Clone BO18403 Report

Search the DGRC for BO18403

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:3
Vector:pDNR-Dual
Associated Gene/Transcripthay-RA
Protein status:BO18403.pep: Imported from assembly
Sequenced Size:2428

Clone Sequence Records

BO18403.3prime Sequence

750 bp (705 high quality bases) assembled on 2006-10-13

> BO18403.3prime
ATGGTCTAGAAAGCTTGCTCCTCTGAATTTTTTGAAGAGCGGATGCACGC
TGCCAATGTTCTTTTTACGATGTTCGTAGTAGATGGCATCATCTCCGCCA
GACATGGAGCTCAGTCCGCCGACACGTCTGACGGCGCCGCCCGAGCCACT
GGGACGGTAGCCCGGCTCGCCCGGCAGCTTCTCATCCTCGCAGTCCAAAT
CGGAAGCGGATAGGACCAACTGCAGCAGTTGTCCCTGCTCCTCCTGTGTG
CCGTACATCAAATCCGAGTCCGTGTCCATGCCCTTGAGATGCGTGATAAC
CTTGTAGCTATAGCCCTGGTTGACCAAGAACCGCTGTCGCTTGCGGGAGT
AGCTCATCTCCATGGTATCCTGCGAGACGAGTGTATAGAAGAAGGCGTTG
TATTCCTCGGCAATGGCACCCTTCTTAGCACGCAGAATACGACCCAGACG
CTGGGCCTCCTGACGACGAGAGCCGCCATGCGAAGAGATCTGGATAAGCA
CATTAGCCTCGGGCAAATCGAAACTGGTGTCTGCCACTTTGGACACGAAG
ATTGTATTAACCTTGGAGTTAAACTTAAAGTTCTGGAGGATCTGGATACG
TTCGTTCTGCGAGGTGGGACCATAGATGAAAGGCTTGTTCATCTTGATCG
CATAGTGTTTTAGCGCAAACACATTATCTGAGAAGACGATTGTTTTGTCG
CCTCGTTGCTCGTGATATTTTAATAAGAAACTGGCAGCTGCGGAACTTGG

BO18403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8019-PA 2397 hay-RA 1664..2394 750..19 3620 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
hay-RB 2511 CG8019-RB 1730..2460 750..19 3635 99.9 Minus
hay-RA 2604 CG8019-RA 1823..2553 750..19 3635 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10633374..10633918 563..19 2725 100 Minus
3L 28110227 3L 10633131..10633320 750..560 905 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 01:21:40 has no hits.

BO18403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:18 Download gff for BO18403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8019-PA 1664..2397 18..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:43:57 Download gff for BO18403.3prime
Subject Subject Range Query Range Percent Splice Strand
hay-RA 1823..2553 19..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:15 Download gff for BO18403.3prime
Subject Subject Range Query Range Percent Splice Strand
hay-RA 1823..2553 19..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:15 Download gff for BO18403.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10633131..10633318 562..750 99 -> Minus
3L 10633376..10633918 19..561 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:43:57 Download gff for BO18403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10626231..10626418 562..750 99 -> Minus
arm_3L 10626476..10627018 19..561 100   Minus

BO18403.5prime Sequence

755 bp (739 high quality bases) assembled on 2006-10-13

> BO18403.5prime
GAAGTTATCAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCA
GCGGTGGTGACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTC
ACCCAACTGGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGG
AATTCCGGGTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCA
ATACGGATGAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGT
CCGGATCACGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTT
CCTGGAATCATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCG
CCATTTCGGAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTT
ACCGCATACAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGA
CATTGTGGAATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCA
TCCTTGAGTTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTG
GTCTTGAAGCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCT
GCAAAAGTTACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCA
GCGAGGGAGAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACT
CAATTCGGGACCAAACTGCCGCCAGGAGCCACGGACAAGCCAACACCCGA
TCCTG

BO18403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8019-PA 2397 hay-RA 1..739 17..755 3645 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
hay-RB 2511 CG8019-RB 67..805 17..755 3665 99.7 Plus
hay-RA 2604 CG8019-RA 160..898 17..755 3665 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10631519..10632206 68..755 3410 99.7 Plus
3L 28110227 3L 10631408..10631460 17..69 265 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:22:41 has no hits.

