Clone Sequence Records
BO18404.3prime Sequence
877 bp (800 high quality bases) assembled on 2006-10-13
> BO18404.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTTTCATATACATGGTAGCAATTTTCT
CAAGAATCGTGTCTATAGACAACAATTCGTCGCTGAATTTCTGCATAGTG
GGGGCTGGCACAATCCACTTAAGAAATTCCTCCACATTTAGCCGGAGTCT
GGCCAATGGGGTCATCGTGGCGTCGTCATGGGATTGTCGCTGAGCCAGCT
TCAAGGATGCAATGATAACGTTATCGATTAGACGCTTCTCGTAGCCCAAC
TGGCGCAGCTTTTGAGCGGAGCTAATTTTCTTCAGTACCACTGCCATGTT
AAATCTTAAGACAGAGAGAATTTGCGCATCTTCAGACTGATTGCCACTGG
GTTTGTCCCCGTCAACTGGACACTTGGCGCAGTGCTCAACATGCGACTGC
AGCTCCACCTTGATCTTAAAGAAATCGTGGCAGCCTTCGCACATGTAGGG
CTTTTGCTGTTTGTGTATCTTCTTCATGTGGTTCTTTAGGTGCGCCAGCT
GAGAAAAGGCTACTTCGTCTTCGCACAGCTGGCAGCGAAAGGGTTTTTCC
CCCGTATGCTTTCGGATGTGCAGTTTTAGTACGCTTGAATGGGCAAAGGT
CTGGTGGCAGATCCTACACTGATAGGGGCGCTCTCCCGTGTGCATTCGCA
TATGGACATTGTACTGGCTTTTCTGGGTGAAATATGTGTTGCACACCTCG
CAGACGTGGGTCTTAACAGCGGTGTGCCTCTGCATGTGAGTGGCCAAATC
CTCGTCCGGCTCGATCATCTTATGGCATATCTCGCACTCAAATTGCGTCA
GCTTGTGGTGCTCCTGGTTTATGTGCGCTCGCAGGGGCAGCTCGTTGGCG
AATTGGTTCTCACAGATGCTGCACCGG
BO18404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-PB | 1569 | CG11247-RB | 708..1566 | 877..19 | 4270 | 99.8 | Minus |
| CG11247-PA | 1569 | CG11247-RA | 708..1566 | 877..19 | 4270 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RD | 2518 | CG11247-RD | 1084..1942 | 877..19 | 4280 | 99.9 | Minus |
| CG11247-RC | 2564 | CG11247-RC | 1130..1988 | 877..19 | 4280 | 99.9 | Minus |
| CG11247-RA | 2803 | CG11247-RA | 1369..2227 | 877..19 | 4280 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21724902..21725496 | 19..613 | 2975 | 100 | Plus |
| 3L | 28110227 | 3L | 21725555..21725819 | 613..877 | 1310 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:12:28 has no hits.
BO18404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:20 Download gff for
BO18404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-PA | 708..1569 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:00 Download gff for
BO18404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RA | 1369..2227 | 19..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:20 Download gff for
BO18404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RA | 1369..2227 | 19..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:20 Download gff for
BO18404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21724902..21725495 | 19..612 | 100 | <- | Plus |
| 3L | 21725555..21725819 | 613..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:00 Download gff for
BO18404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21718002..21718595 | 19..612 | 100 | <- | Plus |
| arm_3L | 21718655..21718919 | 613..877 | 99 | | Plus |
BO18404.5prime Sequence
864 bp (737 high quality bases) assembled on 2006-10-13
> BO18404.5prime
GAAGTTATCAGTCGACATGGTACGCAGCCGTCGTAGTGTGTCCAAGGAGG
ATGCCGTCTCTCTGCTCACAGACAGCGGCATATCGCTGTCTTCGCCGCCG
GCGGCGAGGGAATCCTCACCAGGCCCTACGCTTGCGATCAAAAGGAGGAA
GAGCAGCTTGGCAAGTCTGCGCGATGCTTGTGTGGACGAGGAGGAGGACG
ACGGCGGAGAGCAGGACTCAAAGGATGATGATTACGTGCAACCGCAGCTT
AAGAAGTCTGCCCGAAAGGGCGAACCGGTGAAACGCAAGCACCATGTCTG
CAGTCAATGCTCCAAAGAGTTCGGTGGCAAGACGGATCTGCAGCGCCACA
TGCTTATCCACTCGGACGAACGACCGCACAAGTGCAAGGATTGTGGCAAG
AGCTACCGCCAGGCGGTCAACCTGAAAAATCATATCACCACCGCCCACGA
GCATCGGAAACAGTTCGTTTGTTCCCAGTGCCCAAAATCATTCGCCCTCA
AGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTAT
CCTTGCGACCTCTGCGACAAAAAATTCGCCCGAGGAGGTCAACTGCAACA
GCACATGGTTTCTCACCACAAGACGAGTATCCAGCAGTTCAACTGCACTA
AGTGCTCGGCCAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAG
CGACACGAGCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAACCAATT
CGCCAACGAGCTGGCCCTGCGAGCGCACATAAACCAGGAGCACCACAAGC
TGACGCAATTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGACGAG
GATTTGGCCACTCA
BO18404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-PB | 1569 | CG11247-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG11247-PA | 1569 | CG11247-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RC | 2564 | CG11247-RC | 423..1270 | 17..864 | 4240 | 100 | Plus |
| CG11247-RA | 2803 | CG11247-RA | 662..1509 | 17..864 | 4240 | 100 | Plus |
| CG11247-RB | 2728 | CG11247-RB | 587..1434 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21726163..21726738 | 592..17 | 2880 | 100 | Minus |
| 3L | 28110227 | 3L | 21725679..21725950 | 864..593 | 1360 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:52:33 has no hits.
BO18404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:20 Download gff for
BO18404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:21 Download gff for
BO18404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1433 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:58 Download gff for
BO18404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1433 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:58 Download gff for
BO18404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21725680..21725950 | 593..863 | 100 | <- | Minus |
| 3L | 21726163..21726740 | 17..592 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:21 Download gff for
BO18404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21718780..21719050 | 593..863 | 100 | <- | Minus |
| arm_3L | 21719263..21719840 | 17..592 | 99 | -> | Minus |
BO18404.complete Sequence
1600 bp assembled on 2006-10-11
GenBank Submission: FJ634406
> BO18404.complete
GAAGTTATCAGTCGACATGGTACGCAGCCGTCGTAGTGTGTCCAAGGAGG
ATGCCGTCTCTCTGCTCACAGACAGCGGCATATCGCTGTCTTCGCCGCCG
GCGGCGAGGGAATCCTCACCAGGCCCTACGCTTGCGATCAAAAGGAGGAA
GAGCAGCTTGGCAAGTCTGCGCGATGCTTGTGTGGACGAGGAGGAGGACG
ACGGCGGAGAGCAGGACTCAAAGGATGATGATTACGTGCAACCGCAGCTT
AAGAAGTCTGCCCGAAAGGGCGAACCGGTGAAACGCAAGCACCATGTCTG
CAGTCAATGCTCCAAAGAGTTCGGTGGCAAGACGGATCTGCAGCGCCACA
TGCTTATCCACTCGGACGAACGACCGCACAAGTGCAAGGATTGTGGCAAG
AGCTACCGCCAGGCGGTCAACCTGAAAAATCATATCACCACCGCCCACGA
GCATCGGAAACAGTTCGTTTGTTCCCAGTGCCCAAAATCATTCGCCCTCA
AGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTAT
CCTTGCGACCTCTGCGACAAAAAATTCGCCCGAGGAGGTCAACTGCAACA
GCACATGGTTTCTCACCACAAGACGAGTATCCAGCAGTTCAACTGCACTA
AGTGCTCGGCCAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAG
CGACACGAGCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAACCAATT
CGCCAACGAGCTGGCCCTGCGAGCGCACATAAACCAGGAGCACCACAAGC
TGACGCAATTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGACGAG
GATTTGGCCACTCACATGCAGAGGCACACCGCTGTTAAGACCCACGTCTG
CGAGGTGTGCAACACATATTTCACCCAGAAAAGCCAGTACAATGTCCATA
TGCGAATGCACACGGGAGAGCGCCCCTATCAGTGTAGGATCTGCCACCAG
ACCTTTGCCCATTCAAGCGTACTAAAACTGCACATCCGAAAGCATACGGG
GGAAAAACCCTTTCGCTGCCAGCTGTGCGAAGACGAAGTAGCCTTTTCTC
AGCTGGCGCACCTAAAGAACCACATGAAGAAGATACACAAACAGCAAAAG
CCCTACATGTGCGAAGGCTGCCACGATTTCTTTAAGATCAAGGTGGAGCT
GCAGTCGCATGTTGAGCACTGCGCCAAGTGTCCAGTTGACGGGGACAAAC
CCAGTGGCAATCAGTCTGAAGATGCGCAAATTCTCTCTGTCTTAAGATTT
AACATGGCAGTGGTACTGAAGAAAATTAGCTCCGCTCAAAAGCTGCGCCA
GTTGGGCTACGAGAAGCGTCTAATCGATAACGTTATCATTGCATCCTTGA
AGCTGGCTCAGCGACAATCCCATGACGACGCCACGATGACCCCATTGGCC
AGACTCCGGCTAAATGTGGAGGAATTTCTTAAGTGGATTGTGCCAGCCCC
