Clone BO18392 Report

Search the DGRC for BO18392

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG13001-RA
Protein status:BO18392.pep: validated full length
Sequenced Size:1039

Clone Sequence Records

BO18392.3prime Sequence

729 bp (604 high quality bases) assembled on 2006-10-13

> BO18392.3prime
ATGGTCTAGAAAGCTTGCGTTGTTCTTCTTCTTGGGCTTCTTCGGATTGC
GGGAGCGCGACTTGGCCTTGCAGAGCGGACAGATGGGCGCGTTCCGGTGG
ATCTGCTGGTGGCAGGACAGACAGGACTTCATGGGCGGCGGCTGCTGGCG
GAGATTCACATTGAAGTCGGAGCGGAACGAGGGATGGTGGCCGATGCCGA
TCGAAGGCGATTGCTGCAGTCGATTGCTGGGCGGCGGCGGTGGCGGTGGT
GCTGAGAAGTCACCCTTGCCCAGACGCACTGCAGCAGCAGCGGCGGCGGC
AGCAGCACTGCCTGCTCCCGGCGGTGCGGGTGGCATGAAGGCGTGTCCAG
GATTGCCGCCACCACCGCCTCCGCCGCCCACAGATCCTCCGCCACCGCCT
GCAGCGCCGCCACCACCAACGCCGCCCTGTCCGCCGCCAGAAGGCAGCGC
GGTGACCGTGGCCTCCGGCATCAGAGGATGCCGGGCATGCGGACGGGCCA
ACGACGAGTTCTGATTAACCGAGGCCGCCGCCGCAGCTGCAGCAGCTGCT
GCTGCCGCCGACTGGGCGGCCACCTTAAGGAAGTTGGTCTGGAAGCGATC
CTTTCGAAATGGGACTGCCCTCCTCCTCGTGCAGATCTCGCAGCGGGCTT
AGTCCGAGATAGTCGCGGCGCATGTGATCAATCTGGTACTTCGGGGCCAG
GTACTCCTCGTACACCCGGTTGGGCATGT

BO18392.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-PA 1008 CG13001-RA 421..1005 603..19 2925 100 Minus
CG13001-PA 1008 CG13001-RA 296..422 729..603 585 98.4 Minus
CG33106-PA 12006 mask-RA 4283..4311 279..307 145 100 Plus
CG33106-PB 12006 mask-RB 4283..4311 279..307 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1786 CG13001-RA 585..1294 729..19 3500 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16941578..16942287 19..729 3475 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 16:13:10 has no hits.

BO18392.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:11 Download gff for BO18392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-PA 296..1008 15..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:46 Download gff for BO18392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 576..1289 14..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:50 Download gff for BO18392.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 585..1298 14..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:50 Download gff for BO18392.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16941574..16942287 14..729 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:46 Download gff for BO18392.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16835607..16836320 14..729 99   Plus

BO18392.5prime Sequence

662 bp (644 high quality bases) assembled on 2006-10-13

> BO18392.5prime
GAAGTTATCAGTCGACATGGCCACCAGCGAGATCTCGAGCTCCAATGAGC
GGCACTACTACGCCAAACTGGAGGCCATCAAGGACATCAGGGACAAGACG
CTGTCGCTGGAGAAGCTCAAAGTGCGGATCATCAAGGAGGTGAAGCTGAG
CGACGACGAGGAGAAGTGCCTGGAGGAGTACCGCAAGGAGATGGAGCACC
TGCTCGAGGAGAAGATGTCGCACGTGGAAGAGCTGCGCCAGATCCACGCG
GACATCAACGACATGGAGAACATCATCAAGCAGACGAAGGAGAACCAGAC
CCGCTCCTTCGACATGGCCAACCGGGTGTACGAGGAGTACCTGGCCCTGA
AGTACCAGATTGATCACATGCGCCGCGACTATCTCGGACTAAGCCCGCTG
CGAGATCTGCACGAGGAGGAGGGCAGTCCCATTTCGAAGGATCGCTTCCA
GACCAACTTCCTTAAGGTGGCCGCCCAGTCGGCGGCAGCAGCAGCTGCTG
CAGCTGCGGCGGCGGCCTCGGTTAATCAGAACTCGTCGTTGGCCCGTCCG
CATGCCCGGCATCCTCTGATGCCGGAGGCCACGGTCACCGCGCTGCCTTC
TGGCGGCGGACAGGGCGGCGTTGGTGGTGGCGGCGCTGCAGGCGGTGGCG
GAGGATCTGTGG

