Clone Sequence Records
BO18433.3prime Sequence
621 bp (484 high quality bases) assembled on 2006-10-13
> BO18433.3prime
ATAGGTCTAGAAAGCTTGCCTTTCTGTACTCTAGCTTTAAGTGATCATTT
TTCGGATTCGTCATGGGCATGTCCACCGATATGGTCCTGTTGAAGTTCTC
GTAGTCGACAATGTAGCGCTCGTTTTGGGCGTCGTAATGGATGATATTGA
CGAACCGCTGGCCCCAGAAAATCTCCCTTGGCAGATAGGACGTCTTGGCC
TCCGTCATCTGCGCTGTGGCAGGCGAAGTGCCCACAATGGACACATACAA
CTCAAATTGGGCAGCATTGAAGAGTTTCGCTGTGGTGAACTGAGACAACG
GGCTGGTCTCATCGATGACATGGCACACCACATCGGGCCAGAGAATAATC
TGCTCCCCATTCCCCTCCAGCTTCAGTTCCACGTGACTTTTTATAGTCTC
ACCCTCGCGCGTGCGTTTGTCCACGATGATGTAGACTCGTATCTTGGACT
CGATGGACTGCTGCTCGCGGGGATCACAGACGCGGATGAGCAAACAAAGC
CTGCCGTCGCGATAACAGATCACCGCCTTATCGCTGAACTTCAGCTTGGT
CAGCTGCCTCGCCGGCCGTGCGGTCTTGGCATAGATCACGCTCACCTTAC
AGCCCTCGATTAGGGCCGCAC
BO18433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10369-PA | 1329 | Irk3-RA | 725..1326 | 621..20 | 2960 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-RD | 1820 | CG10369-RD | 950..1551 | 621..20 | 2980 | 99.7 | Minus |
| Irk3-RA | 1808 | CG10369-RA | 938..1539 | 621..20 | 2980 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18711340..18711734 | 20..414 | 1975 | 100 | Plus |
| 2L | 23513712 | 2L | 18712004..18712111 | 414..521 | 525 | 99.1 | Plus |
| 2L | 23513712 | 2L | 18712189..18712289 | 521..621 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:12:01 has no hits.
BO18433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:46 Download gff for
BO18433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10369-PA | 725..1329 | 17..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:42:40 Download gff for
BO18433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 938..1543 | 16..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:40 Download gff for
BO18433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 938..1543 | 16..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:40 Download gff for
BO18433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18711335..18711733 | 16..413 | 99 | <- | Plus |
| 2L | 18712004..18712110 | 414..520 | 99 | <- | Plus |
| 2L | 18712189..18712289 | 521..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:42:40 Download gff for
BO18433.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18711335..18711733 | 16..413 | 99 | <- | Plus |
| arm_2L | 18712004..18712110 | 414..520 | 99 | <- | Plus |
| arm_2L | 18712189..18712289 | 521..621 | 99 | | Plus |
BO18433.5prime Sequence
749 bp (697 high quality bases) assembled on 2006-10-13
> BO18433.5prime
GAAGTTATCACTCGACATGCAATCGGACGCATCTCCCCTGGGAGCTGCTG
CCACGGATTCCCTAACCATGCATCGCTCAACCTCCATGCCGGTGAAGCCC
AAGCCACTGGAGCAGAAGCCACTGCTCCGTTCCTCCGAAAAGGAGACGGT
CAATGCGTCCGATTACTATCCGGAGAGTCCGGGATTCGTACGGCGCAGAA
GGTCAAAAGCAGCCGGCGATCACCTGGAAACACGCAGCGAGCAAAATTTC
CCCTACGCACACGACTGGGCGGGCAGTACGATTGAGCTTACTCCAGATTT
GGGATCCGGACCGCGGACTTCCTCCTCCGATGGACTGAAACGCAGCCTTA
ATCGCGTGATGGAAAAGAACGGCAAGGAGAACGTTGTGTTCCGCCGCATT
CCGGAGAAGTCATGGCGCTACATGCGGGATCTGGTCACCACGCTGATGGA
ACTGGAGTGGAAGTATATGCTGACCCTGTTCCTGGGCAGCTACTTCCTCA
GCTGGCTGCTCTTCGCCGCCCTCTGCTACGTGGTGGCCTACTCGCACGGT
GACTTCATCTTCGATCCGGTAAGTGGCAAGCGAATGGGCGAGGGCGTGGA
TCCCTGCATCTACGGGGTGCACAGCTGGGTGGCCATGATCATATACTTCT
GTGGAAACACAGACGACCCTCGGATTCCGCAAAAAATACGCCAGCGAGGA
ATGTCCGGAGACGATCTTCTTGTTCGTCATGCAGATGTTGAATGCGGCC
BO18433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10369-PA | 1329 | Irk3-RA | 1..732 | 17..749 | 3475 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-RA | 1808 | CG10369-RA | 213..945 | 16..749 | 3555 | 99 | Plus |
| Irk3-RD | 1820 | CG10369-RD | 213..957 | 16..749 | 3425 | 97.5 | Plus |
| Irk3-RC | 918 | CG10369-RC | 213..642 | 16..445 | 2135 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18712282..18712589 | 749..441 | 1405 | 97.7 | Minus |
| 2L | 23513712 | 2L | 18713306..18713536 | 246..16 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 18712952..18713150 | 445..247 | 980 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:14:39 has no hits.
