Clone Sequence Records
BO18382.3prime Sequence
719 bp (717 high quality bases) assembled on 2006-10-13
> BO18382.3prime
ATGGTCTAGAAAGCTTGCCACTTGGTTAGTCTCTCGGGGCAGCTCTTTGC
CGGCGCAGTGATGCCGCTTGGCGAATGTTTCACCCACAATCAACGGAAAG
ACCAAGCTAGCCTCGGCATACACCTTAACAGGGGTGGCATCCTTCCTGAT
CTTGCCCCACGATATAGCCTCATCCGGTCGAGCGCCGCTATCGCTGCCGT
CAAACTCCGAGGCAGTATTAATGAACACTGAGTAATCCGCTCCATTGCGC
ATCAGATTGGCATTACAAATGTGATGCTTGATAACGCCGCCGCCCACGAT
GATCATCCCGCTGTTGACCGCCTTGACAGCCATGGTGTTGAGCCTCCGCA
GATCGGACAGAATGTCCACCACGAGTCCAGGTTGTCGAAAGGAGTGAAAG
TACATCATGTCGCCCAGACTGCCATCCGTCAAGGCGGGACAAAAGACTGG
TATTTGATTCTTGGCAGCCCAATAGTAAATGGAACTAGGATCGCCAATCC
GTTCGCCCAACCGATGAATAATCTTCGACGGCGACCAGATAGTTCCCTGG
GATTTTTGCTCCTCCAGCATCTCGTCCAGCAGCGGCATCACCCAGTCCTC
GAACTTACAGTAATTATCGTTCGGCACCAGAAGGTTGCCAATTCTGTTGA
TTCCACGCTCGCGGAGATCCCTGCCACTCAGCTCAAATGACCCCATGAGC
GTGGGAGCCAAGCACTTGA
BO18382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-PA | 1107 | CG8005-RA | 404..1104 | 719..19 | 3455 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-RB | 1216 | CG8005-RB | 478..1178 | 719..19 | 3475 | 99.7 | Minus |
CG8005-RA | 1227 | CG8005-RA | 489..1189 | 719..19 | 3475 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8198753..8199453 | 719..19 | 3475 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-10 16:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 608..663 | 284..339 | 109 | 66.1 | Plus |
BO18382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:04 Download gff for
BO18382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-PA | 405..1107 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:27 Download gff for
BO18382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 490..1192 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:10 Download gff for
BO18382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 490..1192 | 15..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:10 Download gff for
BO18382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8198754..8199456 | 15..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:27 Download gff for
BO18382.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8191854..8192556 | 15..718 | 99 | | Minus |
BO18382.5prime Sequence
789 bp (727 high quality bases) assembled on 2006-10-13
> BO18382.5prime
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCT
BO18382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-PA | 1107 | CG8005-RA | 1..773 | 17..789 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-RA | 1227 | CG8005-RA | 86..858 | 17..789 | 3865 | 100 | Plus |
CG8005-RB | 1216 | CG8005-RB | 86..847 | 17..789 | 3690 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8198541..8199122 | 208..789 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 8198292..8198483 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:05 has no hits.
