BO18422.complete Sequence
487 bp assembled on 2008-11-10
GenBank Submission: KX795890
> BO18422.complete
GAAGTTATCAGTCGACATGGAAATAACACTCGCTCTGATAAAGCCGCACG
TGCTGCGGAATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAG
AACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATC
TGAGCGATTTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAA
CCAGTTTTATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAA
ACCTGCATCCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCG
TGCCGTGTACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCG
ACACTCGCAACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGC
GAGATCAGCATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCA
GGCGAAAAGGGAGGAGGCGGCAAGCTTTCTAGACCAT
BO18422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmdyn-D6-RA | 456 | CG5310-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmdyn-D6-RA | 864 | CG5310-RA | 74..529 | 14..469 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14584026..14584281 | 214..469 | 1280 | 100 | Plus |
| X | 23542271 | X | 14583750..14583952 | 14..216 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:53 has no hits.
BO18422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:59 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmdyn-D6-RA | 49..513 | 2..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:21 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmdyn-D6-RA | 77..529 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:13 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmdyn-D6-RA | 61..513 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:41 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmdyn-D6-RA | 77..529 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:41 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14584029..14584281 | 217..471 | 99 | | Plus |
| X | 14583753..14583952 | 17..216 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:21 Download gff for
BO18422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14477786..14477985 | 17..216 | 100 | -> | Plus |
| arm_X | 14478062..14478314 | 217..471 | 99 | | Plus |
BO18422.pep Sequence
Translation from 16 to 487
> BO18422.pep
MEITLALIKPHVLRNTYAMQQIRALISQNFTILDQKEVCITKELSERFYA
EHKGKFFYHRLTSFMNSGPSYALILQSETCIQKWRSLLGPTKVFRAVYSD
PNCIRALYGISDTRNACHGSDSEASALREISILFPEFDAAVGSRQAKREE
AASFLDH
BO18422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmdyn-D6-PA | 151 | CG5310-PA | 1..151 | 1..151 | 776 | 100 | Plus |
| awd-PE | 153 | CG2210-PE | 6..148 | 2..147 | 156 | 29.5 | Plus |
| awd-PD | 168 | CG2210-PD | 21..163 | 2..147 | 156 | 29.5 | Plus |
| awd-PC | 168 | CG2210-PC | 21..163 | 2..147 | 156 | 29.5 | Plus |
