Clone Sequence Records
BO18387.3prime Sequence
771 bp (664 high quality bases) assembled on 2006-10-13
> BO18387.3prime
ATGGTCTAGAAAGCTTGCTATCGATGCGCCCACATAGGCCAGTGCCCGTT
CCGCCTCAAACGCGGCGACATATTGAGGCTCTAGGGTGCTGAGAGCCCGC
TGGGTGAGCAGGGAGATGTTCTTCGCCTCGCCGTGATCTCGCTCGAAGGC
GAGATACTCCACCCAAACGCGCGGCTGTGTCTTGCCGAAATAGCAGGCCA
TAAAGTCGTAGCACATGCGCCAGTATTTCAGGCTGGCCTGGTCACAAGCT
GCCGCACTGGACTCCAGCTGAACCATTTGGCGGTGCAGCGCCAACGACAT
GGGCGGTAGAATGGCCAGCTTGGCGTACTCCTTGCGTGCTTCCTCGACAG
ACCGCTCCTGCCACAGATAGCGCAAATAATCGGAGCGCAGCTCACCAAAT
TCCGGCCACGCAGCCTTGCAGGCGAGACCGTAGATCTCATCCAGCCGGCG
TGCGCCCAAGCTATCCTGCCGAGTGCGATAATACAGAATGACACTGCGCC
ACAGCGGCAACGCCTCACTGCCCATGCTCTTCTGGATCTTGTTGAATAGC
TCATAGATCAAGGGCTCACTGTCGCTTTGAATGTGCGTGGCCAGAAGAAG
CTCGTGCATCTCCACCGATGAATCGTTTTTCAGGGCTTCCGTGAGTATGG
TGACAGCTGCCTCCCTTCCACTCGGAGCAGTGCAGAGCATCTTTCTTAAT
GTGGCATAGTGTTTCACGCCCATCAACTGAGAGCGATGGCCCGCCTGCCA
GGCATCCGCTAGGCACTGTTG
BO18387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 1809 | CG7246-RA | 1054..1806 | 771..19 | 3740 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 1164..1916 | 771..19 | 3750 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079245..9079773 | 243..771 | 2630 | 99.8 | Plus |
| X | 23542271 | X | 9078950..9079174 | 19..243 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:47:43 has no hits.
BO18387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:08 Download gff for
BO18387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-PA | 1054..1809 | 18..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:28:58 Download gff for
BO18387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1164..1921 | 11..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:48 Download gff for
BO18387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1164..1921 | 11..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:48 Download gff for
BO18387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9078945..9079174 | 11..243 | 98 | <- | Plus |
| X | 9079246..9079773 | 244..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:28:58 Download gff for
BO18387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8972978..8973207 | 11..243 | 98 | <- | Plus |
| arm_X | 8973279..8973806 | 244..771 | 99 | | Plus |
BO18387.5prime Sequence
801 bp (775 high quality bases) assembled on 2006-10-13
> BO18387.5prime
GAAGTTATCAGTCGACATGGCCGAGTTCATAGCTGAGATGCAGGAGCGCC
TGCTGCCGGAATACGAGCAGATGAAGAACTACAGCGTATTCACAGCGGAT
CAGGTCAGAGAAATCGTTAGCAGGCGGGAACGCTTGTTCCTTAAGATCAA
CAAGAGCCACCAGAGCATCACCGACTACCTGGACTTCATACTGTACGAGA
AGCACATGCACATGACCATCGTGGACAAGGAAAAGAAGATGCACGTTAAA
CTCACCGGTCTAAAGGCCTCCATAGCCACGCGGATCATGCGCCTGTACAG
AGAGGCCTTGGCTAAGTTTAACCACGACAGACGGCTGTGGAGCAACTGGA
TCAAGTTCAGCAGGAAGTCAAATCCTGTCGAGGTGGCGGGCATATACGAG
AAGATGCTGCTGTACCATGGCGACTCGCCGGATCTTTGGGTGGACGCCGC
CTTATGGCTGTACGAGTTCAATCGGCTCAACATCGATCGAGTCAAGGACA
TCCTGCTGCGTGGCTTGCAGAGACATCCGGATTCCGAGGCACTTAACAAG
TGCTTCTTTGACATTATGCTGAAAGAGGCTGCCCTGGCCAGCAACGAACG
CAATTTAGCCGAGAATACGCTCTCGGAACAGGACATCAAATTGGAACGCG
TGGAGGCGGTCTACCGCAACAGCATGGCCAATATTACCCAATTGGACTAC
TTTGTTAAGCTTCTAGAAAGCTGTGAGGATCATCAGGAGCTGACGGGCAA
GCTGCAGCGAATGATAATCGATGATATGCAAGAGAAGTTCCCCCGGGAGC
C
BO18387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 1809 | CG7246-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..895 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9080042..9080435 | 801..408 | 1955 | 99.7 | Minus |
| X | 23542271 | X | 9080495..9080801 | 412..106 | 1535 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:48:35 has no hits.