BO18403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:19 Download gff for BO18403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8019-PA 1..739 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:42 Download gff for BO18403.5prime
Subject Subject Range Query Range Percent Splice Strand
hay-RA 160..898 17..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:28 Download gff for BO18403.5prime
Subject Subject Range Query Range Percent Splice Strand
hay-RA 160..898 17..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:28 Download gff for BO18403.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10631408..10631459 17..68 100 -> Plus
3L 10631520..10632206 69..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:42 Download gff for BO18403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10624508..10624559 17..68 100 -> Plus
arm_3L 10624620..10625306 69..755 99   Plus

BO18403.complete Sequence

2428 bp assembled on 2010-05-05

GenBank Submission: KX796541

> BO18403.complete
GAAGTTATCAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCA
GCGGTGGTGACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTC
ACCCAACTGGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGG
AATTCCGGGTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCA
ATACGGATGAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGT
CCGGATCACGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTT
CCTGGAATCATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCG
CCATTTCGGAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTT
ACCGCATACAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGA
CATTGTGGAATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCA
TCCTTGAGTTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTG
GTCTTGAAGCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCT
GCAAAAGTTACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCA
GCGAGGGAGAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACT
CAATTCGGGACCAAACTGCCGCCAGGAGCCACGGACAAGCCGACACCAGA
TCCTGCAGCAGCCGCAGGAGCTGATGGAACCACAGCAGTGCCAGAAGATA
TCACAGACTTCTACGAGAAGATCGACAAAGAGGAGGAGGACGAGGATGAG
GCCAATCTGAAGACCGTGTCGTTTGAGGTGGCCCAGGAGAAGATCGAAGT
GATTCAGAAACGATGCATCGAGATAGAGCATCCTCTATTGGCGGAGTACG
ATTTCCGCAACGATACCAACAATCCAGACATTAATATTGACCTCAAACCC
GCTGCCGTTCTGCGTCCATATCAGGAGAAGAGTCTGCGCAAGATGTTTGG
CAATGGAAGAGCCCGCTCTGGTGTTATTGTGCTTCCTTGTGGTGCAGGAA
AATCCCTAGTGGGTGTCACAGCATGCTGCACCGTACGAAAGAGGGCACTA
GTTCTGTGCAACAGTGGTGTTTCTGTGGAGCAGTGGAAGCAGCAGTTTAA
GATGTGGTCCACAGCTGATGACAGCATGATTTGTAGATTCACCTCTGAAG
CAAAAGACAAACCCATGGGCTGTGGAATTCTTGTGACCACATACTCTATG
ATAACGCACACGCAGAAGAGATCATGGGAAGCAGAGCAGACCATGCGTTG
GCTGCAGGAGCAGGAATGGGGCATCATGGTGCTGGACGAGGTGCACACCA
TCCCAGCCAAAATGTTCCGTCGCGTGCTGACCATCGTTCAATCTCATTGC
AAGCTGGGATTGACGGCCACACTACTGCGTGAAGATGACAAGATTGCCGA
TCTCAACTTCCTCATTGGACCCAAACTGTACGAGGCCAACTGGTTAGAGC
TGCAAAAGAAGGGATATATTGCACGCGTGCAGTGCGCCGAGGTGTGGTGT
CCCATGTCACCGGAGTTCTATCGCGAGTACCTGACCACCAAGACCTCCAA
AAAGATGTTGCTCTATGTGATGAATCCCTCCAAGTTCCGCAGCTGCCAGT
TTCTTATTAAATATCACGAGCAACGAGGCGACAAAACAATCGTCTTCTCA
GATAATGTGTTTGCGCTAAAACACTATGCGATCAAGATGAACAAGCCTTT
CATCTATGGTCCCACCTCGCAGAACGAACGTATCCAGATCCTCCAGAACT
TTAAGTTTAACTCCAAGGTTAATACAATCTTCGTGTCCAAAGTGGCAGAC
ACCAGTTTCGATTTGCCCGAGGCTAATGTGCTTATCCAGATCTCTTCGCA
TGGCGGCTCTCGTCGTCAGGAGGCCCAGCGTCTGGGTCGTATTCTGCGTG
CTAAGAAGGGTGCCATTGCCGAGGAATACAACGCCTTCTTCTATACACTC
GTCTCGCAGGATACCATGGAGATGAGCTACTCCCGCAAGCGACAGCGGTT
CTTGGTCAACCAGGGCTATAGCTACAAGGTTATCACGCATCTCAAGGGCA
TGGACACGGACTCGGATTTGATGTACGGCACACAGGAGGAGCAGGGACAA
CTGCTGCAGTTGGTCCTATCCGCTTCCGATTTGGACTGCGAGGATGAGAA
GCTGCCGGGCGAGCCGGGCTACCGTCCCAGTGGCTCGGGCGGCGCCGTCA
GACGTGTCGGCGGACTGAGCTCCATGTCTGGCGGAGATGATGCCATCTAC
TACGAACATCGTAAAAAGAACATTGGCAGCGTGCATCCGCTCTTCAAAAA
ATTCAGAGGAGCAAGCTTTCTAGACCAT

