Clone BO18396 Report

Search the DGRC for BO18396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:183
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG31855-RA
Protein status:BO18396.pep: validated full length
Sequenced Size:361

Clone Sequence Records

BO18396.3prime Sequence

359 bp (359 high quality bases) assembled on 2006-10-13

> BO18396.3prime
ATGGTCTAGAAAGCTTGCCCCCAGCTCGTTGGGGTCCAAGCGCGGGCGCT
TTTTGCTGTTGGTGCTGTTGCCGTTGGGCGTGGAGCTGTTGCCGTTGCCA
TTTCCCGAATCGCCGCCGTGCTCCCTCTTCCGCTGAAGCGTCTTTTTGTC
CCACTGCTGAGTGAGGTAGCGCAGCAGGACACATCGCTTGTCCATCACGA
TCAGCTGCTCTGAATGCTCATCCTCGGTGGGCAGGTAGACGGAGGCACGC
TTCTGCGACGTTCGAATTCCATGTTCGTTGCTCAAATGGGTAAAATTGCT
CGAATCGTGTATGGGCAGACCCTTGATAAAGTCTCGTACTGACATGTCGA
CTGATAACT

BO18396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PA 330 CG31855-RA 1..324 345..22 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..521 345..22 1620 100 Minus
CG31855-RA 1064 CG31855-RA 136..459 345..22 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369724 345..22 1620 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:52:09 has no hits.

BO18396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:16 Download gff for BO18396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-PA 1..324 22..345 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:17 Download gff for BO18396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..459 22..352 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:55 Download gff for BO18396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..459 22..352 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:55 Download gff for BO18396.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13369395..13369724 22..352 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:17 Download gff for BO18396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369395..13369724 22..352 99   Minus

BO18396.5prime Sequence

359 bp (359 high quality bases) assembled on 2006-10-13

> BO18396.5prime
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACGCAAGCT
TTCTAGACC

BO18396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PA 330 CG31855-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..524 17..343 1635 100 Plus
CG31855-RA 1064 CG31855-RA 136..462 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369727 17..343 1635 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:14:57 has no hits.

BO18396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:17 Download gff for BO18396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-PA 1..330 17..346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:00 Download gff for BO18396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 10..350 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:10 Download gff for BO18396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 130..468 10..350 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:10 Download gff for BO18396.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13369395..13369733 10..350 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:00 Download gff for BO18396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369395..13369733 10..350 98   Plus

BO18396.complete Sequence

361 bp assembled on 2006-10-11

GenBank Submission: FJ634405

> BO18396.complete
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACGCAAGCT
TTCTAGACCAT

BO18396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 330 CG31855-PB 1..327 17..343 1635 100 Plus
CG31855-RA 330 CG31855-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-RB 1126 CG31855-RB 198..524 17..343 1635 100 Plus
CG31855-RA 1064 CG31855-RA 136..462 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13369401..13369727 17..343 1635 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:06:21 has no hits.

BO18396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:38 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 1..330 17..346 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:55 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 203..541 10..350 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:05 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 136..462 17..345 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:38 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RB 203..541 10..350 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:36 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
CG31855-RA 136..462 17..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:36 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13369401..13369727 17..345 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:05 Download gff for BO18396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13369401..13369727 17..345 99   Plus

BO18396.pep Sequence

Translation from 16 to 361

> BO18396.pep
MSVRDFIKGLPIHDSSNFTHLSNEHGIRTSQKRASVYLPTEDEHSEQLIV
MDKRCVLLRYLTQQWDKKTLQRKREHGGDSGNGNGNSSTPNGNSTNSKKR
PRLDPNELNASFLDH

BO18396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31855-PB 109 CG31855-PB 1..109 1..109 580 100 Plus
CG31855-PA 109 CG31855-PA 1..109 1..109 580 100 Plus