Clone BO18415 Report

Search the DGRC for BO18415

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptOr49b-RA
Protein status:BO18415.pep: validated full length
Sequenced Size:1159

Clone Sequence Records

BO18415.3prime Sequence

803 bp (677 high quality bases) assembled on 2006-10-13

> BO18415.3prime
ATGGTCTAGAAAGCTTGCTCCGTAGACTCGCTTGAGAACAGTAAAAAATG
TATAGGTTGTGTTCAGTAGGTTTTGGAACAGTTCCAAAGTGATGGGGCGT
ATATTGCCCAGTAGTATTGCAGCTGGCCGCTGTGCCCTCATCATCATGAA
CAGGATGTTTTTGCGCAGTGGAACGTCGAAGGTGAACCACTCCGTTTCGT
AGGCTGCGGTGGCCACCGCCAGATTCTGTTCCCTTAACTCATTTGCATAC
CAATAGAGGGCCAGTATTTGGGCCAGAATCATGTTAATGTACATGCAAAC
AATTATCAGCTGACTGGTGCCGCTGACGATAATCAGCATAAAGAGCAGCG
CACAGAGCAGCGCCGAAAAGGCCATCAGTTCGAATAGGAACATCATGGTG
GTCAGCTCGTTTATGTGATCCATGTACTCGATAATGCTCTGCTGGTAACG
TATGCAGGCTATGATCTCCTCCCTCAGTTCACGGGGATCGCGATCTCCGT
ACGGATGCTTAAGCGCCACCTGGCGGAGGCGATGCTGCAAAGCCTTGCAC
CTCACAATGCCGAACATTATCAAGCCCACAATCAGACTGGTGTACGGAAT
GTACATGCAACAGCCCATCGGGGTGATGAGCATCTGAAAGATGTACCACA
TCTCATAGTACGGACTCTCGTACTCATTTAGACCAGGAATTTTGCTGCCA
AATGGCAGGACTCTTTCGCTGGAGGACAATGGGTACAGACCGAATCCCAT
GGATGTGAGCATGCCAAAGAACAGATTGCCCCTACCCATCAACTTTCCCA
CCT

BO18415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17584-PA 1128 Or49b-RA 341..1125 803..19 3875 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-RA 1739 CG17584-RA 815..1599 803..19 3895 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12843674..12844060 712..326 1935 100 Minus
2R 25286936 2R 12844121..12844330 327..118 1050 100 Minus
2R 25286936 2R 12844466..12844564 117..19 480 99 Minus
2R 25286936 2R 12843479..12843571 803..711 450 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 16:17:24 has no hits.

BO18415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:30 Download gff for BO18415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17584-PA 341..1128 16..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:23 Download gff for BO18415.3prime
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 815..1603 15..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:36 Download gff for BO18415.3prime
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 815..1603 15..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:36 Download gff for BO18415.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12843479..12843571 711..803 98 -> Minus
2R 12843676..12844058 328..710 100 -> Minus
2R 12844121..12844330 118..327 100 -> Minus
2R 12844466..12844568 15..117 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:23 Download gff for BO18415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8730984..8731076 711..803 98 -> Minus
arm_2R 8731181..8731563 328..710 100 -> Minus
arm_2R 8731626..8731835 118..327 100 -> Minus
arm_2R 8731971..8732073 15..117 97   Minus

BO18415.5prime Sequence

818 bp (684 high quality bases) assembled on 2006-10-13

> BO18415.5prime
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAACTGACCACCCTGATGTTCCTATTCGAAACTGATGGCCTTTTCGGCG
CTGGCTCTGTGCGCTGCT

BO18415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17584-PA 1128 Or49b-RA 1..765 17..781 3775 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-RA 1739 CG17584-RA 474..1274 16..818 3935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12843138..12843571 16..449 2170 100 Plus
2R 25286936 2R 12843674..12844042 448..818 1725 98.9 Plus
Blast to na_te.dros performed on 2015-01-31 10:12:45 has no hits.

