Clone Sequence Records
BO18384.3prime Sequence
733 bp (720 high quality bases) assembled on 2006-10-13
> BO18384.3prime
ATGGTCTAGAAAGCTTGCGTGATTATGTCCAAATGTTATAATTAGGGGTA
GCAGTGCGCCGCAAATCAGAATTACCAATTCACTATATTTTAGTGCTTGA
ATACTATTGCTTCCATTTATATCATTCGTAGCAACACCTCGAGATTCCTC
TAGCAAACAATAATCATGCTGATCGCTTTTCGTAAATCCCCCTTGGGTAA
GCTCTGGTAAAACATGCACAGTTGCTACGTACAAAAATGTTCCAGCGGAG
AATAGCATAGCTATACCAGTGGCATTCACGGAATTTAACGTGTCCTTCTG
CTCCTGTCCGATCCCAAAATACGTTAAAATAGTCATAAGGGGAGCCGACA
GGGAAAATAAGACTAGGTGTCTGCGAATTTGATGTCTGTCTACTTTTTCG
TGCAGTAAGAATGTCACTAATCCAAATGCTGCTGGTGCCTTATGAAGCAT
TATAGCTAAAAATACAATTATCTCAACGTCTTGATGGCTAGTGGTGGCAG
CTGCTCCCAATGCAACTCCATCAGCTGCGGCATGCACAACCAATCCAAGA
GTTAGTGTGGCATTGTTTTTTTTATTACTTCCAACATTACTCTTCCGCTG
AGAGATGTCCACCAACATCATGAAGACAAATCCAAGCACAAGAGAAAGTC
CCATGGTCTGTGAGTAATCTGGTTGCTCCGGAACTGATGTCCGTTTTTTG
GGGATTGGCCACTCCCCCACATACAATGAATCG
BO18384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2177-PA | 930 | CG2177-RA | 248..927 | 698..19 | 3375 | 99.8 | Minus |
| CG2177-PB | 606 | CG2177-RB | 1..603 | 621..19 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RD | 2723 | CG2177-RD | 153..860 | 729..19 | 3475 | 99.4 | Minus |
| Zip102B-RF | 2995 | CG2177-RF | 425..1132 | 729..19 | 3475 | 99.4 | Minus |
| Zip102B-RE | 2821 | CG2177-RE | 251..958 | 729..19 | 3475 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 312793..313302 | 19..528 | 2550 | 100 | Plus |
| 4 | 1348131 | 4 | 313357..313558 | 525..729 | 895 | 98 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:45:51 has no hits.
BO18384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:06 Download gff for
BO18384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-PA | 217..930 | 18..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:35 Download gff for
BO18384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RE | 248..958 | 19..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:57 Download gff for
BO18384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip102B-RE | 248..958 | 19..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:57 Download gff for
BO18384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 312791..313298 | 18..524 | 99 | <- | Plus |
| 4 | 313357..313561 | 525..733 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:35 Download gff for
BO18384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 333417..333924 | 18..524 | 99 | <- | Plus |
| arm_4 | 333983..334187 | 525..733 | 97 | | Plus |
BO18384.5prime Sequence
756 bp (734 high quality bases) assembled on 2006-10-13
> BO18384.5prime
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGG
TTTACC
BO18384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2177-PA | 930 | CG2177-RA | 1..740 | 17..756 | 3675 | 99.8 | Plus |
| CG2177-PB | 606 | CG2177-RB | 1..416 | 341..756 | 2055 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RF | 2995 | CG2177-RF | 206..945 | 17..756 | 3685 | 99.9 | Plus |
| Zip102B-RE | 2821 | CG2177-RE | 32..771 | 17..756 | 3685 | 99.9 | Plus |
| Zip102B-RB | 2870 | CG2177-RB | 213..820 | 149..756 | 3025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 312980..313302 | 756..434 | 1600 | 99.7 | Minus |
| 4 | 1348131 | 4 | 313357..313644 | 437..150 | 1440 | 100 | Minus |
| 4 | 1348131 | 4 | 313747..313882 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:41:51 has no hits.
