Clone Sequence Records
BO18393.5prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18393.5prime
GAAGTTATCAGTCGACATGCAGCACAAGTCGAGACCAGGAAGACTCTTAG
TCACACGGAAGGAGCATCAGAAAATAGCAGTTGAAAAGTTTAGTTTAAGT
GTAAGAGCAACAACAACAACAATAACAAGAACAAGAACCACATCGACAAC
GACAGGCAGCAGAACTTGGCTTAAATGCGCTCATGTGCAAAAATGCCATT
GTTTTGGATTTGGTCGTAAACAAAGCGGTGAAGTGAAGGCAAAAAATTTC
CTTTTTCCTTTCCACACCCCCCAAGAAGCAAAGAAAAACTTGGAAAGGTT
GGCACATTTTCCACCTCTCCCGGTCGAAGTTGGGGGCGAAAAAAAGAAAA
CGGAAGGCACTGGCGCAAGCTTTCTAGACC
BO18393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31246-PA | 351 | CG31246-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-06 10:24:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17836945..17837292 | 17..364 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:24:53 has no hits.
BO18393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:13 Download gff for
BO18393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31246-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:15 Download gff for
BO18393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 17..364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:15 Download gff for
BO18393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 17..364 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:25 Download gff for
BO18393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 17..364 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:25 Download gff for
BO18393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 17..364 | 100 | | Plus |
BO18393.3prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO18393.3prime
ATGGTCTAGAAAGCTTGCGCCAGTGCCTTCCGTTTTCTTTTTTTCGCCCC
CAACTTCGACCGGGAGAGGTGGAAAATGTGCCAACCTTTCCAAGTTTTTC
TTTGCTTCTTGGGGGGTGTGGAAAGGAAAAAGGAAATTTTTTGCCTTCAC
TTCACCGCTTTGTTTACGACCAAATCCAAAACAATGGCATTTTTGCACAT
GAGCGCATTTAAGCCAAGTTCTGCTGCCTGTCGTTGTCGATGTGGTTCTT
GTTCTTGTTATTGTTGTTGTTGTTGCTCTTACACTTAAACTAAACTTTTC
AACTGCTATTTTCTGATGCTCCTTCCGTGTGACTAAGAGTCTTCCTGGTC
TCGACTTGTGCTGCATGTCGACTGATAACT
BO18393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31246-PA | 351 | CG31246-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:14:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17836945..17837292 | 366..19 | 1740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:14:46 has no hits.
BO18393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:12 Download gff for
BO18393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31246-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:09 Download gff for
BO18393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 19..366 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:09 Download gff for
BO18393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 19..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:59 Download gff for
BO18393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 19..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:59 Download gff for
BO18393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 19..366 | 100 | | Minus |
BO18393.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ634403
> BO18393.complete
GAAGTTATCAGTCGACATGCAGCACAAGTCGAGACCAGGAAGACTCTTAG
TCACACGGAAGGAGCATCAGAAAATAGCAGTTGAAAAGTTTAGTTTAAGT
GTAAGAGCAACAACAACAACAATAACAAGAACAAGAACCACATCGACAAC
GACAGGCAGCAGAACTTGGCTTAAATGCGCTCATGTGCAAAAATGCCATT
GTTTTGGATTTGGTCGTAAACAAAGCGGTGAAGTGAAGGCAAAAAATTTC
CTTTTTCCTTTCCACACCCCCCAAGAAGCAAAGAAAAACTTGGAAAGGTT
GGCACATTTTCCACCTCTCCCGGTCGAAGTTGGGGGCGAAAAAAAGAAAA
CGGAAGGCACTGGCGCAAGCTTTCTAGACCAT
BO18393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:14:33 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 16:14:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17836945..17837292 | 17..364 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:14:32 has no hits.
BO18393.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:27 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31246-RA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:02 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31246-RA | 1143..1490 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:27 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31246-RA | 1143..1490 | 17..364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:10 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:10 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17836945..17837292 | 17..366 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:14 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 17..366 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:14 Download gff for
BO18393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13662667..13663014 | 17..366 | 99 | | Plus |
BO18393.pep Sequence
Translation from 16 to 382
> BO18393.pep
MQHKSRPGRLLVTRKEHQKIAVEKFSLSVRATTTTITRTRTTSTTTGSRT
WLKCAHVQKCHCFGFGRKQSGEVKAKNFLFPFHTPQEAKKNLERLAHFPP
LPVEVGGEKKKTEGTGASFLDH
Sequence BO18393.pep has no blast hits.