Clone BO18413 Report

Search the DGRC for BO18413

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptObp19c-RA
Protein status:BO18413.pep: validated full length
Sequenced Size:559

Clone Sequence Records

BO18413.3prime Sequence

557 bp (557 high quality bases) assembled on 2006-10-13

> BO18413.3prime
ATGGTCTAGAAAGCTTGCCCAGACCAGCTTTACGTTGTTGCGCTCCAGCT
GGCGACTGATGCACTGGTTGAAGAGGTGGGCCACCTCGCAGGGGTTCTTC
GAGGAGATGCCGCGGCTGCAGGCCTGCGCCATGCTGGAGCTAACGGCGAT
GGCCATCTTGTTGTCCTGGGTCACCAGGCTGGTCAGCTTCTCCACCTGGC
CAACGTTCAGCTTGTTGTCGGCGTCCATCAACTTGATCTTCTTGAGCACG
CACTCCACCAGGCACTTCTCCTTCTCACTTGGATTGGTCACCTTCCCCAG
CGGTCGCTGGTCCCTGGGCAGCTGCAGCTTCTGGATGCACTCCATCCTGG
CCGCGGTGACCAGCTCCTGCACCTGCGGCAAGTTGCGATCGATTACCGCC
CAGATGGGCTCCGTTCCGGTCTTGGGCAGCAGCTTGGCGAGATCGAAAGC
CTGGGTCTGGCCACGGACGCAGTGCGTCTGCAGCAGGACAGCGACCACTA
TCGTCATTAGCGGAATGGCTGCGACTGGAGTGGATGGCTTCATGTCGACT
GATAACT

BO18413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15457-PA 528 Obp19c-RA 1..525 543..19 2625 100 Minus
CG15457-PB 594 Obp19c-RB 1..315 543..229 1575 100 Minus
CG15457-PB 594 Obp19c-RB 381..591 229..19 1055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..535 543..19 2625 100 Minus
Obp19c-RA 978 CG15457-RA 200..724 543..19 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 229..543 1575 100 Plus
X 23542271 X 20418175..20418385 19..229 1055 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:26:03 has no hits.

BO18413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:28 Download gff for BO18413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15457-PA 1..528 18..543 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:34 Download gff for BO18413.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 19..543 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:24 Download gff for BO18413.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 19..543 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:24 Download gff for BO18413.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20418175..20418384 19..228 100 <- Plus
X 20418451..20418765 229..543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:34 Download gff for BO18413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289202..20289411 19..228 100 <- Plus
arm_X 20289478..20289792 229..543 100   Plus

BO18413.5prime Sequence

557 bp (557 high quality bases) assembled on 2006-10-13

> BO18413.5prime
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGGCAAGCTTT
CTAGACC

BO18413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15457-PA 528 Obp19c-RA 1..525 17..541 2625 100 Plus
CG15457-PB 594 Obp19c-RB 1..315 17..331 1575 100 Plus
CG15457-PB 594 Obp19c-RB 381..591 331..541 1055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..535 17..541 2625 100 Plus
Obp19c-RA 978 CG15457-RA 200..724 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 331..17 1575 100 Minus
X 23542271 X 20418175..20418385 541..331 1055 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:35:50 has no hits.

BO18413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:28 Download gff for BO18413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15457-PA 1..528 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:17 Download gff for BO18413.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:06 Download gff for BO18413.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:06 Download gff for BO18413.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20418175..20418384 332..541 100 <- Minus
X 20418451..20418765 17..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:17 Download gff for BO18413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289202..20289411 332..541 100 <- Minus
arm_X 20289478..20289792 17..331 100   Minus

BO18413.complete Sequence

559 bp assembled on 2006-10-11

GenBank Submission: FJ634410

> BO18413.complete
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGGCAAGCTTT
CTAGACCAT

BO18413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 528 CG15457-PC 1..525 17..541 2625 100 Plus
Obp19c-RA 528 CG15457-PA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..535 17..541 2625 100 Plus
Obp19c-RA 978 CG15457-RA 200..724 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 331..17 1575 100 Minus
X 23542271 X 20418175..20418385 541..331 1055 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:49:35 has no hits.

BO18413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:32 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 1..528 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:23 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:51 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:33 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:01 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..724 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:01 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
X 20418173..20418384 332..543 99 <- Minus
X 20418451..20418765 17..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:51 Download gff for BO18413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289200..20289411 332..543 99 <- Minus
arm_X 20289478..20289792 17..331 100   Minus

BO18413.pep Sequence

Translation from 16 to 559

> BO18413.pep
MKPSTPVAAIPLMTIVVAVLLQTHCVRGQTQAFDLAKLLPKTGTEPIWAV
IDRNLPQVQELVTAARMECIQKLQLPRDQRPLGKVTNPSEKEKCLVECVL
KKIKLMDADNKLNVGQVEKLTSLVTQDNKMAIAVSSSMAQACSRGISSKN
PCEVAHLFNQCISRQLERNNVKLVWASFLDH

BO18413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-PC 175 CG15457-PC 1..175 1..175 892 100 Plus
Obp19c-PA 175 CG15457-PA 1..175 1..175 892 100 Plus