BO18403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
hay-RB 2397 CG8019-PB 1..2394 17..2410 11970 100 Plus
hay-RA 2397 CG8019-PA 1..2394 17..2410 11970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
hay-RB 2511 CG8019-RB 67..2460 17..2410 11970 100 Plus
hay-RA 2604 CG8019-RA 160..2553 17..2410 11970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10631519..10633320 68..1869 9010 100 Plus
3L 28110227 3L 10633374..10633918 1866..2410 2725 100 Plus
3L 28110227 3L 10631408..10631460 17..69 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:31:24 has no hits.

BO18403.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:11 Download gff for BO18403.complete
Subject Subject Range Query Range Percent Splice Strand
hay-RB 67..2460 17..2412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:27 Download gff for BO18403.complete
Subject Subject Range Query Range Percent Splice Strand
hay-RA 160..2553 17..2412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:00 Download gff for BO18403.complete
Subject Subject Range Query Range Percent Splice Strand
hay-RA 160..2553 17..2412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:00 Download gff for BO18403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10631408..10631459 17..68 100 -> Plus
3L 10631520..10633318 69..1867 100 -> Plus
3L 10633376..10633918 1868..2412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:27 Download gff for BO18403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10624508..10624559 17..68 100 -> Plus
arm_3L 10624620..10626418 69..1867 100 -> Plus
arm_3L 10626476..10627018 1868..2412 99   Plus

BO18403.pep Sequence

Translation from 16 to 2428

> BO18403.pep
MGPPKKSRKDRSGGDKFGKKRRAEDEAFTQLVDDNDSLDATESEGIPGAA
SKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFS
PVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIVEYL
KRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKLLK
DPVIQKCRLIRSEGEDFIQGTLDGKAITQFGTKLPPGATDKPTPDPAAAA
GADGTTAVPEDITDFYEKIDKEEEDEDEANLKTVSFEVAQEKIEVIQKRC
IEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRAR
SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTA
DDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE
WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI
GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLY
VMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPT
SQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR
QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQG
YSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEP
GYRPSGSGGAVRRVGGLSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRGAS
FLDH

BO18403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
hay-PB 798 CG8019-PB 1..798 1..798 4186 100 Plus
hay-PA 798 CG8019-PA 1..798 1..798 4186 100 Plus