus
2L 7690879..7691043 17..181 100   Minus
2L 7689448..7689640 1092..1284 98 <- Minus
2L 7689720..7690107 704..1091 100 <- Minus
2L 7690172..7690556 319..703 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:03 Download gff for BO18380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689448..7689640 1092..1284 98 <- Minus
arm_2L 7689720..7690107 704..1091 100 <- Minus
arm_2L 7690172..7690556 319..703 100 <- Minus
arm_2L 7690683..7690819 182..318 100 <- Minus
arm_2L 7690879..7691043 17..181 100   Minus

BO18380.pep Sequence

Translation from 16 to 1300

> BO18380.pep
MRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIG
ELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQ
ERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGK
SYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLLTSED
ADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADA
NRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISV
YISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQ
YGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPVQIIP
NCEELMVGMLALIEKTKELGYLASFLDH

BO18380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PB 422 CG18585-PB 1..422 1..422 2230 100 Plus
CG18585-PA 422 CG18585-PA 1..422 1..422 2230 100 Plus
CG7025-PA 429 CG7025-PA 8..423 6..422 1303 55.4 Plus
CG14820-PA 416 CG14820-PA 2..416 6..422 952 45.2 Plus
CG12374-PA 422 CG12374-PA 1..419 1..420 790 38.6 Plus