Clone BO18416 Report

Search the DGRC for BO18416

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptGstD10-RA
Protein status:BO18416.pep: validated full length
Sequenced Size:664

Clone Sequence Records

BO18416.3prime Sequence

662 bp (662 high quality bases) assembled on 2006-10-13

> BO18416.3prime
ATGGTCTAGAAAGCTTGCGTTATCGAAGTATTTGCGGAACTCCTGGCAAC
CAGCCCAGTTTTCCTCCCAACCGGGAGTCAGTTTCTTGGCATTCTCGTAC
CAACGTGCCACATTGGCATACCGCTTGAAATCGAAGCCAGCCACATCGAA
AGTGGAAACGGTGGCCAGAAAGGCAATATCCGCCAAGCTATAATCCCCTC
CAGCGCTGTAGGTCTGCCCCTCCAGGAATGTGTTTAGGAATTCGAAGGCC
ACTTCGATCTTCTTGTAGTTCTCCTCATTGGCGGGCTTCTTTAGGAAAAT
CTGCGGATAATAGTACTCGGAGAAGCTCTTATACAGCGTACCCATGTCGA
AGTACAGGCGCTGATTGATCAACGCCTGCTTTTGCACATCCTTGGGGAAG
AGCTTGTCGTCCTTGCCGTACTTCTCCACCAGATAAACCATAATCGCCCG
CGACTCCCACAAAGCAAATCCATGGTCGTGCAGCGTGGGGATCGTGTGCT
GCGGATTGATTTTCAGGTATTCCGGCGTGAATTGCTCCCTAGCTCGGGTG
TTGATAATGGTCTTCTTATCGAACTCCACACCCAGTGCCTTGGCTGTCAT
CAGAACAGAGCGGCAGGGAGCAGATCCGGGTCTATAGTATAAATCCATGT
CGACTGATAACT

BO18416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG18548-PA 633 GstD10-RA 1..630 648..19 3150 100 Minus
CG10045-PA 630 GstD1-RA 278..317 371..332 175 97.5 Minus
CG10045-PB 630 GstD1-RB 278..317 371..332 175 97.5 Minus
CG12242-PA 651 GstD5-RA 211..258 435..388 165 93.7 Minus
CG4421-PA 639 GstD8-RA 544..592 102..54 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..736 648..19 3150 100 Minus
GstD10-RA 852 CG18548-RA 83..712 648..19 3150 100 Minus
GstD1-RB 843 CG10045-RB 211..714 526..23 655 76.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364916..12365545 19..648 3150 100 Plus
3R 32079331 3R 12367946..12368449 23..526 645 75.2 Plus
3R 32079331 3R 12373217..12373674 510..53 400 73.5 Minus
3R 32079331 3R 12375900..12376354 509..55 385 72.3 Minus
3R 32079331 3R 12374268..12374743 530..55 355 71.6 Minus
3R 32079331 3R 12372134..12372338 509..305 320 77.1 Minus
3R 32079331 3R 12380504..12380627 177..54 245 79.8 Minus
3R 32079331 3R 12366573..12366775 324..526 220 73.9 Plus
3R 32079331 3R 12377316..12377485 501..332 205 74.7 Minus
3R 32079331 3R 12378699..12378871 501..332 200 75.7 Minus
3R 32079331 3R 12380142..12380359 539..322 190 72.5 Minus
3R 32079331 3R 12372458..12372589 185..54 180 75.8 Minus
Blast to na_te.dros performed on 2015-01-31 10:12:53 has no hits.

BO18416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:31 Download gff for BO18416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18548-PA 1..633 16..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:07 Download gff for BO18416.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 15..654 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:26 Download gff for BO18416.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 78..716 15..654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:26 Download gff for BO18416.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12364912..12365550 15..654 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:07 Download gff for BO18416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190634..8191272 15..654 99   Plus

BO18416.5prime Sequence

662 bp (662 high quality bases) assembled on 2006-10-13

> BO18416.5prime
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCAAATACTTCGATAACGCAA
GCTTTCTAGACC