BO18433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:46 Download gff for
BO18433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10369-PA | 1..732 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:04:48 Download gff for
BO18433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 205..945 | 7..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:03 Download gff for
BO18433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 205..945 | 7..749 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:03 Download gff for
BO18433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18712282..18712584 | 446..749 | 98 | <- | Minus |
| 2L | 18712952..18713150 | 247..445 | 99 | <- | Minus |
| 2L | 18713306..18713544 | 7..246 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:04:48 Download gff for
BO18433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18712282..18712584 | 446..749 | 98 | <- | Minus |
| arm_2L | 18712952..18713150 | 247..445 | 99 | <- | Minus |
| arm_2L | 18713306..18713544 | 7..246 | 98 | | Minus |
BO18433.complete Sequence
1360 bp assembled on 2008-11-10
GenBank Submission: KX798562
> BO18433.complete
GAAGTTATCAGTCGACATGCAATCGGACGCATCTCCCCTGGGAGCTGCTG
CCACGGATTCCCTAACCATGCATCGCTCAACCTCCATGCCGGTGAAGCCC
AAGCCACTGGAGCAGAAGCCACTGCTCCGTTCCTCCGAAAAGGAGACGGT
CAATGCGTCCGATTACTATCCGGAGAGTCCGGGATTCGTACGGCGCAGAA
GGTCAAAAGCAGCCGGCGATCACCTGGAAACACGCAGCGAGCAAAATTTC
CCCTACGCACACGACTGGGCGGGCAGTACGATTGAGCTTACTCCAGATTT
GGGATCCGGACCGCGGACTTCCTCCTCCGATGGACTGAGACGCAGCCTTA
ATCGCGTGATGGAAAAGAACGGCAAGGAGAACGTTGTGTTCCGCCGCATT
CCGGAGAAGTCATGGCGCTACATGCGGGATCTGGTCACCACGCTGATGGA
ACTGGAGTGGAAGTATATGCTGACCCTGTTCCTGGGCAGCTACTTCCTCA
GCTGGCTGCTCTTCGCCGCCCTCTGCTACGTGGTGGCCTACTCGCACGGT
GACTTCATCTTCGATCCGGTAAGTGGCAAGCGAATGGGCGAGGGCGTGGA
TCCCTGCATCTACGGGGTGCACAGCTGGGTGGCCATGATCATATACTCTG
TGGAAACACAGACGACCCTCGGATTCGGCGAAAAATACGCCAGCGAGGAG
TGTCCGGAGACGATCTTCCTGTTCGTCATGCAGATGTTGAGTGCGGCCCT
AATCGAGGGCTGTATGGTGAGCGTGATCTATGCCAAGACCGCACGGCCGG
CGAGGCAGCTGACCAAGCTGAAGTTCAGCGATAAGGCGGTGATCTGTTAT
CGCGACGGCAGGCTTTGTTTGCTCTTCCGCGTCTGTGATCCCCGCGAGCA
GCAGTCCATCGAGTCCAAGATACGAGTCTACATCATCGTGGACAAACGCA
CGCGCGAGGGTGAGACTATAAAAAGTCACGTGGAACTGAAGCTGGAGGGG
AATGGGGAGCAGATTATTCTCTGGCCCGATGTGGTGTGCCATGTCATCGA
TGAGACCAGCCCGTTGTCTCAGTTCACCACAGCGAAACTCTTCAATGCTG
CCCAATTTGAGTTGTATGTGTCCATTGTGGGCACTTCGCCTGCCACAGCG
CAGATGACGGAGGCCAAGACGTCCTATCTGCCAAGGGAGATTTTCTGGGG
CCAGCGGTTCGTCAATATCATCCATTACGACGCCCAAAACGAGCGCTACA
TTGTCGACTACGAGAACTTCAACAGGACCATATCGGTGGACATGCCCATG
ACGAATCCGAAAAATGATCACTTAAAGCTAGAGTACAGAAAGGCAAGCTT
TCTAGACCAT
BO18433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-RA | 1329 | CG10369-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| Irk3-RD | 1341 | CG10369-PD | 1..1338 | 17..1342 | 6475 | 99.1 | Plus |
| Irk3-RC | 618 | CG10369-PC | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-RA | 1808 | CG10369-RA | 213..1539 | 16..1342 | 6635 | 100 | Plus |
