Clone BO18408 Report

Search the DGRC for BO18408

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptVsx1-RA
Protein status:BO18408.pep: Imported from assembly
Sequenced Size:2545

Clone Sequence Records

BO18408.complete Sequence

2545 bp assembled on 2008-11-10

GenBank Submission: KX795655

> BO18408.complete
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAAT
CCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGG
TGGATCCGGCGGTGGAGCCGGAGTGGGCGGATCGGGCGGTGGATCGGGCA
CGTCGGGCAGCAACTCCTCGACATCCGGAAACGGCGGTAACGGCGGCAGC
TCCGGCAGTCGCTCCTCGCCCGCTGGTCCGCATCACTCGGCCGCACTGGC
TGCCCATCAGCATGCAGCGGCTGCTGCGGCCGCCGCTCATCATCATGCCG
CTGCCGCTGCTGCCGCCCATCATGCTCACCACGCCCACGCCCAGGCGCAC
GCTCATGCCCACGCGCATGTCCACGCCCATGCCGCTCACGCCGCCCATGC
CGCCCACGCCCATGCCCATCATGCCGAGGCATTTCTGGGAGCAGCGGGCG
GAGCTGGAGGCAATCCCAATAGCCTGCTGGCCGCCCATGGTGGCGATGTT
CTTGTCGGTCCTGGCGGCACGGGTCCCGGCGGCAAGAAGAAGAACAAGCG
ACGCCACGGACGCACGATCTTCACCAGCAGCCAGCTGGAGGAGCTGGAGA
AGGCCTTCAAGGAGGCACACTACCCGGACGTGAGTGCGCGCGAGCTGCTG
TCCATGAAAACTGGCCTCGCCGAGGATCGCATTCAGGTGTGGTACCAGAA
TCGCCGGGCCAAGTGGCGCAAAACGGAGAAATGCTGGGGCCACAGCACCA
AAATGGCCGAATACGGATTGTATGGAGCGATGGTGAGGCATTCGCTGCCA
CTGCCGGAGACCATCATCAAGTCGGCCAAGGAGGACGAGTCGGTGGCGCC
GTGGCTGCTGGGCATGCACAAGAAGTCACTGGAGGCCGCCGAGCTGCTCA
AGAGCGACGAGAGTGACCGGGAGACGCCCACCTCGGACGATACGAACACC
AGCTACTCGGCGGGCAGCACCCATAATTCACCGATCTCCAGTTTCTCGAT
CTCGCGTCTCCTCTTTGACGCCCCACCGCCGGCGGCGGGTTCCGCTGGTG
GCAAGGGACACCACCACCATCATCACCACCACAAGGGCCACCATCATGCC
CACGTTCATGCCCAGGCGCAGGCGCACGCCCACATGCTGCTGCACCACCA
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCATCACCATCACTTGC
ACGCCGCAGAGAATTCCTTGCAGCAGCAGCAAGTTGCTGGAACGGGCTCG
GGTTCGGGATCCGGTTCCGGGTCGGGAACGGGTGCGGGCTCGACTGGGCC
ACCAGCACACCATCCGTACAACCAGCAGCAGCACCTGCACCACCTGCAGC
AACTGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGCAGCAGCAGCAG
CAGCATCACCACCACCAGCACCACCATTCGGTGCACCATATGCACCACCA
CAATGCTGCGGCCGGCTACGCCGAGGCAGCGGTGGCTGCTGCAGCGGCCG
CAGCAGCTGTTGCCGCAGCAGCAAACGCACGGAATGCAGCGGCGGCAGCA
GCGGTGGCCGCAGCCTCAGCGTCCGCCTCCGCAGCCGTGACCATTGCGGA
ATCGGAGGCGGAGGAGGAGCAGGACGACATCGAGGACATGGAACTGGACA
AGGACTGTGAGGTGGAGGAGGATGTGGAGCCCGTGGATAACGATACCAAT
ACCAACAACGAGCACGACAACGAGTGCGATGCGGATGCGGATGTTGAGGC
GGATGTGGATGCGGATGCGGATGCCGATCCCGAGATAGACATCTGCGACG
ACCACGACGAGGAGATGCGTCTGCAGGAGCAGCTCCTGCTGAAAGTGAAG
CAGGAGCAGGCGCATCTGGGGTCCAGAGCAAGCTTTCTAGACCAT

