Clone Sequence Records
BO18415.3prime Sequence
803 bp (677 high quality bases) assembled on 2006-10-13
> BO18415.3prime
ATGGTCTAGAAAGCTTGCTCCGTAGACTCGCTTGAGAACAGTAAAAAATG
TATAGGTTGTGTTCAGTAGGTTTTGGAACAGTTCCAAAGTGATGGGGCGT
ATATTGCCCAGTAGTATTGCAGCTGGCCGCTGTGCCCTCATCATCATGAA
CAGGATGTTTTTGCGCAGTGGAACGTCGAAGGTGAACCACTCCGTTTCGT
AGGCTGCGGTGGCCACCGCCAGATTCTGTTCCCTTAACTCATTTGCATAC
CAATAGAGGGCCAGTATTTGGGCCAGAATCATGTTAATGTACATGCAAAC
AATTATCAGCTGACTGGTGCCGCTGACGATAATCAGCATAAAGAGCAGCG
CACAGAGCAGCGCCGAAAAGGCCATCAGTTCGAATAGGAACATCATGGTG
GTCAGCTCGTTTATGTGATCCATGTACTCGATAATGCTCTGCTGGTAACG
TATGCAGGCTATGATCTCCTCCCTCAGTTCACGGGGATCGCGATCTCCGT
ACGGATGCTTAAGCGCCACCTGGCGGAGGCGATGCTGCAAAGCCTTGCAC
CTCACAATGCCGAACATTATCAAGCCCACAATCAGACTGGTGTACGGAAT
GTACATGCAACAGCCCATCGGGGTGATGAGCATCTGAAAGATGTACCACA
TCTCATAGTACGGACTCTCGTACTCATTTAGACCAGGAATTTTGCTGCCA
AATGGCAGGACTCTTTCGCTGGAGGACAATGGGTACAGACCGAATCCCAT
GGATGTGAGCATGCCAAAGAACAGATTGCCCCTACCCATCAACTTTCCCA
CCT
BO18415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17584-PA | 1128 | Or49b-RA | 341..1125 | 803..19 | 3875 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 815..1599 | 803..19 | 3895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843674..12844060 | 712..326 | 1935 | 100 | Minus |
2R | 25286936 | 2R | 12844121..12844330 | 327..118 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 12844466..12844564 | 117..19 | 480 | 99 | Minus |
2R | 25286936 | 2R | 12843479..12843571 | 803..711 | 450 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:17:24 has no hits.
BO18415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:30 Download gff for
BO18415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17584-PA | 341..1128 | 16..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:23 Download gff for
BO18415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 815..1603 | 15..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:36 Download gff for
BO18415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 815..1603 | 15..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:36 Download gff for
BO18415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843479..12843571 | 711..803 | 98 | -> | Minus |
2R | 12843676..12844058 | 328..710 | 100 | -> | Minus |
2R | 12844121..12844330 | 118..327 | 100 | -> | Minus |
2R | 12844466..12844568 | 15..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:23 Download gff for
BO18415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8730984..8731076 | 711..803 | 98 | -> | Minus |
arm_2R | 8731181..8731563 | 328..710 | 100 | -> | Minus |
arm_2R | 8731626..8731835 | 118..327 | 100 | -> | Minus |
arm_2R | 8731971..8732073 | 15..117 | 97 | | Minus |
BO18415.5prime Sequence
818 bp (684 high quality bases) assembled on 2006-10-13
> BO18415.5prime
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAACTGACCACCCTGATGTTCCTATTCGAAACTGATGGCCTTTTCGGCG
CTGGCTCTGTGCGCTGCT
BO18415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17584-PA | 1128 | Or49b-RA | 1..765 | 17..781 | 3775 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 474..1274 | 16..818 | 3935 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843138..12843571 | 16..449 | 2170 | 100 | Plus |
2R | 25286936 | 2R | 12843674..12844042 | 448..818 | 1725 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:12:45 has no hits.
