Clone BO18407 Report

Search the DGRC for BO18407

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:7
Vector:pDNR-Dual
Associated Gene/Transcriptcbt-RB
Protein status:BO18407.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO18407.3prime Sequence

805 bp (756 high quality bases) assembled on 2006-10-13

> BO18407.3prime
ATGGTCTAGAAAGCTTGCTCGCTGCACTTGAAGCAGGGTTCCGCCGAAGG
TGAAACTGCTGGCCTGCTGCTGTAGCCTCAGCAGATCTTGGGCGCTGTAG
ACTTGCAAGCTGGCGGAACTGATGGGCGAGGAACTAGCGCTGGAGCCCGC
CGGTGCTATCGCTCGCAAATGGAGCGAGGCATCGCAGAGGGAAGCCGCTA
CCGAAGCTGATGTGTTGTTGTTGGCCAGGGAGACATGTCGATTCACTCCG
TTCGCCTTGTCCTTGTTGTGCCGTTTGACGTGCTTCGACAGGTGATCGCT
TCTCATGAATTTCTTCTGGCAGACGCTGCACTGGAATTTCTTTTCACCGG
TGTGGGTCCGTTTGTGTCGGGACAACTCATCGGAACGGGAGAATCGTTTG
TCACAGTTCTCCCACTTGCAGATAAAGGGTCGCTCGCCGGTGTGAACCCT
CTGGTGGGCCTTCAGATGACTGCTTTTGAAGTAATTCTTGCCGCAATCGG
GAAAACTGCACTCGTAGATGCGACTTCTGGTGGCCGCCGCCTGGGCGGCC
GTAATTCTGGTTGTTAGTTTCTCCTCGGACATTGTTGGCGTTTTGGGTAC
GGGTGTGGGGCTCTGTTGGGCGGCCACTGTGCTGAGCAGGATAAGTTGGC
TGGCAGACGAAGCTACTGGGCTAACATATATCGGTGTTAGAATAGGTTTT
ATTTCCTCCTCCTTGATGCATTCCGCTGGAGCAGGTGGCGTTACAAGCTT
CGCAACTGGTGTCTCGGGTGTTTGTACTGGGGGTAGTGCCACTTCTGCAG
CACGC

BO18407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4427-PA 1287 cbt-RA 498..1284 805..19 3910 99.8 Minus
CG4427-PB 1044 cbt-RB 255..1041 805..19 3910 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 1031..1817 805..19 3920 99.9 Minus
cbt-RB 3243 CG4427-RB 1913..2699 805..19 3920 99.9 Minus
cbt-RA 2041 CG4427-RA 711..1497 805..19 3920 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 476990..477776 19..805 3920 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:35:20 has no hits.

BO18407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:23 Download gff for BO18407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4427-PB 255..1044 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:11 Download gff for BO18407.3prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 711..1497 19..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:54 Download gff for BO18407.3prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 711..1497 19..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:54 Download gff for BO18407.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 476990..477776 19..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:11 Download gff for BO18407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 476990..477776 19..805 99   Plus

BO18407.5prime Sequence

829 bp (708 high quality bases) assembled on 2006-10-13

> BO18407.5prime
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAA
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGA

BO18407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4427-PA 1287 cbt-RA 244..1056 17..829 3965 99.5 Plus
CG4427-PB 1044 cbt-RB 1..813 17..829 3965 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 777..1589 17..829 4005 99.5 Plus
cbt-RB 3243 CG4427-RB 1659..2471 17..829 4005 99.5 Plus
cbt-RA 2041 CG4427-RA 457..1269 17..829 4005 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 477218..478030 829..17 4005 99.5 Minus
3R 32079331 3R 24224197..24224360 801..638 190 74.4 Minus
Blast to na_te.dros performed on 2015-02-12 03:55:48 has no hits.

BO18407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:23 Download gff for BO18407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4427-PB 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:17 Download gff for BO18407.5prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1268 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:42 Download gff for BO18407.5prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1268 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:42 Download gff for BO18407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 477219..478030 17..828 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:17 Download gff for BO18407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 477219..478030 17..828 99   Minus

BO18407.complete Sequence

1075 bp assembled on 2006-10-11

GenBank Submission: FJ634408

> BO18407.complete
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCATTTGCGAGCGATAGCACCGGCGGGCTCCAGCGCTAGTTCCTCGC
CCATCAGTTCCGCCAGCTTGCAAGTCTACAGCGCCCAAGATCTGCTGAGG
CTACAGCAGCAGGCCAGCAGTTTCACCTTCGGCGGAACCCTGCTTCAAGT
GCAGCGAGCAAGCTTTCTAGACCAT

BO18407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 1044 CG4427-PC 1..1041 17..1057 5160 99.7 Plus
cbt-RB 1044 CG4427-PB 1..1041 17..1057 5160 99.7 Plus
cbt-RA 1287 CG4427-PA 244..1284 17..1057 5160 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 777..1817 17..1057 5160 99.7 Plus
cbt-RB 3243 CG4427-RB 1659..2699 17..1057 5160 99.7 Plus
cbt-RA 2041 CG4427-RA 457..1497 17..1057 5160 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 476990..478030 1057..17 5160 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 07:09:27 has no hits.

BO18407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:31 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1..1044 17..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:21 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1017..2057 17..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:09 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1497 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:32 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1017..2057 17..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:28 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1497 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:28 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 476987..478030 17..1059 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:09 Download gff for BO18407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 476987..478030 17..1059 99   Minus

BO18407.pep Sequence

Translation from 16 to 1075

> BO18407.pep
MSMTPPPDQKLDDDQKAERVSVIMRVNSSGAVSSSSQDENSSSSTSCCSS
SSNTNTSTSSVPPTVEDDYPEANVWRNLKFKMNRKRAAEVALPPVQTPET
PVAKLVTPPAPAECIKEEEIKPILTPIYVSPVASSASQLILLSTVAAQQS
PTPVPKTPTMSEEKLTTRITAAQAAATRSRIYECSFPDCGKNYFKSSHLK
AHQRVHTGERPFICKWENCDKRFSRSDELSRHKRTHTGEKKFQCSVCQKK
FMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLRA
IAPAGSSASSSPISSASLQVYSAQDLLRLQQQASSFTFGGTLLQVQRASF
LDH

BO18407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-PC 347 CG4427-PC 1..347 1..347 1780 100 Plus
cbt-PB 347 CG4427-PB 1..347 1..347 1780 100 Plus
cbt-PA 428 CG4427-PA 82..428 1..347 1780 100 Plus
Spps-PA 968 CG5669-PA 606..874 89..316 364 30.9 Plus
Sp1-PB 520 CG1343-PB 127..298 134..290 359 44.8 Plus