BO18408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 2514 CG4136-PB 1..2511 17..2527 12525 99.9 Plus
Vsx1-RA 2514 CG4136-PA 1..2511 17..2527 12525 99.9 Plus
Vsx2-RA 1923 CG33980-PA 673..1007 1184..1518 655 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 293..2803 17..2527 12525 99.9 Plus
Vsx1-RA 2983 CG4136-RA 293..2803 17..2527 12525 99.9 Plus
Vsx2-RA 2358 CG33980-RA 894..1228 1184..1518 655 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5610842..5612035 1334..2527 5970 100 Plus
X 23542271 X 5606082..5606863 558..1339 3895 99.9 Plus
X 23542271 X 5594547..5595090 17..560 2705 99.8 Plus
X 23542271 X 5531265..5531447 1516..1334 405 81.4 Minus
X 23542271 X 5546722..5546877 1339..1184 255 77.6 Minus
Blast to na_te.dros performed 2014-11-27 20:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2854 1695..2274 310 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7088 1709..2054 296 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2879 1708..2264 284 53 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7032 1793..2102 263 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2751..3011 1775..2043 238 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2538 1768..2003 227 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..7186 1786..2243 223 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6859 1763..1882 211 66.9 Plus
roo 9092 roo DM_ROO 9092bp 1055..1143 1790..1881 199 72.8 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 607..772 2229..2068 170 61.5 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 600..743 1927..1784 154 59.5 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 572..722 909..1059 125 56.5 Plus

BO18408.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:34 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG4136-RA 275..2789 17..2531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:37 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..2803 17..2529 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:26:44 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
CG4136-RA 275..2785 17..2529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:32 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..2803 17..2529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:32 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
X 5594547..5595090 17..560 99 -> Plus
X 5606085..5606860 561..1336 99 -> Plus
X 5610845..5612035 1337..2529 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:37 Download gff for BO18408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5488580..5489123 17..560 99 -> Plus
arm_X 5500118..5500893 561..1336 99 -> Plus
arm_X 5504878..5506068 1337..2529 99   Plus

BO18408.3prime Sequence

806 bp (743 high quality bases) assembled on 2006-10-13

> BO18408.3prime
ATGGTCTAGAAAGCTTGCTCTGGACCCCAGATGCGCCTGCTCCTGCTTCA
CTTTCAGCAGGAGCTGCTCCTGCAGACGCATCTCCTCGTCGTGGTCGTCG
CAGATGTCTATCTCGGGATCGGCATCCGCATCCGCATCCACATCCGCCTC
AACATCCGCATCCGCATCGCACTCGTTGTCGTGCTCGTTGTTGGTATTGG
TATCGTTATCCACGGGCTCCACATCCTCCTCCACCTCACAGTCCTTGTCC
AGTTCCATGTCCTCGATGTCGTCCTGCTCCTCCTCCGCCTCCGATTCCGC
AATGGTCACGGCTGCGGAGGCGGACGCTGAGGCTGCGGCCACCGCTGCTG
CCGCCGCTGCATTCCGTGCGTTTGCTGCTGCGGCAACAGCTGCTGCGGCC
GCTGCAGCAGCCACCGCTGCCTCGGCGTAGCCGGCCGCAGCATTGTGGTG
GTGCATATGGTGCACCGAATGGTGGTGCTGGTGGTGGTGATGCTGCTGCT
GCTGCTGCGCCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCAGTTGCTGC
AGGTGGTGCAGGTGCTGCTGCTGGTTGTACGGATGGTGTGCTGGTGGCCC
AGTCGAGCCCGCCCCCGTTCCCGACCCGGAACCGGATCCCGAACCCGAGC
CCGTTCCAGCAACTTGCTGCTGCTGCAAGGAATTCTCTGCGGCGTGCAAG
TGATGGTGATGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGGTG
GTGCAGCAGCATGTGGGCGTGCGCCTGCGCCTGGGCATGAACGTGGGCAT
GATGGT

