Clone Sequence Records
BO18406.3prime Sequence
822 bp (637 high quality bases) assembled on 2006-10-13
> BO18406.3prime
ATGGTCTAGAAAGCTTGCGTCGCTGGTCTCCTCCTGGCTGCCACCGCGAT
GCAGGTGGTGGCCAATCAGCGTCTCGATGCGAAAGTCCTTGGCGCTGCTC
TGTTTGCTGGTCCGCAGAACCAGGGGCTCGCTATCGAAGCGTCTCCTTGG
ACTTGAATCGGACGCCTCGGCAGAAGCCTCAAAGATCAACGCTTCCGGCG
GCGCATCCAGGCGATTTGTACAGGCGCTGTCCACCGAGTCCGAGATATGT
GAGTCCTCCTGCTCATTGCCGCTCTCCACGTCGATCTTGTCCTCGCAGGA
GTCGTCATCTCCCTCGGCTTCCGCATCGGCCTCTGTGTCCGCATCGTCAT
TGTACACATTGAGATCCATGTAACCACCGCCGGCGGACAGCCGTTCTGCG
TAATCCCTGTGGCCGGGAATGCCCGCAGCACTGGCCACAGTCGCCACATC
GAAGGCGTATGGGCTTTTGTACTTGGAGCCACGGCTGCTCTCGGATCCCC
CGCCTACTCCTCCGCCGGAGCCACTGCTGTGCGGTAGTGCATCCAGGACA
TCCGCTCCTCGACCGCGATTCATGAAGGGCAGCCGGTCGAACTTGTCCCC
CGACTGACTTCCCTGGTAGAAGGATGCTTCGGCATTCGCAAAGAAGTTAA
ACTTCTTGTCCGCTCGCAGCGCTGAGTCAAAGACATCCGCCGGATTATGG
ACCACGTCGAACTCCCTGCTCCCATTGAAGTTGGGCACGTTGAAGTGCAC
TGGCACCAGGGGCACGGGCTTGCGGATTCAAAATGGAAACAGCGTGCCCA
AAAACCGCGGAAACGAGAAGCG
BO18406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3668-PA | 1371 | fd59A-RA | 589..1368 | 798..19 | 3675 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 2228 | CG3668-RA | 908..1711 | 822..19 | 3825 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22869386..22870189 | 822..19 | 3810 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:25:28 has no hits.
BO18406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:22 Download gff for
BO18406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3668-PA | 565..1371 | 18..822 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:30 Download gff for
BO18406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 908..1716 | 13..822 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:20 Download gff for
BO18406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 908..1716 | 13..822 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:20 Download gff for
BO18406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22869386..22870194 | 13..822 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:30 Download gff for
BO18406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18756909..18757717 | 13..822 | 98 | | Minus |
BO18406.5prime Sequence
780 bp (710 high quality bases) assembled on 2006-10-13
> BO18406.5prime
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAAAA
GTTTAACTTCTTTGCGAAGGCCGAAACCTC
BO18406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3668-PA | 1371 | fd59A-RA | 1..759 | 17..775 | 3620 | 99 | Plus |
| CG5069-PA | 1527 | croc-RA | 339..401 | 400..462 | 140 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 2228 | CG3668-RA | 341..1102 | 14..775 | 3705 | 99.1 | Plus |
| croc-RA | 2347 | CG5069-RA | 490..773 | 266..549 | 355 | 75.4 | Plus |
| slp1-RA | 1425 | CG16738-RA | 598..702 | 400..504 | 225 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22869174..22869580 | 369..775 | 1960 | 98.8 | Plus |
| 2R | 25286936 | 2R | 22868499..22868854 | 14..369 | 1750 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21475707..21475990 | 549..266 | 340 | 74.6 | Minus |
| 3R | 32079331 | 3R | 25083736..25083880 | 417..561 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:28 has no hits.