BO18387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:08 Download gff for
BO18387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:29:04 Download gff for
BO18387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..895 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:37 Download gff for
BO18387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..895 | 10..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:37 Download gff for
BO18387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9080042..9080430 | 413..801 | 100 | <- | Minus |
| X | 9080495..9080798 | 109..412 | 100 | <- | Minus |
| X | 9080856..9080954 | 10..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:29:04 Download gff for
BO18387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8974075..8974463 | 413..801 | 100 | <- | Minus |
| arm_X | 8974528..8974831 | 109..412 | 100 | <- | Minus |
| arm_X | 8974889..8974987 | 10..108 | 96 | | Minus |
BO18387.complete Sequence
1840 bp assembled on 2006-12-18
GenBank Submission: FJ634401
> BO18387.complete
GAAGTTATCAGTCGACATGGCCGAGTTCATAGCTGAGATGCAGGAGCGCC
TGCTGCCGGAATACGAGCAGATGAAGAACTACAGCGTATTCACAGCGGAT
CAGGTCAGAGAAATCGTTAGCAGGCGGGAACGCTTGTTCCTTAAGATCAA
CAAGAGCCACCAGAGCATCACCGACTACCTGGACTTCATACTGTACGAGA
AGCACATGCACATGACCATCGTGGACAAGGAAAAGAAGATGCACGTTAAA
CTCACCGGTCTAAAGGCCTCCATAGCCACGCGGATCATGCGCCTGTACAG
AGAGGCCTTGGCTAAGTTTAACCACGACAGACGGCTGTGGAGCAACTGGA
TCAAGTTCAGCAGGAAGTCAAATCCTGTCGAGGTGGCGGGCATATACGAG
AAGATGCTGCTGTACCATGGCGACTCGCCGGATCTTTGGGTGGACGCCGC
CTTATGGCTGTACGAGTTCAATCGGCTCAACATCGATCGAGTCAAGGACA
TCCTGCTGCGTGGCTTGCAGAGACATCCGGATTCCGAGGCACTTAACAAG
TGCTTCTTTGACATTATGCTGAAAGAGGCTGCCCTGGCCAGCAACGAACG
CAATTTAGCCGAGAATACGCTCTCGGAACAGGACATCAAATTGGAACGCG
TGGAGGCGGTCTACCGCAACAGCATGGCCAATATTACCCAATTGGACTAC
TTTGTTAAGCTTCTAGAAAGCTGTGAGGATCATCAGGAGCTGACGGGCAA
GCTGCAGCGAATGATAATCGATGATATGCAAGAGAAGTTCCCCCGGGAGC
CGGGCCTGTGGGATTTGCTTGCCCAGCGAGAGTTGCGCGGCTTTCATCTG
GGCGACCTGGAGGAGGAGGACTTGGATACCAGTGACGAAGAGCCGGCCAG
CAAGAAATCTCGTTCCGTAAATGGCCGCTCTCTCAAGCGACGCATTCAAC
TCTGCGTTACTGTATACAAATCGGCGGTGGAGGAGCTGCAAACGACAGAA
ATGTGGAATATGTATTTGGATGCCATGCTGGCACTCAATAGCGATGGAAA
GACGGAGCGTATACTAAAGCAACAGTGCCTAGCGGATGCCTTGCAGGCGG
GCCATCGCTCTCAGTTGATGGGCGTGAAACACTATGCCACATTAAGAAAG
ATGCTCTGCACTGCTCCGAGTGGAAGGGAGGCAGCTGTCACCATACTCAC
GGAAGCCCTGAAAAACGATTCATCGGTGGAGATGCACGAGCTTCTTCTGG
CCACGCACATTCAAAGCGACAGTGAGCCCTTGATCTATGAGCTATTCAAC
AAGATCCAGAAGAGCATGGGCAGTGAGGCGTTGCCGCTGTGGCGCAGTGT
CATTCTGTATTATCGCACTCGGCAGGATAGCTTGGGCGCACGCCGGCTGG
ATGAGATCTACGGTCTCGCCTGCAAGGCTGCGTGGCCGGAATTTGGTGAG
CTGCGCTCCGATTATTTGCGCTATCTGTGGCAGGAGCGGTCTGTCGAGGA
AGCACGCAAGGAGTACGCCAAGCTGGCCATTCTACCGCCCATGTCGTTGG
CGCTGCACCGCCAAATGGTTCAGCTGGAGTCCAGTGCGGCAGCTTGTGAC
CAGGCCAGCCTGAAATACTGGCGCATGTGCTACGACTTTATGGCCTGCTA