BO18408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4136-PA 2514 CG4136-RA 1724..2511 806..19 3915 99.8 Minus
CG2302-PA 2352 nAcRalpha-7E-RA 1824..1855 508..477 160 100 Minus
CG12632-PB 1083 fd3F-RB 582..611 508..479 150 100 Minus
CG13953-PA 765 CG13953-RA 555..593 508..470 145 94.8 Minus
CG6896-PA 2226 MYPT-75D-RA 1710..1742 508..476 140 96.9 Minus
CG5403-PA 2721 retn-RA 1542..1574 508..476 140 96.9 Minus
CG9411-PA 2982 CG9411-RA 2071..2097 507..481 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 2016..2803 806..19 3925 99.9 Minus
Vsx1-RA 2983 CG4136-RA 2016..2803 806..19 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5611248..5612035 806..19 3925 99.9 Minus
Blast to na_te.dros performed 2015-02-12 11:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2854 783..272 288 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2590..2879 575..282 270 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7032 753..444 263 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..7088 777..492 257 58.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2751..3011 771..503 246 58.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2538 778..543 227 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..7186 760..303 223 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6859 783..664 211 66.9 Minus
roo 9092 roo DM_ROO 9092bp 1055..1143 756..665 199 72.8 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 607..772 317..478 170 61.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 600..743 619..762 154 59.5 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 1388..1426 404..442 114 76.9 Plus

BO18408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:24 Download gff for BO18408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4136-PA 1724..2514 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:44 Download gff for BO18408.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 2016..2807 15..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:45 Download gff for BO18408.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 2016..2807 15..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:45 Download gff for BO18408.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5611248..5612039 15..806 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:44 Download gff for BO18408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5505281..5506072 15..806 99   Minus

BO18408.5prime Sequence

793 bp (736 high quality bases) assembled on 2006-10-13

> BO18408.5prime
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAACGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAA
TCCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATG
GTGGATCCGGCGGTGGAACCGGAGTGGGCGGATCGGGCGGTGG

BO18408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4136-PA 2514 CG4136-RA 1..776 17..793 3745 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 293..1068 17..793 3800 99.4 Plus
Vsx1-RA 2983 CG4136-RA 293..1068 17..793 3800 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5594547..5595090 17..560 2690 99.6 Plus
X 23542271 X 5606082..5606316 558..793 1100 98.7 Plus
Blast to na_te.dros performed on 2015-02-11 18:51:05 has no hits.

BO18408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:24 Download gff for BO18408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4136-PA 1..776 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:58:28 Download gff for BO18408.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..1068 17..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:12 Download gff for BO18408.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..1068 17..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:12 Download gff for BO18408.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5594547..5595090 17..560 99 -> Plus
X 5606085..5606316 561..793 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:58:28 Download gff for BO18408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5488580..5489123 17..560 99 -> Plus
arm_X 5500118..5500349 561..793 98   Plus

BO18408.pep Sequence

Translation from 16 to 2545

> BO18408.pep
MQATKMRTPFAIQEILGLGAYQQQATASATPSEAPPSPAATPPPTANTPA
NGSLSAVQQQQQQQQQQQQQQQQLQQQQQQAIDSLRESRSISPDVSRLSA
AAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAA
AAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANASG
DEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGG
AGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHA
AAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHA
HHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRT
IFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKW
RKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGM
HKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLF
DAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQ
QQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSGTGAGSTGPPAHHP
YNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVHHMHHHNAAAG
YAEAAVAAAAAAAAVAAAANARNAAAAAAVAAASASASAAVTIAESEAEE
EQDDIEDMELDKDCEVEEDVEPVDNDTNTNNEHDNECDADADVEADVDAD
ADADPEIDICDDHDEEMRLQEQLLLKVKQEQAHLGSRASFLDH

BO18408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-PB 837 CG4136-PB 1..837 1..837 4412 100 Plus
Vsx1-PA 837 CG4136-PA 1..837 1..837 4412 100 Plus
Vsx2-PA 640 CG33980-PA 103..544 289..703 677 40.7 Plus
Vsx2-PB 645 CG33980-PB 103..549 289..703 661 40.3 Plus
Gsc-PC 415 CG2851-PC 34..342 134..455 316 31.8 Plus