Clone BO18434 Report

Search the DGRC for BO18434

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCyp28c1-RA
Protein status:BO18434.pep: validated full length
Sequenced Size:1549

Clone Sequence Records

BO18434.3prime Sequence

860 bp (716 high quality bases) assembled on 2006-10-13

> BO18434.3prime
ATGGTCTAGAAAGCTTGCTTTCGTAGTCACATTTTTCCGTGGAACGAACT
GCAGCCAAATGCCGCCCTTGTGAACGCCCACAAAGATCAGGGGATCTAAC
TCTGTGCCGTTGAGTGTCCGTGGACTGACCACGACCTCGAATCGCTGGAC
AATGGCAGCCAGTGCGGCTTTGGCCATGGCCAGACCCAATCGCATCCCGA
CACACTGGCGTGGCCCGTTTCCGAATCCCAGAAAGATGCCCTGCTGTTTG
CAGTTTTTCAGACCGCCGTCGAGGAATCTTTCGGGCCGGAAAACATCCGG
TTCCGGATACAGATCCGGATCATTGTGCAGAGCGTAGATGGGCACCATCA
CATGGTCGCCAGGCCTCAGCTTCAGAGGTTCCGAGTGATGGCTACCCCGA
AGTTCGTACTCCTTTGTGCAGGTCTTTGATGCCCAGCCGCCAGCCGGATA
GATTCGTAGGCTTTCATTAAAGCAGGCACTCAGATAGGGCAGATCTATCA
GTGCATCCAGATCGGGCAGATAACCACCGGGATTGACCAACTGGAGTTCC
TCGTACAAACGCCGCTGGCAATCTGGATTACGACCAAGCAGCAGAAGACA
ATGGGCAATGCTATTGGAGGTGGTGTCCAGGCCGTCGAACATGAAGGTCA
TGGCATGCGAGGCCATGTCCTCCTCGCTGAGATCCAGTTCCCTCTGCATC
TCGAGCAGATGGTTGATGAAGTCGTTGCGTTCCTGGTGCTTGGAACGACG
CAAGCGCAGAGCTTCGCTAATCATCTGGCCGTAGAATCGATCGTGGGAAC
GGGGAAAGACCTTGGGACGCAGCCAGCGCGGAAGATTCGGGAGAAGCCAT
GGACGGGGCC

BO18434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1895-PA 1518 Cyp28c1-RA 677..1515 856..19 4105 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 675..1517 860..19 4145 99.5 Minus
Cyp28c1-RA 1543 CG1895-RA 675..1517 860..19 4145 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11840909..11841355 465..19 2235 100 Minus
X 23542271 X 11840400..11840672 860..589 1270 98.5 Minus
X 23542271 X 11840726..11840850 589..465 625 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:03:08 has no hits.

BO18434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:47 Download gff for BO18434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1895-PA 673..1518 15..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:22 Download gff for BO18434.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 675..1520 15..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:18 Download gff for BO18434.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 675..1520 15..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:18 Download gff for BO18434.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11840727..11840850 465..588 100 -> Minus
X 11840400..11840672 589..860 98 -> Minus
X 11840910..11841358 15..464 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:22 Download gff for BO18434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11734433..11734705 589..860 98 -> Minus
arm_X 11734760..11734883 465..588 100 -> Minus
arm_X 11734943..11735391 15..464 99   Minus

BO18434.5prime Sequence

809 bp (738 high quality bases) assembled on 2006-10-13

> BO18434.5prime
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCC

BO18434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1895-PA 1518 Cyp28c1-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 2..794 16..808 3965 100 Plus
Cyp28c1-RA 1543 CG1895-RA 2..794 16..808 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11839858..11840203 205..550 1730 100 Plus
X 23542271 X 11840262..11840519 551..808 1290 100 Plus
X 23542271 X 11839604..11839798 11..205 960 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:41:04 has no hits.

BO18434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:47 Download gff for BO18434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1895-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:29:34 Download gff for BO18434.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 2..794 16..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:23 Download gff for BO18434.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 2..794 16..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:23 Download gff for BO18434.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11840262..11840519 551..809 99   Plus
X 11839604..11839797 11..204 99 -> Plus
X 11839858..11840203 205..550 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:29:34 Download gff for BO18434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11733637..11733830 11..204 99 -> Plus
arm_X 11733891..11734236 205..550 100 -> Plus
arm_X 11734295..11734552 551..809 99   Plus