BO18382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:05 Download gff for
BO18382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-PA | 1..773 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:13 Download gff for
BO18382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 86..858 | 17..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:53 Download gff for
BO18382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 86..858 | 17..789 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:53 Download gff for
BO18382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8198292..8198483 | 17..208 | 100 | -> | Plus |
3L | 8198542..8199122 | 209..789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:13 Download gff for
BO18382.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8191392..8191583 | 17..208 | 100 | -> | Plus |
arm_3L | 8191642..8192222 | 209..789 | 100 | | Plus |
BO18382.complete Sequence
1138 bp assembled on 2006-10-11
GenBank Submission: FJ634399
> BO18382.complete
GAAGTTATCAGTCGACATGTCGACGGAGCCATCGGTGGCCAAGGATGCTG
TGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACACGCCCCAAGTTAGTGGC
TACGATTTCAACGAAGGCTTAGACTACAGTAAGCTCTTCGAATCCTATGT
GAACACCGGGTTTCAGGCCACGAATCTTGGCCTGGCCATTCGGGAAATTA
ACAGAATGCTGGATTGCAGGGACCAGCCATTGGAAGCGGACCAAATAGAC
AGCCATGAAACAGACGACTTCATCCGTCGAAGAAGCAAGTGCACCGTATT
TTTGGGCTACACATCCAACTTGGTTTCGTCCGGACTGCGAGAGACCATTC
GCTTTCTGGCCGAGCACCGTATGATCGACTGCATTGTGACCACAGCTGGC
GGCGTCGAGGAGGACTTCATCAAGTGCTTGGCTCCCACGTTCATGGGTTC
ATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCGTGGAATCAACAGAATTG
GCAACCTTCTGGTGCCGAACGATAATTACTGTAAGTTCGAGGACTGGGTG
ATGCCGCTGCTGGACGAGATGCTGGAGGAGCAAAAATCCCAGGGAACTAT
CTGGTCGCCGTCGAAGATTATTCATCGGTTGGGCGAACGGATTGGCGATC
CTAGTTCCATTTACTATTGGGCTGCCAAGAATCAAATACCAGTCTTTTGT
CCCGCCTTGACGGATGGCAGTCTGGGCGACATGATGTACTTTCACTCCTT
TCGACAACCTGGACTCGTGGTGGACATTCTGTCCGATCTGCGGAGGCTCA
ACACCATGGCTGTCAAGGCGGTCAACAGCGGGATGATCATCGTGGGCGGC
GGCGTTATCAAGCATCACATTTGTAATGCCAATCTGATGCGCAATGGAGC
GGATTACTCAGTGTTCATTAATACTGCCTCGGAGTTTGACGGCAGCGATA
GCGGCGCTCGACCGGATGAGGCTATATCGTGGGGCAAGATCAGGAAGGAT
GCCACCCCTGTTAAGGTGTATGCCGAGGCTAGCTTGGTCTTTCCGTTGAT
TGTGGGTGAAACATTCGCCAAGCGGCATCACTGCGCCGGCAAAGAGCTGC
CCCGAGAGACTAACCAAGTGGCAAGCTTTCTAGACCAT
BO18382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-RA | 1107 | CG8005-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
CG8005-RB | 231 | CG8005-PB | 1..231 | 17..258 | 1010 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-RA | 1227 | CG8005-RA | 86..1189 | 17..1120 | 5520 | 100 | Plus |
CG8005-RB | 1216 | CG8005-RB | 86..1178 | 17..1120 | 5320 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8198541..8199453 | 208..1120 | 4565 | 100 | Plus |
3L | 28110227 | 3L | 8198292..8198483 | 17..208 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:36:57 has no hits.
BO18382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:45 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 1..1107 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:43 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 84..1190 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:12 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 86..1189 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:45 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 84..1190 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:58 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8005-RA | 86..1189 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:58 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8198292..8198483 | 17..208 | 100 | -> | Plus |
3L | 8198542..8199453 | 209..1122 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:12 Download gff for
BO18382.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8191392..8191583 | 17..208 | 100 | -> | Plus |
arm_3L | 8191642..8192553 | 209..1122 | 99 | | Plus |
BO18382.pep Sequence
Translation from 16 to 1138
> BO18382.pep
MSTEPSVAKDAVLKRSEALAENTPQVSGYDFNEGLDYSKLFESYVNTGFQ
ATNLGLAIREINRMLDCRDQPLEADQIDSHETDDFIRRRSKCTVFLGYTS
NLVSSGLRETIRFLAEHRMIDCIVTTAGGVEEDFIKCLAPTFMGSFELSG
RDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQGTIWSPSK
IIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFHSFRQPGL
VVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVF
INTASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETF
AKRHHCAGKELPRETNQVASFLDH
BO18382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8005-PA | 368 | CG8005-PA | 1..368 | 1..368 | 1926 | 100 | Plus |
CG8005-PB | 76 | CG8005-PB | 1..64 | 1..64 | 321 | 100 | Plus |