BO18384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:07 Download gff for
BO18384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-PA | 1..740 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:39 Download gff for
BO18384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RE | 32..771 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:44 Download gff for
BO18384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip102B-RE | 32..771 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:44 Download gff for
BO18384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 312980..313298 | 438..756 | 99 | <- | Minus |
| 4 | 313357..313642 | 152..437 | 100 | <- | Minus |
| 4 | 313748..313882 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:39 Download gff for
BO18384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 333606..333924 | 438..756 | 99 | <- | Minus |
| arm_4 | 333983..334268 | 152..437 | 100 | <- | Minus |
| arm_4 | 334374..334508 | 17..151 | 100 | | Minus |
BO18384.complete Sequence
961 bp assembled on 2006-10-11
GenBank Submission: FJ634400
> BO18384.complete
GAAGTTATCAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAA
TCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTT
GTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGA
GGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAA
CTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGG
AGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTC
ACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGG
TGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAAT
GCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGC
ATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTAT
TTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACA
TTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGT
CTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGA
TCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATA
GCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGT
TTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATT
ATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAATGATATAAATGGA
AGCAATAGTATTCAAGCACTAAAATATAGTGAATTGGTAATTCTGATTTG
CGGCGCACTGCTACCCCTAATTATAACATTTGGACATAATCACGCAAGCT
TTCTAGACCAT
BO18384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RF | 894 | CG2177-PF | 1..891 | 53..943 | 4455 | 100 | Plus |
| Zip102B-RE | 894 | CG2177-PE | 1..891 | 53..943 | 4455 | 100 | Plus |
| Zip102B-RD | 606 | CG2177-PD | 1..603 | 341..943 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RF | 2995 | CG2177-RF | 206..1132 | 17..943 | 4635 | 100 | Plus |
| Zip102B-RE | 2821 | CG2177-RE | 32..958 | 17..943 | 4635 | 100 | Plus |
| Zip102B-RB | 2870 | CG2177-RB | 213..1007 | 149..943 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 312793..313302 | 943..434 | 2550 | 100 | Minus |
| 4 | 1348131 | 4 | 313357..313644 | 437..150 | 1440 | 100 | Minus |
| 4 | 1348131 | 4 | 313747..313882 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:34 has no hits.
BO18384.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:07 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RA | 1..930 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:21 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RA | 27..953 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:16 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RE | 32..958 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:08 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RA | 27..953 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:42 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip102B-RE | 32..958 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:42 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 313357..313642 | 152..437 | 100 | <- | Minus |
| 4 | 313748..313882 | 17..151 | 100 | | Minus |
| 4 | 312791..313298 | 438..945 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:16 Download gff for
BO18384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 333417..333924 | 438..945 | 99 | <- | Minus |
| arm_4 | 333983..334268 | 152..437 | 100 | <- | Minus |
| arm_4 | 334374..334508 | 17..151 | 100 | | Minus |
BO18384.pep Sequence
Translation from 16 to 961
> BO18384.pep
MVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMKLSEEKLKC
VTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQPDYSQTIGL
SLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAADGVALGAAA
TTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRRHLVLFSLS
APLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVATVHVLPELT
QGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVILICGALLP
LIITFGHNHASFLDH
BO18384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-PF | 297 | CG2177-PF | 1..297 | 13..309 | 1471 | 100 | Plus |
| Zip102B-PE | 297 | CG2177-PE | 1..297 | 13..309 | 1471 | 100 | Plus |
| Zip102B-PD | 201 | CG2177-PD | 1..201 | 109..309 | 1010 | 100 | Plus |
| Zip102B-PB | 201 | CG2177-PB | 1..201 | 109..309 | 1010 | 100 | Plus |