BO18392.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-PA 1008 CG13001-RA 1..646 17..662 3230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1786 CG13001-RA 290..935 17..662 3230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16941937..16942582 662..17 3230 100 Minus
Blast to na_te.dros performed 2015-02-12 11:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3681..3778 651..552 125 61 Minus
G5 4856 G5 G5_DM 4856bp 530..655 232..106 110 55.1 Minus

BO18392.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:12 Download gff for BO18392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-PA 1..646 17..662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:06 Download gff for BO18392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 275..926 12..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:10 Download gff for BO18392.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 284..935 12..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:10 Download gff for BO18392.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16941937..16942588 12..662 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:06 Download gff for BO18392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16835970..16836621 12..662 99   Minus

BO18392.complete Sequence

1039 bp assembled on 2006-10-11

GenBank Submission: FJ634402

> BO18392.complete
GAAGTTATCAGTCGACATGGCCACCAGCGAGATCTCGAGCTCCAATGAGC
GGCACTACTACGCCAAACTGGAGGCCATCAAGGACATCAGGGACAAGACG
CTGTCGCTGGAGAAGCTCAAAGTGCGGATCATCAAGGAGGTGAAGCTGAG
CGACGACGAGGAGAAGTGCCTGGAGGAGTACCGCAAGGAGATGGAGCACC
TGCTCGAGGAGAAGATGTCGCACGTGGAAGAGCTGCGCCAGATCCACGCG
GACATCAACGACATGGAGAACATCATCAAGCAGACGAAGGAGAACCAGAC
CCGCTCCTTCGACATGGCCAACCGGGTGTACGAGGAGTACCTGGCCCTGA
AGTACCAGATTGATCACATGCGCCGCGACTATCTCGGACTAAGCCCGCTG
CGAGATCTGCACGAGGAGGAGGGCAGTCCCATTTCGAAGGATCGCTTCCA
GACCAACTTCCTTAAGGTGGCCGCCCAGTCGGCGGCAGCAGCAGCTGCTG
CAGCTGCGGCGGCGGCCTCGGTTAATCAGAACTCGTCGTTGGCCCGTCCG
CATGCCCGGCATCCTCTGATGCCGGAGGCCACGGTCACCGCGCTGCCTTC
TGGCGGCGGACAGGGCGGCGTTGGTGGTGGCGGCGCTGCAGGCGGTGGCG
GAGGATCTGTGGGCGGCGGAGGCGGTGGTGGCGGCAATCCTGGACACGCC
TTCATGCCACCCGCACCGCCGGGAGCAGGCAGTGCTGCTGCCGCCGCCGC
TGCTGCTGCAGTGCGTCTGGGCAAGGGTGACTTCTCAGCACCACCGCCAC
CGCCGCCGCCCAGCAATCGACTGCAGCAATCGCCTTCGATCGGCATCGGC
CACCATCCCTCGTTCCGCTCCGACTTCAATGTGAATCTCCGCCAGCAGCC
GCCGCCCATGAAGTCCTGTCTGTCCTGCCACCAGCAGATCCACCGGAACG
CGCCCATCTGTCCGCTCTGCAAGGCCAAGTCGCGCTCCCGCAATCCGAAG
AAGCCCAAGAAGAAGAACAACGCAAGCTTTCTAGACCAT

BO18392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1008 CG13001-PA 1..1005 17..1021 5025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1786 CG13001-RA 290..1294 17..1021 5025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16941578..16942582 1021..17 5025 100 Minus
Blast to na_te.dros performed 2014-11-27 08:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 530..655 232..106 110 55.1 Minus

BO18392.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:46 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 1..1008 17..1025 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:44 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 275..1289 12..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:11 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 281..1285 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:47 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 275..1289 12..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:53 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 290..1294 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:53 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
X 16941576..16942582 17..1023 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:11 Download gff for BO18392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16835609..16836615 17..1023 99   Minus

BO18392.pep Sequence

Translation from 16 to 1039

> BO18392.pep
MATSEISSSNERHYYAKLEAIKDIRDKTLSLEKLKVRIIKEVKLSDDEEK
CLEEYRKEMEHLLEEKMSHVEELRQIHADINDMENIIKQTKENQTRSFDM
ANRVYEEYLALKYQIDHMRRDYLGLSPLRDLHEEEGSPISKDRFQTNFLK
VAAQSAAAAAAAAAAAASVNQNSSLARPHARHPLMPEATVTALPSGGGQG
GVGGGGAAGGGGGSVGGGGGGGGNPGHAFMPPAPPGAGSAAAAAAAAAVR
LGKGDFSAPPPPPPPSNRLQQSPSIGIGHHPSFRSDFNVNLRQQPPPMKS
CLSCHQQIHRNAPICPLCKAKSRSRNPKKPKKKNNASFLDH

BO18392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-PA 335 CG13001-PA 1..335 1..335 1750 100 Plus