Clone Sequence Records
BO18413.3prime Sequence
557 bp (557 high quality bases) assembled on 2006-10-13
> BO18413.3prime
ATGGTCTAGAAAGCTTGCCCAGACCAGCTTTACGTTGTTGCGCTCCAGCT
GGCGACTGATGCACTGGTTGAAGAGGTGGGCCACCTCGCAGGGGTTCTTC
GAGGAGATGCCGCGGCTGCAGGCCTGCGCCATGCTGGAGCTAACGGCGAT
GGCCATCTTGTTGTCCTGGGTCACCAGGCTGGTCAGCTTCTCCACCTGGC
CAACGTTCAGCTTGTTGTCGGCGTCCATCAACTTGATCTTCTTGAGCACG
CACTCCACCAGGCACTTCTCCTTCTCACTTGGATTGGTCACCTTCCCCAG
CGGTCGCTGGTCCCTGGGCAGCTGCAGCTTCTGGATGCACTCCATCCTGG
CCGCGGTGACCAGCTCCTGCACCTGCGGCAAGTTGCGATCGATTACCGCC
CAGATGGGCTCCGTTCCGGTCTTGGGCAGCAGCTTGGCGAGATCGAAAGC
CTGGGTCTGGCCACGGACGCAGTGCGTCTGCAGCAGGACAGCGACCACTA
TCGTCATTAGCGGAATGGCTGCGACTGGAGTGGATGGCTTCATGTCGACT
GATAACT
BO18413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15457-PA | 528 | Obp19c-RA | 1..525 | 543..19 | 2625 | 100 | Minus |
CG15457-PB | 594 | Obp19c-RB | 1..315 | 543..229 | 1575 | 100 | Minus |
CG15457-PB | 594 | Obp19c-RB | 381..591 | 229..19 | 1055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19c-RC | 789 | CG15457-RC | 11..535 | 543..19 | 2625 | 100 | Minus |
Obp19c-RA | 978 | CG15457-RA | 200..724 | 543..19 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20418451..20418765 | 229..543 | 1575 | 100 | Plus |
X | 23542271 | X | 20418175..20418385 | 19..229 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:26:03 has no hits.
BO18413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:28 Download gff for
BO18413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15457-PA | 1..528 | 18..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:34 Download gff for
BO18413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 19..543 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:24 Download gff for
BO18413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 19..543 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:24 Download gff for
BO18413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20418175..20418384 | 19..228 | 100 | <- | Plus |
X | 20418451..20418765 | 229..543 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:34 Download gff for
BO18413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20289202..20289411 | 19..228 | 100 | <- | Plus |
arm_X | 20289478..20289792 | 229..543 | 100 | | Plus |
BO18413.5prime Sequence
557 bp (557 high quality bases) assembled on 2006-10-13
> BO18413.5prime
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGGCAAGCTTT
CTAGACC
BO18413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15457-PA | 528 | Obp19c-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
CG15457-PB | 594 | Obp19c-RB | 1..315 | 17..331 | 1575 | 100 | Plus |
CG15457-PB | 594 | Obp19c-RB | 381..591 | 331..541 | 1055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19c-RC | 789 | CG15457-RC | 11..535 | 17..541 | 2625 | 100 | Plus |
Obp19c-RA | 978 | CG15457-RA | 200..724 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20418451..20418765 | 331..17 | 1575 | 100 | Minus |
X | 23542271 | X | 20418175..20418385 | 541..331 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:50 has no hits.
BO18413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:28 Download gff for
BO18413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15457-PA | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:17 Download gff for
BO18413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:06 Download gff for
BO18413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:06 Download gff for
BO18413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20418175..20418384 | 332..541 | 100 | <- | Minus |
X | 20418451..20418765 | 17..331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:17 Download gff for
BO18413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20289202..20289411 | 332..541 | 100 | <- | Minus |
arm_X | 20289478..20289792 | 17..331 | 100 | | Minus |
BO18413.complete Sequence
559 bp assembled on 2006-10-11
GenBank Submission: FJ634410
> BO18413.complete
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGGCAAGCTTT
CTAGACCAT
BO18413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19c-RC | 528 | CG15457-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
Obp19c-RA | 528 | CG15457-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19c-RC | 789 | CG15457-RC | 11..535 | 17..541 | 2625 | 100 | Plus |
Obp19c-RA | 978 | CG15457-RA | 200..724 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20418451..20418765 | 331..17 | 1575 | 100 | Minus |
X | 23542271 | X | 20418175..20418385 | 541..331 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:49:35 has no hits.
BO18413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:32 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:23 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:51 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:33 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:01 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp19c-RA | 200..724 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:01 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20418173..20418384 | 332..543 | 99 | <- | Minus |
X | 20418451..20418765 | 17..331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:51 Download gff for
BO18413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20289200..20289411 | 332..543 | 99 | <- | Minus |
arm_X | 20289478..20289792 | 17..331 | 100 | | Minus |
BO18413.pep Sequence
Translation from 16 to 559
> BO18413.pep
MKPSTPVAAIPLMTIVVAVLLQTHCVRGQTQAFDLAKLLPKTGTEPIWAV
IDRNLPQVQELVTAARMECIQKLQLPRDQRPLGKVTNPSEKEKCLVECVL
KKIKLMDADNKLNVGQVEKLTSLVTQDNKMAIAVSSSMAQACSRGISSKN
PCEVAHLFNQCISRQLERNNVKLVWASFLDH
BO18413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp19c-PC | 175 | CG15457-PC | 1..175 | 1..175 | 892 | 100 | Plus |
Obp19c-PA | 175 | CG15457-PA | 1..175 | 1..175 | 892 | 100 | Plus |