BO18416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18548-PA 633 GstD10-RA 1..630 17..646 3150 100 Plus
CG10045-PA 630 GstD1-RA 278..317 294..333 175 97.5 Plus
CG10045-PB 630 GstD1-RB 278..317 294..333 175 97.5 Plus
CG12242-PA 651 GstD5-RA 211..258 230..277 165 93.7 Plus
CG4421-PA 639 GstD8-RA 544..592 563..611 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..736 17..646 3150 100 Plus
GstD10-RA 852 CG18548-RA 83..712 17..646 3150 100 Plus
GstD1-RB 843 CG10045-RB 211..714 139..642 655 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364916..12365545 646..17 3150 100 Minus
3R 32079331 3R 12367946..12368449 642..139 645 75.2 Minus
3R 32079331 3R 12373217..12373674 155..612 400 73.5 Plus
3R 32079331 3R 12375900..12376354 156..610 385 72.3 Plus
3R 32079331 3R 12374268..12374743 135..610 355 71.6 Plus
3R 32079331 3R 12372134..12372338 156..360 320 77.1 Plus
3R 32079331 3R 12380504..12380627 488..611 245 79.8 Plus
3R 32079331 3R 12366573..12366775 341..139 220 73.9 Minus
3R 32079331 3R 12377316..12377485 164..333 205 74.7 Plus
3R 32079331 3R 12378699..12378871 164..333 200 75.7 Plus
3R 32079331 3R 12380142..12380359 126..343 190 72.5 Plus
3R 32079331 3R 12372458..12372589 480..611 180 75.8 Plus
Blast to na_te.dros performed on 2015-01-31 10:13:02 has no hits.

BO18416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:31 Download gff for BO18416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18548-PA 1..633 17..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:09 Download gff for BO18416.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:28 Download gff for BO18416.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 78..716 11..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:28 Download gff for BO18416.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12364912..12365550 11..650 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:09 Download gff for BO18416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190634..8191272 11..650 99   Minus

BO18416.complete Sequence

664 bp assembled on 2006-10-11

GenBank Submission: FJ634412

> BO18416.complete
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCAAATACTTCGATAACGCAA
GCTTTCTAGACCAT

BO18416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 633 CG18548-PB 1..630 17..646 3150 100 Plus
GstD10-RA 633 CG18548-PA 1..630 17..646 3150 100 Plus
GstD1-RB 630 CG10045-PB 123..626 139..642 645 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..736 17..646 3150 100 Plus
GstD10-RA 852 CG18548-RA 83..712 17..646 3150 100 Plus
GstD1-RB 843 CG10045-RB 211..714 139..642 645 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364916..12365545 646..17 3150 100 Minus
3R 32079331 3R 12367946..12368449 642..139 645 75.2 Minus
3R 32079331 3R 12373217..12373674 155..612 400 73.5 Plus
3R 32079331 3R 12375900..12376354 156..610 385 72.3 Plus
3R 32079331 3R 12374268..12374743 135..610 355 71.6 Plus
3R 32079331 3R 12372134..12372338 156..360 320 77.1 Plus
3R 32079331 3R 12380504..12380627 488..611 245 79.8 Plus
3R 32079331 3R 12366573..12366775 341..139 220 73.9 Minus
3R 32079331 3R 12377316..12377485 164..333 205 74.7 Plus
3R 32079331 3R 12378699..12378871 164..333 200 75.7 Plus
3R 32079331 3R 12380142..12380359 126..343 190 72.5 Plus
3R 32079331 3R 12372458..12372589 480..611 180 75.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:26:16 has no hits.

BO18416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:34 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 1..633 17..649 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:26 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:05 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 66..695 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:35 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:30 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 83..712 17..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:30 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12364913..12365545 17..648 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:05 Download gff for BO18416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190635..8191267 17..648 99   Minus

BO18416.pep Sequence

Translation from 16 to 664

> BO18416.pep
MDLYYRPGSAPCRSVLMTAKALGVEFDKKTIINTRAREQFTPEYLKINPQ
HTIPTLHDHGFALWESRAIMVYLVEKYGKDDKLFPKDVQKQALINQRLYF
DMGTLYKSFSEYYYPQIFLKKPANEENYKKIEVAFEFLNTFLEGQTYSAG
GDYSLADIAFLATVSTFDVAGFDFKRYANVARWYENAKKLTPGWEENWAG
CQEFRKYFDNASFLDH

BO18416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-PB 210 CG18548-PB 1..210 1..210 1129 100 Plus
GstD10-PA 210 CG18548-PA 1..210 1..210 1129 100 Plus
GstD1-PB 209 CG10045-PB 2..209 1..209 817 71.3 Plus
GstD1-PA 209 CG10045-PA 2..209 1..209 817 71.3 Plus
GstD5-PA 216 CG12242-PA 1..208 1..209 731 63.2 Plus