Clone Sequence Records
BO18392.3prime Sequence
729 bp (604 high quality bases) assembled on 2006-10-13
> BO18392.3prime
ATGGTCTAGAAAGCTTGCGTTGTTCTTCTTCTTGGGCTTCTTCGGATTGC
GGGAGCGCGACTTGGCCTTGCAGAGCGGACAGATGGGCGCGTTCCGGTGG
ATCTGCTGGTGGCAGGACAGACAGGACTTCATGGGCGGCGGCTGCTGGCG
GAGATTCACATTGAAGTCGGAGCGGAACGAGGGATGGTGGCCGATGCCGA
TCGAAGGCGATTGCTGCAGTCGATTGCTGGGCGGCGGCGGTGGCGGTGGT
GCTGAGAAGTCACCCTTGCCCAGACGCACTGCAGCAGCAGCGGCGGCGGC
AGCAGCACTGCCTGCTCCCGGCGGTGCGGGTGGCATGAAGGCGTGTCCAG
GATTGCCGCCACCACCGCCTCCGCCGCCCACAGATCCTCCGCCACCGCCT
GCAGCGCCGCCACCACCAACGCCGCCCTGTCCGCCGCCAGAAGGCAGCGC
GGTGACCGTGGCCTCCGGCATCAGAGGATGCCGGGCATGCGGACGGGCCA
ACGACGAGTTCTGATTAACCGAGGCCGCCGCCGCAGCTGCAGCAGCTGCT
GCTGCCGCCGACTGGGCGGCCACCTTAAGGAAGTTGGTCTGGAAGCGATC
CTTTCGAAATGGGACTGCCCTCCTCCTCGTGCAGATCTCGCAGCGGGCTT
AGTCCGAGATAGTCGCGGCGCATGTGATCAATCTGGTACTTCGGGGCCAG
GTACTCCTCGTACACCCGGTTGGGCATGT
BO18392.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-PA | 1008 | CG13001-RA | 421..1005 | 603..19 | 2925 | 100 | Minus |
CG13001-PA | 1008 | CG13001-RA | 296..422 | 729..603 | 585 | 98.4 | Minus |
CG33106-PA | 12006 | mask-RA | 4283..4311 | 279..307 | 145 | 100 | Plus |
CG33106-PB | 12006 | mask-RB | 4283..4311 | 279..307 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-RA | 1786 | CG13001-RA | 585..1294 | 729..19 | 3500 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16941578..16942287 | 19..729 | 3475 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:13:10 has no hits.
BO18392.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:11 Download gff for
BO18392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-PA | 296..1008 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:46 Download gff for
BO18392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 576..1289 | 14..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:50 Download gff for
BO18392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 585..1298 | 14..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:50 Download gff for
BO18392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16941574..16942287 | 14..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:46 Download gff for
BO18392.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16835607..16836320 | 14..729 | 99 | | Plus |
BO18392.5prime Sequence
662 bp (644 high quality bases) assembled on 2006-10-13
> BO18392.5prime
GAAGTTATCAGTCGACATGGCCACCAGCGAGATCTCGAGCTCCAATGAGC
GGCACTACTACGCCAAACTGGAGGCCATCAAGGACATCAGGGACAAGACG
CTGTCGCTGGAGAAGCTCAAAGTGCGGATCATCAAGGAGGTGAAGCTGAG
CGACGACGAGGAGAAGTGCCTGGAGGAGTACCGCAAGGAGATGGAGCACC
TGCTCGAGGAGAAGATGTCGCACGTGGAAGAGCTGCGCCAGATCCACGCG
GACATCAACGACATGGAGAACATCATCAAGCAGACGAAGGAGAACCAGAC
CCGCTCCTTCGACATGGCCAACCGGGTGTACGAGGAGTACCTGGCCCTGA
AGTACCAGATTGATCACATGCGCCGCGACTATCTCGGACTAAGCCCGCTG
CGAGATCTGCACGAGGAGGAGGGCAGTCCCATTTCGAAGGATCGCTTCCA
GACCAACTTCCTTAAGGTGGCCGCCCAGTCGGCGGCAGCAGCAGCTGCTG
CAGCTGCGGCGGCGGCCTCGGTTAATCAGAACTCGTCGTTGGCCCGTCCG
CATGCCCGGCATCCTCTGATGCCGGAGGCCACGGTCACCGCGCTGCCTTC
TGGCGGCGGACAGGGCGGCGTTGGTGGTGGCGGCGCTGCAGGCGGTGGCG
GAGGATCTGTGG
BO18392.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-PA | 1008 | CG13001-RA | 1..646 | 17..662 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-RA | 1786 | CG13001-RA | 290..935 | 17..662 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16941937..16942582 | 662..17 | 3230 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3681..3778 | 651..552 | 125 | 61 | Minus |
G5 | 4856 | G5 G5_DM 4856bp | 530..655 | 232..106 | 110 | 55.1 | Minus |
BO18392.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:12 Download gff for
BO18392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-PA | 1..646 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:06 Download gff for