BO18434.complete Sequence

1549 bp assembled on 2007-03-23

GenBank Submission: FJ634413

> BO18434.complete
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCAAGCACCAGGAACGCAACGACTTCATCAACCATCTGCTCGAG
ATGCAGAGGGAACTGGATCTCAGCGAGGAGGACATGGCCTCGCATGCCAT
GACCTTCATGTTCGACGGCCTGGACACCACCTCCAATAGCATTGCCCATT
GTCTTCTGCTGCTTGGTCGTAATCCAGATTGCCAGCGGCGTTTGTACGAG
GAACTCCAGTTGGTCAATCCCGGTGGTTATCTGCCCGATCTGGATGCACT
GATAGATCTGCCCTATCTGAGTGCCTGCTTTAATGAAAGCCTACGAATCT
ATCCGGCTGGCGGCTGGGCATCAAAGACCTGCACAAAGGAGTACGAACTT
CGGGGTAGCCATCACTCGGAACCTCTGAAGCTGAGGCCTGGCGACCATGT
GATGGTGCCCATCTACGCTCTGCACAATGATCCGGATCTGTATCCGGAAC
CGGATGTTTTCCGGCCCGAAAGATTCCTCGACGGCGGTCTGAAAAACTGC
AAACAGCAGGGCATCTTTCTGGGATTCGGAAACGGGCCACGCCAGTGTGT
CGGGATGCGATTGGGTCTGGCCATGGCCAAAGCCGCACTGGCTGCCATTG
TCCAGCGATTCGAGGTCGTGGTCAGTCCACGGACACTCAACGGCACAGAG
TTAGATCCCCTGATCTTTGTGGGCGTTCACAAGGGCGGCATTTGGCTGCA
GTTCGTTCCACGGAAAAATGTGACTACGAAAGCAAGCTTTCTAGACCAT

BO18434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1518 CG1895-PB 1..1515 17..1531 7575 100 Plus
Cyp28c1-RA 1518 CG1895-PA 1..1515 17..1531 7575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 2..1517 16..1531 7580 100 Plus
Cyp28c1-RA 1543 CG1895-RA 2..1517 16..1531 7580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11840909..11841355 1085..1531 2235 100 Plus
X 23542271 X 11840262..11840672 551..961 2055 100 Plus
X 23542271 X 11839858..11840203 205..550 1730 100 Plus
X 23542271 X 11839604..11839798 11..205 960 99.5 Plus
X 23542271 X 11840726..11840850 961..1085 625 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:55:55 has no hits.

BO18434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:05 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:05 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:17 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 9..1517 23..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:06 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:54 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 9..1517 23..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:54 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
X 11839616..11839797 23..204 100 -> Plus
X 11839858..11840203 205..550 100 -> Plus
X 11840262..11840672 551..961 100 -> Plus
X 11840727..11840850 962..1085 100 -> Plus
X 11840910..11841355 1086..1533 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:17 Download gff for BO18434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11734760..11734883 962..1085 100 -> Plus
arm_X 11733649..11733830 23..204 100 -> Plus
arm_X 11733891..11734236 205..550 100 -> Plus
arm_X 11734295..11734705 551..961 100 -> Plus
arm_X 11734943..11735388 1086..1533 99   Plus

BO18434.pep Sequence

Translation from 16 to 1549

> BO18434.pep
MFGSLLLGIATLLGAIYAFLVSNFGHWRRRGVTEPRALPLFGSFPNMIWP
RQHFTMDMRDIYMHYRNTHSYVGCYLLRAPKLLVLEPRLVYEIYVSAFSH
FENNDASKMVDIAKDRLVALNPFVLEGEEWRHQRAVFSTLLTNGRIRTTH
AIMQRVCLDLCQFIAIKSAGGKDLDCIDLGLRFTGESLFDCVLGIQARTF
TDNPLPVVRQNHEMSAENRGLAIAGAVHGLFPNLPRWLRPKVFPRSHDRF
YGQMISEALRLRRSKHQERNDFINHLLEMQRELDLSEEDMASHAMTFMFD
GLDTTSNSIAHCLLLLGRNPDCQRRLYEELQLVNPGGYLPDLDALIDLPY
LSACFNESLRIYPAGGWASKTCTKEYELRGSHHSEPLKLRPGDHVMVPIY
ALHNDPDLYPEPDVFRPERFLDGGLKNCKQQGIFLGFGNGPRQCVGMRLG
LAMAKAALAAIVQRFEVVVSPRTLNGTELDPLIFVGVHKGGIWLQFVPRK
NVTTKASFLDH

BO18434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-PB 505 CG1895-PB 1..505 1..505 2690 100 Plus
Cyp28c1-PA 505 CG1895-PA 1..505 1..505 2690 100 Plus
Cyp28d1-PA 502 CG10833-PA 8..501 6..499 931 38.2 Plus
Cyp28d2-PA 501 CG6081-PA 6..498 4..496 854 34.5 Plus
Cyp28a5-PA 505 CG8864-PA 9..500 9..494 835 34.2 Plus