BO18406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:22 Download gff for
BO18406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3668-PA | 1..764 | 17..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:38 Download gff for
BO18406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 341..1107 | 14..780 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:23 Download gff for
BO18406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 341..1107 | 14..780 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:23 Download gff for
BO18406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22868499..22868854 | 14..369 | 99 | -> | Plus |
| 2R | 22869175..22869585 | 370..780 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:38 Download gff for
BO18406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18756022..18756377 | 14..369 | 99 | -> | Plus |
| arm_2R | 18756698..18757108 | 370..780 | 98 | | Plus |
BO18406.complete Sequence
1402 bp assembled on 2006-10-11
GenBank Submission: FJ634407
> BO18406.complete
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAGAA
GTTTAACTTCTTTGCGAATGCCGAAGCATCCTTCTACCAGGGAAGTCAGT
CGGGGGACAAGTTCGACCGGCTGCCCTTCATGAATCGCGGTCGAGGAGCG
GATGTCCTGGATGCACTACCGCACAGCAGTGGCTCCGGCGGAGGAGTAGG
CGGGGGATCCGAGAGCAGCCGTGGCTCCAAGTACAAAAGCCCATACGCCT
TCGATGTGGCGACTGTGGCCAGTGCTGCGGGCATTCCCGGCCACAGGGAT
TACGCAGAACGGCTGTCCGCCGGCGGTGGTTACATGGATCTCAATGTGTA
CAATGACGATGCGGACACAGAGGCCGATGCGGAAGCCGAGGGAGATGACG
ACTCCTGCGAGGACAAGATCGACGTGGAGAGCGGCAATGAGCAGGAGGAC
TCACATATCTCGGACTCGGTGGACAGCGCCTGTACAAATCGCCTGGATGC
GCCGCCGGAAGCGTTGATCTTTGAGGCTTCTGCCGAGGCGTCCGATTCAA
GTCCAAGGAGACGCTTCGATAGCGAGCCCCTGGTTCTGCGGACCAGCAAA
CAGAGCAGCGCCAAGGACTTTCGCATCGAGACGCTGATTGGCCACCACCT
GCATCGCGGTGGCAGCCAGGAGGAGACCAGCGACGCAAGCTTTCTAGACC
AT
BO18406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 1371 | CG3668-PA | 1..1368 | 17..1384 | 6720 | 99.4 | Plus |
| croc-RA | 1527 | CG5069-PA | 205..488 | 266..549 | 340 | 74.6 | Plus |
| fd96Ca-RB | 1119 | CG11921-PB | 185..329 | 417..561 | 215 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 2228 | CG3668-RA | 341..1711 | 14..1384 | 6735 | 99.4 | Plus |
| fd96Ca-RB | 2195 | CG11921-RB | 1053..1197 | 417..561 | 215 | 76.6 | Plus |
| fd96Ca-RA | 1702 | CG11921-RA | 560..704 | 417..561 | 215 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22869174..22870189 | 369..1384 | 4990 | 99.4 | Plus |
| 2R | 25286936 | 2R | 22868499..22868854 | 14..369 | 1750 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21475707..21475990 | 549..266 | 340 | 74.6 | Minus |
| 3R | 32079331 | 3R | 25083736..25083880 | 417..561 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:09:58 has no hits.
BO18406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:30 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 1..1371 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:20 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 1979..3354 | 14..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:26 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 344..1711 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:31 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 1979..3354 | 14..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:40 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 344..1711 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:40 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22868502..22868854 | 17..369 | 99 | -> | Plus |
| 2R | 22869175..22870189 | 370..1386 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:26 Download gff for
BO18406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18756025..18756377 | 17..369 | 99 | -> | Plus |
| arm_2R | 18756698..18757712 | 370..1386 | 99 | | Plus |
BO18406.pep Sequence
Translation from 16 to 1402
> BO18406.pep
MHTSTDPMHTLHDSVSLSPPLIKSSRGGSSIGNGIGCSASSRTAAADAMS
MGCDDSDIEPSSMGGSGAAGGNGDGSGSSGGPLVKPPYSYIALITMAILQ
SPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFIKVPREP
GNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKRAPTMQRFSFPAVFGTLS
PFWIRKPVPLVPVHFNVPNFNGSREFDVVHNPADVFDSALRADKKFNFFA
NAEASFYQGSQSGDKFDRLPFMNRGRGADVLDALPHSSGSGGGVGGGSES
SRGSKYKSPYAFDVATVASAAGIPGHRDYAERLSAGGGYMDLNVYNDDAD
TEADAEAEGDDDSCEDKIDVESGNEQEDSHISDSVDSACTNRLDAPPEAL
IFEASAEASDSSPRRRFDSEPLVLRTSKQSSAKDFRIETLIGHHLHRGGS
QEETSDASFLDH
BO18406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-PA | 456 | CG3668-PA | 1..456 | 1..456 | 2411 | 100 | Plus |
| croc-PA | 508 | CG5069-PA | 1..173 | 8..188 | 400 | 47.8 | Plus |
| fkh-PD | 510 | CG10002-PD | 136..307 | 17..182 | 361 | 44.8 | Plus |
| fkh-PB | 510 | CG10002-PB | 136..307 | 17..182 | 361 | 44.8 | Plus |
| fkh-PA | 510 | CG10002-PA | 136..307 | 17..182 | 361 | 44.8 | Plus |
