Clone Sequence Records
BO18409.5prime Sequence
284 bp (284 high quality bases) assembled on 2006-10-13
> BO18409.5prime
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGGCAAGCTTTCTAGACC
BO18409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10679-PA | 255 | Nedd8-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 17..268 | 1260 | 100 | Plus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 17..268 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 166..33 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18951244..18951346 | 268..166 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:54:04 has no hits.
BO18409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:25 Download gff for
BO18409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10679-PA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:01 Download gff for
BO18409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 9..275 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:39 Download gff for
BO18409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 9..275 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:39 Download gff for
BO18409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951239..18951346 | 166..275 | 97 | <- | Minus |
| 2L | 18951407..18951537 | 35..165 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:01 Download gff for
BO18409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951239..18951346 | 166..275 | 97 | <- | Minus |
| arm_2L | 18951407..18951537 | 35..165 | 100 | <- | Minus |
BO18409.3prime Sequence
284 bp (284 high quality bases) assembled on 2006-10-13
> BO18409.3prime
ATGGTCTAGAAAGCTTGCCACACAAGGTGTTAGGATTGAATCACCTCCTC
GCAGAGCCAATACCAAGTGAAGAACGGATCCACCTTGCACTTTGTAGTCC
GCCGCGGTTTTATCGTCATTCATTTGCTTGCCGGAGAAAATAAGACGCTG
TTGCTGGGGCGGAATGCCTTCCTTTTCCTCCACGCGCTCCTTGATGCGAT
CTACCTTGTCCGTGGGCTCAATGTCGATCTCGATTTCCTTGCCGGTCAGG
GTCTTCACTTTGATCAACATGTCGACTGATAACT
BO18409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10679-PA | 255 | Nedd8-RA | 1..252 | 270..19 | 1260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 270..19 | 1260 | 100 | Minus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 270..19 | 1260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 121..254 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 18951244..18951346 | 19..121 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:20 has no hits.
BO18409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:25 Download gff for
BO18409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10679-PA | 1..255 | 15..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:14 Download gff for
BO18409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 12..278 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:25 Download gff for
BO18409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 12..278 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:25 Download gff for
BO18409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951239..18951346 | 12..121 | 97 | <- | Plus |
| 2L | 18951407..18951537 | 122..252 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:14 Download gff for
BO18409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951239..18951346 | 12..121 | 97 | <- | Plus |
| arm_2L | 18951407..18951537 | 122..252 | 100 | <- | Plus |
BO18409.complete Sequence
286 bp assembled on 2006-10-11
GenBank Submission: FJ634409
> BO18409.complete
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGGCAAGCTTTCTAGACCAT
BO18409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 255 | CG10679-PB | 1..252 | 17..268 | 1260 | 100 | Plus |
| Nedd8-RA | 255 | CG10679-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 17..268 | 1260 | 100 | Plus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 17..268 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 166..33 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18951244..18951346 | 268..166 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:18 has no hits.
BO18409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:09 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:23 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:47 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 128..374 | 22..270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:09 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:52 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 128..374 | 22..270 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:52 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951242..18951346 | 166..270 | 98 | <- | Minus |
| 2L | 18951407..18951539 | 33..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:47 Download gff for
BO18409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951242..18951346 | 166..270 | 98 | <- | Minus |
| arm_2L | 18951407..18951539 | 33..165 | 100 | | Minus |
BO18409.pep Sequence
Translation from 16 to 286
> BO18409.pep
MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQM
NDDKTAADYKVQGGSVLHLVLALRGGDSILTPCVASFLDH
BO18409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-PB | 84 | CG10679-PB | 1..84 | 1..84 | 424 | 100 | Plus |
| Nedd8-PA | 84 | CG10679-PA | 1..84 | 1..84 | 424 | 100 | Plus |
| RpL40-PB | 128 | CG2960-PB | 1..76 | 1..76 | 245 | 57.9 | Plus |
| RpL40-PA | 128 | CG2960-PA | 1..76 | 1..76 | 245 | 57.9 | Plus |
| RpS27A-PA | 156 | CG5271-PA | 1..76 | 1..76 | 245 | 57.9 | Plus |