| Irk3-RD | 1820 | CG10369-RD | 213..1551 | 16..1342 | 6480 | 99.1 | Plus |
| Irk3-RC | 918 | CG10369-RC | 213..642 | 16..445 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18712189..18712589 | 841..441 | 1990 | 99.8 | Minus |
| 2L | 23513712 | 2L | 18711340..18711734 | 1342..948 | 1975 | 100 | Minus |
| 2L | 23513712 | 2L | 18713306..18713536 | 246..16 | 1155 | 100 | Minus |
| 2L | 23513712 | 2L | 18712952..18713150 | 445..247 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 18712004..18712111 | 948..841 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:18 has no hits.
BO18433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:16 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 228..1558 | 16..1346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:51 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 214..1539 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:42 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 229..1554 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:00 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk3-RA | 214..1539 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:00 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18713306..18713535 | 17..246 | 100 | | Minus |
| 2L | 18712004..18712110 | 842..948 | 100 | <- | Minus |
| 2L | 18712189..18712584 | 446..841 | 100 | <- | Minus |
| 2L | 18712952..18713150 | 247..445 | 100 | <- | Minus |
| 2L | 18711337..18711733 | 949..1344 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:51 Download gff for
BO18433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18712004..18712110 | 842..948 | 100 | <- | Minus |
| arm_2L | 18711337..18711733 | 949..1344 | 99 | <- | Minus |
| arm_2L | 18712189..18712584 | 446..841 | 100 | <- | Minus |
| arm_2L | 18712952..18713150 | 247..445 | 100 | <- | Minus |
| arm_2L | 18713306..18713535 | 17..246 | 100 | | Minus |
BO18433.pep Sequence
Translation from 16 to 1360
> BO18433.pep
MQSDASPLGAAATDSLTMHRSTSMPVKPKPLEQKPLLRSSEKETVNASDY
YPESPGFVRRRRSKAAGDHLETRSEQNFPYAHDWAGSTIELTPDLGSGPR
TSSSDGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKY
MLTLFLGSYFLSWLLFAALCYVVAYSHGDFIFDPVSGKRMGEGVDPCIYG
VHSWVAMIIYSVETQTTLGFGEKYASEECPETIFLFVMQMLSAALIEGCM
VSVIYAKTARPARQLTKLKFSDKAVICYRDGRLCLLFRVCDPREQQSIES
KIRVYIIVDKRTREGETIKSHVELKLEGNGEQIILWPDVVCHVIDETSPL
SQFTTAKLFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVN
IIHYDAQNERYIVDYENFNRTISVDMPMTNPKNDHLKLEYRKASFLDH
BO18433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk3-PA | 442 | CG10369-PA | 1..442 | 1..442 | 2315 | 100 | Plus |
| Irk3-PD | 446 | CG10369-PD | 1..446 | 1..442 | 2300 | 99.1 | Plus |
| Irk3-PC | 205 | CG10369-PC | 1..144 | 1..144 | 743 | 99.3 | Plus |
| Irk1-PH | 526 | CG44159-PH | 12..356 | 108..444 | 632 | 36.7 | Plus |
| Irk1-PC | 526 | CG44159-PC | 12..356 | 108..444 | 632 | 36.7 | Plus |
