Clone Sequence Records
BO18396.3prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO18396.3prime
ATGGTCTAGAAAGCTTGCCCCCAGCTCGTTGGGGTCCAAGCGCGGGCGCT
TTTTGCTGTTGGTGCTGTTGCCGTTGGGCGTGGAGCTGTTGCCGTTGCCA
TTTCCCGAATCGCCGCCGTGCTCCCTCTTCCGCTGAAGCGTCTTTTTGTC
CCACTGCTGAGTGAGGTAGCGCAGCAGGACACATCGCTTGTCCATCACGA
TCAGCTGCTCTGAATGCTCATCCTCGGTGGGCAGGTAGACGGAGGCACGC
TTCTGCGACGTTCGAATTCCATGTTCGTTGCTCAAATGGGTAAAATTGCT
CGAATCGTGTATGGGCAGACCCTTGATAAAGTCTCGTACTGACATGTCGA
CTGATAACT
BO18396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-PA | 330 | CG31855-RA | 1..324 | 345..22 | 1620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-RB | 1126 | CG31855-RB | 198..521 | 345..22 | 1620 | 100 | Minus |
CG31855-RA | 1064 | CG31855-RA | 136..459 | 345..22 | 1620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13369401..13369724 | 345..22 | 1620 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:52:09 has no hits.
BO18396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:16 Download gff for
BO18396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-PA | 1..324 | 22..345 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:17 Download gff for
BO18396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 130..459 | 22..352 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:55 Download gff for
BO18396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 130..459 | 22..352 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:55 Download gff for
BO18396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13369395..13369724 | 22..352 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:17 Download gff for
BO18396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13369395..13369724 | 22..352 | 99 | | Minus |
BO18396.5prime Sequence
359 bp (359 high quality bases) assembled on 2006-10-13
> BO18396.5prime
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACGCAAGCT
TTCTAGACC
BO18396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-PA | 330 | CG31855-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-RB | 1126 | CG31855-RB | 198..524 | 17..343 | 1635 | 100 | Plus |
CG31855-RA | 1064 | CG31855-RA | 136..462 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13369401..13369727 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:14:57 has no hits.
BO18396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:17 Download gff for
BO18396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-PA | 1..330 | 17..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:00 Download gff for
BO18396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 130..468 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:10 Download gff for
BO18396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 130..468 | 10..350 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:10 Download gff for
BO18396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13369395..13369733 | 10..350 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:00 Download gff for
BO18396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13369395..13369733 | 10..350 | 98 | | Plus |
BO18396.complete Sequence
361 bp assembled on 2006-10-11
GenBank Submission: FJ634405
> BO18396.complete
GAAGTTATCAGTCGACATGTCAGTACGAGACTTTATCAAGGGTCTGCCCA
TACACGATTCGAGCAATTTTACCCATTTGAGCAACGAACATGGAATTCGA
ACGTCGCAGAAGCGTGCCTCCGTCTACCTGCCCACCGAGGATGAGCATTC
AGAGCAGCTGATCGTGATGGACAAGCGATGTGTCCTGCTGCGCTACCTCA
CTCAGCAGTGGGACAAAAAGACGCTTCAGCGGAAGAGGGAGCACGGCGGC
GATTCGGGAAATGGCAACGGCAACAGCTCCACGCCCAACGGCAACAGCAC
CAACAGCAAAAAGCGCCCGCGCTTGGACCCCAACGAGCTGAACGCAAGCT
TTCTAGACCAT
BO18396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-RB | 330 | CG31855-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
CG31855-RA | 330 | CG31855-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-RB | 1126 | CG31855-RB | 198..524 | 17..343 | 1635 | 100 | Plus |
CG31855-RA | 1064 | CG31855-RA | 136..462 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13369401..13369727 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:06:21 has no hits.
BO18396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:38 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RB | 1..330 | 17..346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:55 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RB | 203..541 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:05 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 136..462 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:38 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RB | 203..541 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:36 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31855-RA | 136..462 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:36 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13369401..13369727 | 17..345 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:05 Download gff for
BO18396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13369401..13369727 | 17..345 | 99 | | Plus |
BO18396.pep Sequence
Translation from 16 to 361
> BO18396.pep
MSVRDFIKGLPIHDSSNFTHLSNEHGIRTSQKRASVYLPTEDEHSEQLIV
MDKRCVLLRYLTQQWDKKTLQRKREHGGDSGNGNGNSSTPNGNSTNSKKR
PRLDPNELNASFLDH
BO18396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31855-PB | 109 | CG31855-PB | 1..109 | 1..109 | 580 | 100 | Plus |
CG31855-PA | 109 | CG31855-PA | 1..109 | 1..109 | 580 | 100 | Plus |