TTTCGGCAAGACACAGCCGCGCGTTTGGGTGGAGTATCTCGCCTTCGAGC
GAGATCACGGCGAGGCGAAGAACATCTCCCTGCTCACCCAGCGGGCTCTC
AGCACCCTAGAGCCTCAATATGTCGCCGCGTTTGAGGCGGAACGGGCACT
GGCCTATGTGGGCGCATCGATAGCAAGCTTTCTAGACCAT
BO18387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 1809 | CG7246-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..1916 | 17..1822 | 9030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079245..9080435 | 1598..408 | 5940 | 99.9 | Minus |
| X | 23542271 | X | 9080495..9080801 | 412..106 | 1535 | 100 | Minus |
| X | 23542271 | X | 9078950..9079174 | 1822..1598 | 1125 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:16 has no hits.
BO18387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:41 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 1..1809 | 17..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:07 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 89..1906 | 10..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:18 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 111..1916 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:41 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 89..1906 | 10..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:47 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 111..1916 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:47 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9078948..9079174 | 1598..1824 | 99 | <- | Minus |
| X | 9079246..9080430 | 413..1597 | 100 | <- | Minus |
| X | 9080495..9080798 | 109..412 | 100 | <- | Minus |
| X | 9080856..9080947 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:18 Download gff for
BO18387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8972981..8973207 | 1598..1824 | 99 | <- | Minus |
| arm_X | 8973279..8974463 | 413..1597 | 100 | <- | Minus |
| arm_X | 8974528..8974831 | 109..412 | 100 | <- | Minus |
| arm_X | 8974889..8974980 | 17..108 | 100 | | Minus |
BO18387.pep Sequence
Translation from 16 to 1840
> BO18387.pep
MAEFIAEMQERLLPEYEQMKNYSVFTADQVREIVSRRERLFLKINKSHQS
ITDYLDFILYEKHMHMTIVDKEKKMHVKLTGLKASIATRIMRLYREALAK
FNHDRRLWSNWIKFSRKSNPVEVAGIYEKMLLYHGDSPDLWVDAALWLYE
FNRLNIDRVKDILLRGLQRHPDSEALNKCFFDIMLKEAALASNERNLAEN
TLSEQDIKLERVEAVYRNSMANITQLDYFVKLLESCEDHQELTGKLQRMI
IDDMQEKFPREPGLWDLLAQRELRGFHLGDLEEEDLDTSDEEPASKKSRS
VNGRSLKRRIQLCVTVYKSAVEELQTTEMWNMYLDAMLALNSDGKTERIL
KQQCLADALQAGHRSQLMGVKHYATLRKMLCTAPSGREAAVTILTEALKN
DSSVEMHELLLATHIQSDSEPLIYELFNKIQKSMGSEALPLWRSVILYYR
TRQDSLGARRLDEIYGLACKAAWPEFGELRSDYLRYLWQERSVEEARKEY
AKLAILPPMSLALHRQMVQLESSAAACDQASLKYWRMCYDFMACYFGKTQ
PRVWVEYLAFERDHGEAKNISLLTQRALSTLEPQYVAAFEAERALAYVGA
SIASFLDH
BO18387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-PA | 602 | CG7246-PA | 1..602 | 1..602 | 3103 | 100 | Plus |
