Clone Sequence Records
BO18395.3prime Sequence
828 bp (749 high quality bases) assembled on 2006-10-13
> BO18395.3prime
ATGGTCTAGAAAGCTTGCATTTATTTTTTGCTTGGGTGATATATTACCCT
TTTTACTCTTTAAGATAGCCCTTAACAGTTTAATTGCACAAAGGACAACA
ATACTAAGGATCGCCCAAACGGCCAGGAGAAAAGTTCCCAAAACATCCAA
GCTGTGGTAAGTTATAAAATCCAGATTTCTGCCCGCTACCCGCATATGAG
GTGCTCCCTTGTGACGCAGGACGTAGTGAGTCCACCAGATCGCCGTATCC
AAAGGATTCATTGGCTGATCCCGATACCTGTCCGCTGTTCTTTTTGCCTT
GACACCAAAACTCTTCTCTGTCAGCAACTGATGAATGGTGTCCTTAAATT
CATCGCTTGTCATATCCCTATAGTTTAAAACTAAACCTATGCCCTGCGCT
TTGATGTGTTCCATATTTCTGAACTGATCGTAGAAGAACGGCAATCCCAG
CATCGGTACACCACGATGGATACATTCGACTGTGCTCTGTAAGCCTCCAT
GAGTAATAAACAGCTTTACGTTTGGATGAGCAAGGATGTCCTGCTGCGGA
AACCACGGGCTAATTAGAACATTTGAGGGTACATCTGACAACTCATCAGC
ATCGAATTTCCACAAGATGCGCTGTGGCAGGCTGGCAAATGTGTCAATCA
ATATTTTCCTGCGATCCTTAGACAAATTTCTACTTCTTACATTGGTGCCG
AGCGAAAAGTAAATTACTCCATGTTCACCAGCCCCTTGGATAAAGTCCTC
CAGGTCCTGGGGGTAAGCTTTAGGTTGTTGATCGACATGCATACCACCGA
CTTCAATAATATTGGGAACATACGGACG
BO18395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6653-PA | 1584 | Ugt86De-RA | 772..1581 | 828..19 | 4000 | 99.7 | Minus |
| CG17200-PA | 1464 | Ugt86Dg-RA | 640..782 | 828..686 | 265 | 87.4 | Minus |
| CG17200-PA | 1464 | Ugt86Dg-RA | 1229..1280 | 239..188 | 260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-RA | 1739 | CG6653-RA | 790..1599 | 828..19 | 4020 | 99.8 | Minus |
| Ugt86Dg-RB | 1584 | CG17200-RB | 760..1460 | 828..128 | 1150 | 78.3 | Minus |
| CG31002-RA | 1663 | CG31002-RA | 801..1499 | 828..130 | 420 | 72 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11166317..11167126 | 19..828 | 4020 | 99.8 | Plus |
| 3R | 32079331 | 3R | 11164547..11165247 | 128..828 | 1150 | 77.6 | Plus |
| 3R | 32079331 | 3R | 31393746..31394444 | 130..828 | 405 | 70.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:27:21 has no hits.
BO18395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:15 Download gff for
BO18395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6653-PA | 772..1584 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:52:12 Download gff for
BO18395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 790..1605 | 11..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:13 Download gff for
BO18395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 790..1605 | 11..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:13 Download gff for
BO18395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11166311..11167126 | 11..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:52:12 Download gff for
BO18395.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6992033..6992848 | 11..828 | 99 | | Plus |
BO18395.5prime Sequence
777 bp (735 high quality bases) assembled on 2006-10-13
> BO18395.5prime
GAAGTTATCAGTCGACATGCCTATGAGTATGTTGGTTCTGAGATTGATAG
TTCTGGTGGTGGCCCTGCTGCCTGTTCTCTTGGAAGGAGCGCGTATCCTC
GGCGTGTTTCCCATACCAAGCCACTCGCATTACTATCACGCCCTACCTTA
TCTAAAGAAATTGGCATCTTTGGGCCATGAGATAACTTCTGTAAGCCCAT
TTCCATTGAAAGAACCTGTGGCTAATATACATGATATTCCAGTTCCGGAA
TTATTTGACAATATAGAGGAAATTGTTGGAAATCTAACAAACCGGAAGGG
CACATGGAATGAATTTGAATACATCAACCAGTATACCCTTGGTCTTGTCG
AAAAAGTGCTTGAAAATGATGGAGTGCGTCGAGAGATTCTGCAACCAGAA
AGTCTTCAGTTTGATCTGATCATTGTCGATCTTTGGCGGCTTGATGCTCT
ATACGGCTTGGCGGCCTATTTTGATGCCCCCATCATTGGAATTGCATCTT
ATGGAACCGACTGGAAGATTGATGAACTAGTGGGCAATGTATCACCTTTA
GCATACCTGCAGTCTCCGTCTTTCAACTGGTTTGATCTCGACACCTATGG
AGGACGTCTGGGTCACTTTGTGGATCAGTCCATGGCTTGGATTAACTGGC
ATTGGCGGCACGAGGAAAGGCATGAGGCGGTCTACAGAAAGTACTTCCCA
AAAATTGCCGATAAACGTTCGCTGTCCGAGATCACCAGAAATTTCGCCTT
GATTTTGGTTAACCAACACTTTACGAT
BO18395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6653-PA | 1584 | Ugt86De-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
| CG31002-PA | 1566 | CG31002-RA | 427..491 | 464..528 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-RA | 1739 | CG6653-RA | 19..779 | 17..777 | 3805 | 100 | Plus |
| CG31002-RA | 1663 | CG31002-RA | 468..585 | 455..572 | 305 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11167137..11167645 | 777..269 | 2545 | 100 | Minus |
| 3R | 32079331 | 3R | 11167711..11167963 | 269..17 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 31394660..31394777 | 572..455 | 305 | 83.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:39:50 has no hits.
