Clone BO18382 Report

Search the DGRC for BO18382

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG8005-RA
Protein status:BO18382.pep: validated full length
Sequenced Size:1138

Clone Sequence Records

BO18382.3prime Sequence

719 bp (717 high quality bases) assembled on 2006-10-13

> BO18382.3prime
ATGGTCTAGAAAGCTTGCCACTTGGTTAGTCTCTCGGGGCAGCTCTTTGC
CGGCGCAGTGATGCCGCTTGGCGAATGTTTCACCCACAATCAACGGAAAG
ACCAAGCTAGCCTCGGCATACACCTTAACAGGGGTGGCATCCTTCCTGAT
CTTGCCCCACGATATAGCCTCATCCGGTCGAGCGCCGCTATCGCTGCCGT
CAAACTCCGAGGCAGTATTAATGAACACTGAGTAATCCGCTCCATTGCGC
ATCAGATTGGCATTACAAATGTGATGCTTGATAACGCCGCCGCCCACGAT
GATCATCCCGCTGTTGACCGCCTTGACAGCCATGGTGTTGAGCCTCCGCA
GATCGGACAGAATGTCCACCACGAGTCCAGGTTGTCGAAAGGAGTGAAAG
TACATCATGTCGCCCAGACTGCCATCCGTCAAGGCGGGACAAAAGACTGG
TATTTGATTCTTGGCAGCCCAATAGTAAATGGAACTAGGATCGCCAATCC
GTTCGCCCAACCGATGAATAATCTTCGACGGCGACCAGATAGTTCCCTGG
GATTTTTGCTCCTCCAGCATCTCGTCCAGCAGCGGCATCACCCAGTCCTC
GAACTTACAGTAATTATCGTTCGGCACCAGAAGGTTGCCAATTCTGTTGA
TTCCACGCTCGCGGAGATCCCTGCCACTCAGCTCAAATGACCCCATGAGC
GTGGGAGCCAAGCACTTGA

BO18382.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-PA 1107 CG8005-RA 404..1104 719..19 3455 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-RB 1216 CG8005-RB 478..1178 719..19 3475 99.7 Minus
CG8005-RA 1227 CG8005-RA 489..1189 719..19 3475 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8198753..8199453 719..19 3475 99.7 Minus
Blast to na_te.dros performed 2015-02-10 16:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 608..663 284..339 109 66.1 Plus

BO18382.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:04 Download gff for BO18382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-PA 405..1107 15..718 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:27 Download gff for BO18382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 490..1192 15..718 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:10 Download gff for BO18382.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 490..1192 15..718 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:10 Download gff for BO18382.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8198754..8199456 15..718 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:27 Download gff for BO18382.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8191854..8192556 15..718 99   Minus

BO18382.5prime Sequence

789 bp (727 high quality bases) assembled on 2006-10-13

> BO18382.5prime
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCT

BO18382.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-PA 1107 CG8005-RA 1..773 17..789 3865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-RA 1227 CG8005-RA 86..858 17..789 3865 100 Plus
CG8005-RB 1216 CG8005-RB 86..847 17..789 3690 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8198541..8199122 208..789 2910 100 Plus
3L 28110227 3L 8198292..8198483 17..208 960 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:05 has no hits.

BO18382.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:05 Download gff for BO18382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-PA 1..773 17..789 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:13 Download gff for BO18382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 86..858 17..789 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:53 Download gff for BO18382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 86..858 17..789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:53 Download gff for BO18382.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8198292..8198483 17..208 100 -> Plus
3L 8198542..8199122 209..789 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:13 Download gff for BO18382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8191392..8191583 17..208 100 -> Plus
arm_3L 8191642..8192222 209..789 100   Plus

BO18382.complete Sequence

1138 bp assembled on 2006-10-11

GenBank Submission: FJ634399

> BO18382.complete
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCTGCGGAGGCTCA
ACACCATGGCTGTCAAGGCGGTCAACAGCGGGATGATCATCGTGGGCGGC
GGCGTTATCAAGCATCACATTTGTAATGCCAATCTGATGCGCAATGGAGC
GGATTACTCAGTGTTCATTAATACTGCCTCGGAGTTTGACGGCAGCGATA
GCGGCGCTCGACCGGATGAGGCTATATCGTGGGGCAAGATCAGGAAGGAT
GCCACCCCTGTTAAGGTGTATGCCGAGGCTAGCTTGGTCTTTCCGTTGAT
TGTGGGTGAAACATTCGCCAAGCGGCATCACTGCGCCGGCAAAGAGCTGC
CCCGAGAGACTAACCAAGTGGCAAGCTTTCTAGACCAT

BO18382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-RA 1107 CG8005-PA 1..1104 17..1120 5520 100 Plus
CG8005-RB 231 CG8005-PB 1..231 17..258 1010 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-RA 1227 CG8005-RA 86..1189 17..1120 5520 100 Plus
CG8005-RB 1216 CG8005-RB 86..1178 17..1120 5320 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8198541..8199453 208..1120 4565 100 Plus
3L 28110227 3L 8198292..8198483 17..208 960 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:36:57 has no hits.

BO18382.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:45 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 17..1124 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:43 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 84..1190 17..1124 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:12 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 86..1189 17..1122 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:45 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 84..1190 17..1124 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:58 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 86..1189 17..1122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:58 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8198292..8198483 17..208 100 -> Plus
3L 8198542..8199453 209..1122 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:12 Download gff for BO18382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8191392..8191583 17..208 100 -> Plus
arm_3L 8191642..8192553 209..1122 99   Plus

BO18382.pep Sequence

Translation from 16 to 1138

> BO18382.pep
MSTEPSVAKDAVLKRSEALAENTPQVSGYDFNEGLDYSKLFESYVNTGFQ
ATNLGLAIREINRMLDCRDQPLEADQIDSHETDDFIRRRSKCTVFLGYTS
NLVSSGLRETIRFLAEHRMIDCIVTTAGGVEEDFIKCLAPTFMGSFELSG
RDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQGTIWSPSK
IIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFHSFRQPGL
VVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVF
INTASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETF
AKRHHCAGKELPRETNQVASFLDH

BO18382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-PA 368 CG8005-PA 1..368 1..368 1926 100 Plus
CG8005-PB 76 CG8005-PB 1..64 1..64 321 100 Plus