BO18392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 275..926 | 12..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:10 Download gff for
BO18392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 284..935 | 12..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:10 Download gff for
BO18392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16941937..16942588 | 12..662 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:06 Download gff for
BO18392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16835970..16836621 | 12..662 | 99 | | Minus |
BO18392.complete Sequence
1039 bp assembled on 2006-10-11
GenBank Submission: FJ634402
> BO18392.complete
GAAGTTATCAGTCGACATGGCCACCAGCGAGATCTCGAGCTCCAATGAGC
GGCACTACTACGCCAAACTGGAGGCCATCAAGGACATCAGGGACAAGACG
CTGTCGCTGGAGAAGCTCAAAGTGCGGATCATCAAGGAGGTGAAGCTGAG
CGACGACGAGGAGAAGTGCCTGGAGGAGTACCGCAAGGAGATGGAGCACC
TGCTCGAGGAGAAGATGTCGCACGTGGAAGAGCTGCGCCAGATCCACGCG
GACATCAACGACATGGAGAACATCATCAAGCAGACGAAGGAGAACCAGAC
CCGCTCCTTCGACATGGCCAACCGGGTGTACGAGGAGTACCTGGCCCTGA
AGTACCAGATTGATCACATGCGCCGCGACTATCTCGGACTAAGCCCGCTG
CGAGATCTGCACGAGGAGGAGGGCAGTCCCATTTCGAAGGATCGCTTCCA
GACCAACTTCCTTAAGGTGGCCGCCCAGTCGGCGGCAGCAGCAGCTGCTG
CAGCTGCGGCGGCGGCCTCGGTTAATCAGAACTCGTCGTTGGCCCGTCCG
CATGCCCGGCATCCTCTGATGCCGGAGGCCACGGTCACCGCGCTGCCTTC
TGGCGGCGGACAGGGCGGCGTTGGTGGTGGCGGCGCTGCAGGCGGTGGCG
GAGGATCTGTGGGCGGCGGAGGCGGTGGTGGCGGCAATCCTGGACACGCC
TTCATGCCACCCGCACCGCCGGGAGCAGGCAGTGCTGCTGCCGCCGCCGC
TGCTGCTGCAGTGCGTCTGGGCAAGGGTGACTTCTCAGCACCACCGCCAC
CGCCGCCGCCCAGCAATCGACTGCAGCAATCGCCTTCGATCGGCATCGGC
CACCATCCCTCGTTCCGCTCCGACTTCAATGTGAATCTCCGCCAGCAGCC
GCCGCCCATGAAGTCCTGTCTGTCCTGCCACCAGCAGATCCACCGGAACG
CGCCCATCTGTCCGCTCTGCAAGGCCAAGTCGCGCTCCCGCAATCCGAAG
AAGCCCAAGAAGAAGAACAACGCAAGCTTTCTAGACCAT
BO18392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-RA | 1008 | CG13001-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-RA | 1786 | CG13001-RA | 290..1294 | 17..1021 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16941578..16942582 | 1021..17 | 5025 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 530..655 | 232..106 | 110 | 55.1 | Minus |
BO18392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:46 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 1..1008 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:44 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 275..1289 | 12..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:11 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 281..1285 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:47 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 275..1289 | 12..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:53 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13001-RA | 290..1294 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:53 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16941576..16942582 | 17..1023 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:11 Download gff for
BO18392.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16835609..16836615 | 17..1023 | 99 | | Minus |
BO18392.pep Sequence
Translation from 16 to 1039
> BO18392.pep
MATSEISSSNERHYYAKLEAIKDIRDKTLSLEKLKVRIIKEVKLSDDEEK
CLEEYRKEMEHLLEEKMSHVEELRQIHADINDMENIIKQTKENQTRSFDM
ANRVYEEYLALKYQIDHMRRDYLGLSPLRDLHEEEGSPISKDRFQTNFLK
VAAQSAAAAAAAAAAAASVNQNSSLARPHARHPLMPEATVTALPSGGGQG
GVGGGGAAGGGGGSVGGGGGGGGNPGHAFMPPAPPGAGSAAAAAAAAAVR
LGKGDFSAPPPPPPPSNRLQQSPSIGIGHHPSFRSDFNVNLRQQPPPMKS
CLSCHQQIHRNAPICPLCKAKSRSRNPKKPKKKNNASFLDH
BO18392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13001-PA | 335 | CG13001-PA | 1..335 | 1..335 | 1750 | 100 | Plus |