BO18395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:15 Download gff for
BO18395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6653-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:32:03 Download gff for
BO18395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 10..779 | 8..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:10 Download gff for
BO18395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 10..779 | 8..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:10 Download gff for
BO18395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11167137..11167644 | 270..777 | 100 | <- | Minus |
| 3R | 11167711..11167972 | 8..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:32:03 Download gff for
BO18395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6992859..6993366 | 270..777 | 100 | <- | Minus |
| arm_3R | 6993433..6993694 | 8..269 | 98 | | Minus |
BO18395.complete Sequence
1615 bp assembled on 2007-03-23
GenBank Submission: FJ634404
> BO18395.complete
GAAGTTATCAGTCGACATGCCTATGAGTATGTTGGTTCTGAGATTGATAG
TTCTGGTGGTGGCCCTGCTGCCTGTTCTCTTGGAAGGAGCGCGTATCCTC
GGCGTGTTTCCCATACCAAGCCACTCGCATTACTATCACGCCCTACCTTA
TCTAAAGAAATTGGCATCTTTGGGCCATGAGATAACTTCTGTAAGCCCAT
TTCCATTGAAAGAACCTGTGGCTAATATACATGATATTCCAGTTCCGGAA
TTATTTGACAATATAGAGGAAATTGTTGGAAATCTAACAAACCGGAAGGG
CACATGGAATGAATTTGAATACATCAACCAGTATACCCTTGGTCTTGTCG
AAAAAGTGCTTGAAAATGATGGAGTGCGTCGAGAGATTCTGCAACCAGAA
AGTCTTCAGTTTGATCTGATCATTGTCGATCTTTGGCGGCTTGATGCTCT
ATACGGCTTGGCGGCCTATTTTGATGCCCCCATCATTGGAATTGCATCTT
ATGGAACCGACTGGAAGATTGATGAACTAGTGGGCAATGTATCACCTTTA
GCATACCTGCAGTCTCCGTCTTTCAACTGGTTTGATCTCGACACCTATGG
AGGACGTCTGGGTCACTTTGTGGATCAGTCCATGGCTTGGATTAACTGGC
ATTGGCGGCACGAGGAAAGGCATGAGGCGGTCTACAGAAAGTACTTCCCA
AAAATTGCCGATAAACGTTCGCTGTCCGAGATCACCAGAAATTTCGCCTT
GATTTTGGTTAACCAACACTTTACGATGGCACCACCACGTCCGTATGTTC
CCAATATTATTGAAGTCGGTGGTATGCATGTCGATCAACAACCTAAAGCT
TTACCCCAGGACCTGGAGGACTTTATCCAAGGGGCTGGTGAACATGGAGT
AATTTACTTTTCGCTCGGCACCAATGTAAGAAGTAGAAATTTGTCTAAGG
ATCGCAGGAAAATATTGATTGACACATTTGCCAGCCTGCCACAGCGCATC
TTGTGGAAATTCGATGCTGATGAGTTGTCAGATGTACCCTCAAATGTTCT
AATTAGCCCGTGGTTTCCGCAGCAGGACATCCTTGCTCATCCAAACGTAA
AGCTGTTTATTACTCATGGAGGCTTACAGAGCACAGTCGAATGTATCCAT
CGTGGTGTACCGATGCTGGGATTGCCGTTCTTCTACGATCAGTTCAGAAA
TATGGAACACATCAAAGCGCAGGGCATAGGTTTAGTTTTAAACTATAGGG
ATATGACAAGCGATGAATTTAAGGACACCATTCATCAGTTGCTGACAGAG
AAGAGTTTTGGTGTCAAGGCAAAAAGAACAGCGGACAGGTATCGGGATCA
GCCAATGAATCCTTTGGATACGGCGATCTGGTGGACTCACTACGTCCTGC
GTCACAAGGGAGCACCTCATATGCGGGTAGCGGGCAGAAATCTGGATTTT
ATAACTTACCACAGCTTGGATGTTTTGGGAACTTTTCTCCTGGCCGTTTG
GGCGATCCTTAGTATTGTTGTCCTTTGTGCAATTAAACTGTTAAGGGCTA
TCTTAAAGAGTAAAAAGGGTAATATATCACCCAAGCAAAAAATAAATGCA
AGCTTTCTAGACCAT
BO18395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-RA | 1584 | CG6653-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
| Ugt86Dg-RB | 1584 | CG17200-PB | 608..1460 | 636..1488 | 1295 | 76.8 | Plus |
