Clone Sequence Records
BO18407.3prime Sequence
805 bp (756 high quality bases) assembled on 2006-10-13
> BO18407.3prime
ATGGTCTAGAAAGCTTGCTCGCTGCACTTGAAGCAGGGTTCCGCCGAAGG
TGAAACTGCTGGCCTGCTGCTGTAGCCTCAGCAGATCTTGGGCGCTGTAG
ACTTGCAAGCTGGCGGAACTGATGGGCGAGGAACTAGCGCTGGAGCCCGC
CGGTGCTATCGCTCGCAAATGGAGCGAGGCATCGCAGAGGGAAGCCGCTA
CCGAAGCTGATGTGTTGTTGTTGGCCAGGGAGACATGTCGATTCACTCCG
TTCGCCTTGTCCTTGTTGTGCCGTTTGACGTGCTTCGACAGGTGATCGCT
TCTCATGAATTTCTTCTGGCAGACGCTGCACTGGAATTTCTTTTCACCGG
TGTGGGTCCGTTTGTGTCGGGACAACTCATCGGAACGGGAGAATCGTTTG
TCACAGTTCTCCCACTTGCAGATAAAGGGTCGCTCGCCGGTGTGAACCCT
CTGGTGGGCCTTCAGATGACTGCTTTTGAAGTAATTCTTGCCGCAATCGG
GAAAACTGCACTCGTAGATGCGACTTCTGGTGGCCGCCGCCTGGGCGGCC
GTAATTCTGGTTGTTAGTTTCTCCTCGGACATTGTTGGCGTTTTGGGTAC
GGGTGTGGGGCTCTGTTGGGCGGCCACTGTGCTGAGCAGGATAAGTTGGC
TGGCAGACGAAGCTACTGGGCTAACATATATCGGTGTTAGAATAGGTTTT
ATTTCCTCCTCCTTGATGCATTCCGCTGGAGCAGGTGGCGTTACAAGCTT
CGCAACTGGTGTCTCGGGTGTTTGTACTGGGGGTAGTGCCACTTCTGCAG
CACGC
BO18407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4427-PA | 1287 | cbt-RA | 498..1284 | 805..19 | 3910 | 99.8 | Minus |
CG4427-PB | 1044 | cbt-RB | 255..1041 | 805..19 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 1031..1817 | 805..19 | 3920 | 99.9 | Minus |
cbt-RB | 3243 | CG4427-RB | 1913..2699 | 805..19 | 3920 | 99.9 | Minus |
cbt-RA | 2041 | CG4427-RA | 711..1497 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 476990..477776 | 19..805 | 3920 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:35:20 has no hits.
BO18407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:23 Download gff for
BO18407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4427-PB | 255..1044 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:11 Download gff for
BO18407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 711..1497 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:54 Download gff for
BO18407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 711..1497 | 19..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:54 Download gff for
BO18407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 476990..477776 | 19..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:11 Download gff for
BO18407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 476990..477776 | 19..805 | 99 | | Plus |
BO18407.5prime Sequence
829 bp (708 high quality bases) assembled on 2006-10-13
> BO18407.5prime
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAA
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGA
BO18407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4427-PA | 1287 | cbt-RA | 244..1056 | 17..829 | 3965 | 99.5 | Plus |
CG4427-PB | 1044 | cbt-RB | 1..813 | 17..829 | 3965 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 777..1589 | 17..829 | 4005 | 99.5 | Plus |
cbt-RB | 3243 | CG4427-RB | 1659..2471 | 17..829 | 4005 | 99.5 | Plus |
cbt-RA | 2041 | CG4427-RA | 457..1269 | 17..829 | 4005 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 477218..478030 | 829..17 | 4005 | 99.5 | Minus |
3R | 32079331 | 3R | 24224197..24224360 | 801..638 | 190 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:48 has no hits.
BO18407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:23 Download gff for
BO18407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4427-PB | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:17 Download gff for
BO18407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1268 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:42 Download gff for
BO18407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1268 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:42 Download gff for
BO18407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 477219..478030 | 17..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:17 Download gff for
BO18407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 477219..478030 | 17..828 | 99 | | Minus |
BO18407.complete Sequence
1075 bp assembled on 2006-10-11
GenBank Submission: FJ634408
> BO18407.complete
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCATTTGCGAGCGATAGCACCGGCGGGCTCCAGCGCTAGTTCCTCGC
CCATCAGTTCCGCCAGCTTGCAAGTCTACAGCGCCCAAGATCTGCTGAGG
CTACAGCAGCAGGCCAGCAGTTTCACCTTCGGCGGAACCCTGCTTCAAGT
GCAGCGAGCAAGCTTTCTAGACCAT
BO18407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 1044 | CG4427-PC | 1..1041 | 17..1057 | 5160 | 99.7 | Plus |
cbt-RB | 1044 | CG4427-PB | 1..1041 | 17..1057 | 5160 | 99.7 | Plus |
cbt-RA | 1287 | CG4427-PA | 244..1284 | 17..1057 | 5160 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 777..1817 | 17..1057 | 5160 | 99.7 | Plus |
cbt-RB | 3243 | CG4427-RB | 1659..2699 | 17..1057 | 5160 | 99.7 | Plus |
cbt-RA | 2041 | CG4427-RA | 457..1497 | 17..1057 | 5160 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 476990..478030 | 1057..17 | 5160 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:09:27 has no hits.
BO18407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:31 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1..1044 | 17..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:21 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1017..2057 | 17..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:09 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1497 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:32 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1017..2057 | 17..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:28 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1497 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:28 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 476987..478030 | 17..1059 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:09 Download gff for
BO18407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 476987..478030 | 17..1059 | 99 | | Minus |
BO18407.pep Sequence
Translation from 16 to 1075
> BO18407.pep
MSMTPPPDQKLDDDQKAERVSVIMRVNSSGAVSSSSQDENSSSSTSCCSS
SSNTNTSTSSVPPTVEDDYPEANVWRNLKFKMNRKRAAEVALPPVQTPET
PVAKLVTPPAPAECIKEEEIKPILTPIYVSPVASSASQLILLSTVAAQQS
PTPVPKTPTMSEEKLTTRITAAQAAATRSRIYECSFPDCGKNYFKSSHLK
AHQRVHTGERPFICKWENCDKRFSRSDELSRHKRTHTGEKKFQCSVCQKK
FMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLRA
IAPAGSSASSSPISSASLQVYSAQDLLRLQQQASSFTFGGTLLQVQRASF
LDH
BO18407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-PC | 347 | CG4427-PC | 1..347 | 1..347 | 1780 | 100 | Plus |
cbt-PB | 347 | CG4427-PB | 1..347 | 1..347 | 1780 | 100 | Plus |
cbt-PA | 428 | CG4427-PA | 82..428 | 1..347 | 1780 | 100 | Plus |
Spps-PA | 968 | CG5669-PA | 606..874 | 89..316 | 364 | 30.9 | Plus |
Sp1-PB | 520 | CG1343-PB | 127..298 | 134..290 | 359 | 44.8 | Plus |