BO18415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:30 Download gff for BO18415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17584-PA 1..800 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:04 Download gff for BO18415.5prime
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 463..1274 2..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:23 Download gff for BO18415.5prime
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 463..1274 2..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:23 Download gff for BO18415.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12843127..12843571 2..449 99 -> Plus
2R 12843676..12844042 450..818 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:04 Download gff for BO18415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8730632..8731076 2..449 99 -> Plus
arm_2R 8731181..8731547 450..818 98   Plus

BO18415.complete Sequence

1159 bp assembled on 2006-10-11

GenBank Submission: FJ634411

> BO18415.complete
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAGCTGACCACCATGATGTTCCTATTCGAACTGATGGCCTTTTCGGCGC
TGCTCTGTGCGCTGCTCTTTATGCTGATTATCGTCAGCGGCACCAGTCAG
CTGATAATTGTTTGCATGTACATTAACATGATTCTGGCCCAAATACTGGC
CCTCTATTGGTATGCAAATGAGTTAAGGGAACAGAATCTGGCGGTGGCCA
CCGCAGCCTACGAAACGGAGTGGTTCACCTTCGACGTTCCACTGCGCAAA
AACATCCTGTTCATGATGATGAGGGCACAGCGGCCAGCTGCAATACTACT
GGGCAATATACGCCCCATCACTTTGGAACTGTTCCAAAACCTACTGAACA
CAACCTATACATTTTTTACTGTTCTCAAGCGAGTCTACGGAGCAAGCTTT
CTAGACCAT

BO18415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-RA 1128 CG17584-PA 1..1125 17..1141 5610 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-RA 1739 CG17584-RA 474..1599 16..1141 5615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12843138..12843571 16..449 2170 100 Plus
2R 25286936 2R 12843674..12844060 448..834 1935 100 Plus
2R 25286936 2R 12844121..12844330 833..1042 1050 100 Plus
2R 25286936 2R 12844466..12844564 1043..1141 480 99 Plus
Blast to na_te.dros performed on 2014-11-28 00:40:06 has no hits.

BO18415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:33 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 1..1128 17..1144 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:25 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 463..1603 2..1145 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:02 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 481..1599 23..1143 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:34 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 463..1603 2..1145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:24 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
Or49b-RA 481..1599 23..1143 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:24 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12843145..12843571 23..449 100 -> Plus
2R 12843676..12844058 450..832 100 -> Plus
2R 12844121..12844330 833..1042 100 -> Plus
2R 12844466..12844564 1043..1143 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:02 Download gff for BO18415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8730650..8731076 23..449 100 -> Plus
arm_2R 8731181..8731563 450..832 100 -> Plus
arm_2R 8731626..8731835 833..1042 100 -> Plus
arm_2R 8731971..8732069 1043..1143 97   Plus

BO18415.pep Sequence

Translation from 16 to 1159

> BO18415.pep
MFEDIQLIYMNIKILRFWALLYDKNLRRYVCIGLASFHIFTQIVYMMSTN
EGLTGIIRNSYMLVLWINTVLRAYLLLADHDRYLALIQKLTEAYYDLLNL
NDSYISEILDQVNKVGKLMARGNLFFGMLTSMGFGLYPLSSSERVLPFGS
KIPGLNEYESPYYEMWYIFQMLITPMGCCMYIPYTSLIVGLIMFGIVRCK
ALQHRLRQVALKHPYGDRDPRELREEIIACIRYQQSIIEYMDHINELTTM
MFLFELMAFSALLCALLFMLIIVSGTSQLIIVCMYINMILAQILALYWYA
NELREQNLAVATAAYETEWFTFDVPLRKNILFMMMRAQRPAAILLGNIRP
ITLELFQNLLNTTYTFFTVLKRVYGASFLDH

BO18415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Or49b-PA 375 CG17584-PA 1..375 1..375 1939 100 Plus
Or30a-PA 377 CG13106-PA 18..377 12..375 764 42.2 Plus
Or43a-PA 376 CG1854-PA 4..375 3..375 496 30.2 Plus
Or67c-PA 404 CG14156-PA 241..401 213..374 209 26.5 Plus
Or46a-PA 381 CG33478-PA 38..379 12..373 192 23 Plus