| CG31002-RA | 1566 | CG31002-PA | 719..1449 | 756..1486 | 430 | 70.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-RA | 1739 | CG6653-RA | 19..1599 | 17..1597 | 7905 | 100 | Plus |
| Ugt86Dg-RB | 1584 | CG17200-RB | 608..1460 | 636..1488 | 1295 | 76.8 | Plus |
| CG31002-RA | 1663 | CG31002-RA | 769..1499 | 756..1486 | 430 | 70.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11166317..11167645 | 1597..269 | 6645 | 100 | Minus |
| 3R | 32079331 | 3R | 11164547..11165399 | 1488..636 | 1295 | 76.8 | Minus |
| 3R | 32079331 | 3R | 11167711..11167963 | 269..17 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 31393746..31394476 | 1486..756 | 430 | 70.6 | Minus |
| 3R | 32079331 | 3R | 31394660..31394777 | 572..455 | 305 | 83.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:45 has no hits.
BO18395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:04 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 1..1584 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:03 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 6..1601 | 8..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:55 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 19..1588 | 17..1586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:04 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 6..1601 | 8..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:35 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86De-RA | 19..1588 | 17..1586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:35 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11166328..11167644 | 270..1586 | 100 | <- | Minus |
| 3R | 11167711..11167963 | 17..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:55 Download gff for
BO18395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6992050..6993366 | 270..1586 | 100 | <- | Minus |
| arm_3R | 6993433..6993685 | 17..269 | 100 | | Minus |
BO18395.pep Sequence
Translation from 16 to 1615
> BO18395.pep
MPMSMLVLRLIVLVVALLPVLLEGARILGVFPIPSHSHYYHALPYLKKLA
SLGHEITSVSPFPLKEPVANIHDIPVPELFDNIEEIVGNLTNRKGTWNEF
EYINQYTLGLVEKVLENDGVRREILQPESLQFDLIIVDLWRLDALYGLAA
YFDAPIIGIASYGTDWKIDELVGNVSPLAYLQSPSFNWFDLDTYGGRLGH
FVDQSMAWINWHWRHEERHEAVYRKYFPKIADKRSLSEITRNFALILVNQ
HFTMAPPRPYVPNIIEVGGMHVDQQPKALPQDLEDFIQGAGEHGVIYFSL
GTNVRSRNLSKDRRKILIDTFASLPQRILWKFDADELSDVPSNVLISPWF
PQQDILAHPNVKLFITHGGLQSTVECIHRGVPMLGLPFFYDQFRNMEHIK
AQGIGLVLNYRDMTSDEFKDTIHQLLTEKSFGVKAKRTADRYRDQPMNPL
DTAIWWTHYVLRHKGAPHMRVAGRNLDFITYHSLDVLGTFLLAVWAILSI
VVLCAIKLLRAILKSKKGNISPKQKINASFLDH
BO18395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86De-PA | 527 | CG6653-PA | 1..527 | 1..527 | 2788 | 100 | Plus |
| Ugt86Dg-PB | 527 | CG17200-PB | 1..526 | 5..526 | 1857 | 64.3 | Plus |
| CG31002-PA | 521 | CG31002-PA | 4..520 | 11..526 | 1743 | 61.7 | Plus |
| Ugt35b-PA | 516 | CG6649-PA | 1..497 | 5..502 | 1431 | 53.2 | Plus |
| Ugt86Dd-PB | 517 | CG6633-PB | 4..501 | 5..509 | 1026 | 39.6 | Plus |