BO18415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:30 Download gff for
BO18415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17584-PA | 1..800 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:04 Download gff for
BO18415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1274 | 2..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:23 Download gff for
BO18415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1274 | 2..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:23 Download gff for
BO18415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843127..12843571 | 2..449 | 99 | -> | Plus |
2R | 12843676..12844042 | 450..818 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:04 Download gff for
BO18415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8730632..8731076 | 2..449 | 99 | -> | Plus |
arm_2R | 8731181..8731547 | 450..818 | 98 | | Plus |
BO18415.complete Sequence
1159 bp assembled on 2006-10-11
GenBank Submission: FJ634411
> BO18415.complete
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAGCTGACCACCATGATGTTCCTATTCGAACTGATGGCCTTTTCGGCGC
TGCTCTGTGCGCTGCTCTTTATGCTGATTATCGTCAGCGGCACCAGTCAG
CTGATAATTGTTTGCATGTACATTAACATGATTCTGGCCCAAATACTGGC
CCTCTATTGGTATGCAAATGAGTTAAGGGAACAGAATCTGGCGGTGGCCA
CCGCAGCCTACGAAACGGAGTGGTTCACCTTCGACGTTCCACTGCGCAAA
AACATCCTGTTCATGATGATGAGGGCACAGCGGCCAGCTGCAATACTACT
GGGCAATATACGCCCCATCACTTTGGAACTGTTCCAAAACCTACTGAACA
CAACCTATACATTTTTTACTGTTCTCAAGCGAGTCTACGGAGCAAGCTTT
CTAGACCAT
BO18415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1128 | CG17584-PA | 1..1125 | 17..1141 | 5610 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 474..1599 | 16..1141 | 5615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843138..12843571 | 16..449 | 2170 | 100 | Plus |
2R | 25286936 | 2R | 12843674..12844060 | 448..834 | 1935 | 100 | Plus |
2R | 25286936 | 2R | 12844121..12844330 | 833..1042 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 12844466..12844564 | 1043..1141 | 480 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:06 has no hits.
BO18415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:33 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 1..1128 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:25 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1603 | 2..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:02 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1599 | 23..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:34 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1603 | 2..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:24 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1599 | 23..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:24 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843145..12843571 | 23..449 | 100 | -> | Plus |
2R | 12843676..12844058 | 450..832 | 100 | -> | Plus |
2R | 12844121..12844330 | 833..1042 | 100 | -> | Plus |
2R | 12844466..12844564 | 1043..1143 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:02 Download gff for
BO18415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8730650..8731076 | 23..449 | 100 | -> | Plus |
arm_2R | 8731181..8731563 | 450..832 | 100 | -> | Plus |
arm_2R | 8731626..8731835 | 833..1042 | 100 | -> | Plus |
arm_2R | 8731971..8732069 | 1043..1143 | 97 | | Plus |
BO18415.pep Sequence
Translation from 16 to 1159
> BO18415.pep
MFEDIQLIYMNIKILRFWALLYDKNLRRYVCIGLASFHIFTQIVYMMSTN
EGLTGIIRNSYMLVLWINTVLRAYLLLADHDRYLALIQKLTEAYYDLLNL
NDSYISEILDQVNKVGKLMARGNLFFGMLTSMGFGLYPLSSSERVLPFGS
KIPGLNEYESPYYEMWYIFQMLITPMGCCMYIPYTSLIVGLIMFGIVRCK
ALQHRLRQVALKHPYGDRDPRELREEIIACIRYQQSIIEYMDHINELTTM
MFLFELMAFSALLCALLFMLIIVSGTSQLIIVCMYINMILAQILALYWYA
NELREQNLAVATAAYETEWFTFDVPLRKNILFMMMRAQRPAAILLGNIRP
ITLELFQNLLNTTYTFFTVLKRVYGASFLDH
BO18415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-PA | 375 | CG17584-PA | 1..375 | 1..375 | 1939 | 100 | Plus |
Or30a-PA | 377 | CG13106-PA | 18..377 | 12..375 | 764 | 42.2 | Plus |
Or43a-PA | 376 | CG1854-PA | 4..375 | 3..375 | 496 | 30.2 | Plus |
Or67c-PA | 404 | CG14156-PA | 241..401 | 213..374 | 209 | 26.5 | Plus |
Or46a-PA | 381 | CG33478-PA | 38..379 | 12..373 | 192 | 23 | Plus |