CACTATGCAGAAATTCAGCGACGAATTGTTGTCTATAGACACGATTCTTG
AGAAAATTGCTACCATGTATATGAAACAGAAGGCAAGCTTTCTAGACCAT
BO18404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RC | 1569 | CG11247-PC | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG11247-RA | 1569 | CG11247-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
| CG11247-RB | 1569 | CG11247-PB | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RC | 2564 | CG11247-RC | 423..1988 | 17..1582 | 7830 | 100 | Plus |
| CG11247-RA | 2803 | CG11247-RA | 662..2227 | 17..1582 | 7830 | 100 | Plus |
| CG11247-RB | 2728 | CG11247-RB | 587..2152 | 17..1582 | 7830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21724902..21725496 | 1582..988 | 2975 | 100 | Minus |
| 3L | 28110227 | 3L | 21726163..21726738 | 592..17 | 2880 | 100 | Minus |
| 3L | 28110227 | 3L | 21725555..21725950 | 988..593 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:35:25 has no hits.
BO18404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:48 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RC | 1..1569 | 17..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:46 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RC | 413..1985 | 9..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:36 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 587..2152 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:48 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RC | 413..1985 | 9..1582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:27 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 587..2152 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:27 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21724900..21725495 | 989..1584 | 99 | <- | Minus |
| 3L | 21725555..21725950 | 593..988 | 100 | <- | Minus |
| 3L | 21726163..21726738 | 17..592 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:36 Download gff for
BO18404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21718000..21718595 | 989..1584 | 99 | <- | Minus |
| arm_3L | 21718655..21719050 | 593..988 | 100 | <- | Minus |
| arm_3L | 21719263..21719838 | 17..592 | 100 | | Minus |
BO18404.pep Sequence
Translation from 16 to 1600
> BO18404.pep
MVRSRRSVSKEDAVSLLTDSGISLSSPPAARESSPGPTLAIKRRKSSLAS
LRDACVDEEEDDGGEQDSKDDDYVQPQLKKSARKGEPVKRKHHVCSQCSK
EFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQF
VCSQCPKSFALKERLRLHMRLHSGEKPYPCDLCDKKFARGGQLQQHMVSH
HKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQFANELA
LRAHINQEHHKLTQFECEICHKMIEPDEDLATHMQRHTAVKTHVCEVCNT
YFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFR
CQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHDFFKIKVELQSHVE
HCAKCPVDGDKPSGNQSEDAQILSVLRFNMAVVLKKISSAQKLRQLGYEK
RLIDNVIIASLKLAQRQSHDDATMTPLARLRLNVEEFLKWIVPAPTMQKF
SDELLSIDTILEKIATMYMKQKASFLDH
BO18404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-PC | 522 | CG11247-PC | 1..522 | 1..522 | 2794 | 100 | Plus |
| CG11247-PA | 522 | CG11247-PA | 1..522 | 1..522 | 2794 | 100 | Plus |
| CG11247-PB | 522 | CG11247-PB | 1..522 | 1..522 | 2794 | 100 | Plus |
| CG11247-PD | 326 | CG11247-PD | 1..326 | 197..522 | 1749 | 100 | Plus |
| CG5245-PA | 501 | CG5245-PA | 195..491 | 95..399 | 539 | 34.1 | Plus |
| CG11247-PD | 326 | CG11247-PD | 10..246 | 148..378 | 295 | 28.3 | Plus |
| CG11247-PD | 326 | CG11247-PD | 14..204 | 95..285 | 278 | 29 | Plus |
| CG11247-PD | 326 | CG11247-PD | 95..209 | 91..213 | 173 | 34.1 | Plus |
