Clone Sequence Records
BO18434.3prime Sequence
860 bp (716 high quality bases) assembled on 2006-10-13
> BO18434.3prime
ATGGTCTAGAAAGCTTGCTTTCGTAGTCACATTTTTCCGTGGAACGAACT
GCAGCCAAATGCCGCCCTTGTGAACGCCCACAAAGATCAGGGGATCTAAC
TCTGTGCCGTTGAGTGTCCGTGGACTGACCACGACCTCGAATCGCTGGAC
AATGGCAGCCAGTGCGGCTTTGGCCATGGCCAGACCCAATCGCATCCCGA
CACACTGGCGTGGCCCGTTTCCGAATCCCAGAAAGATGCCCTGCTGTTTG
CAGTTTTTCAGACCGCCGTCGAGGAATCTTTCGGGCCGGAAAACATCCGG
TTCCGGATACAGATCCGGATCATTGTGCAGAGCGTAGATGGGCACCATCA
CATGGTCGCCAGGCCTCAGCTTCAGAGGTTCCGAGTGATGGCTACCCCGA
AGTTCGTACTCCTTTGTGCAGGTCTTTGATGCCCAGCCGCCAGCCGGATA
GATTCGTAGGCTTTCATTAAAGCAGGCACTCAGATAGGGCAGATCTATCA
GTGCATCCAGATCGGGCAGATAACCACCGGGATTGACCAACTGGAGTTCC
TCGTACAAACGCCGCTGGCAATCTGGATTACGACCAAGCAGCAGAAGACA
ATGGGCAATGCTATTGGAGGTGGTGTCCAGGCCGTCGAACATGAAGGTCA
TGGCATGCGAGGCCATGTCCTCCTCGCTGAGATCCAGTTCCCTCTGCATC
TCGAGCAGATGGTTGATGAAGTCGTTGCGTTCCTGGTGCTTGGAACGACG
CAAGCGCAGAGCTTCGCTAATCATCTGGCCGTAGAATCGATCGTGGGAAC
GGGGAAAGACCTTGGGACGCAGCCAGCGCGGAAGATTCGGGAGAAGCCAT
GGACGGGGCC
BO18434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1895-PA | 1518 | Cyp28c1-RA | 677..1515 | 856..19 | 4105 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 675..1517 | 860..19 | 4145 | 99.5 | Minus |
Cyp28c1-RA | 1543 | CG1895-RA | 675..1517 | 860..19 | 4145 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11840909..11841355 | 465..19 | 2235 | 100 | Minus |
X | 23542271 | X | 11840400..11840672 | 860..589 | 1270 | 98.5 | Minus |
X | 23542271 | X | 11840726..11840850 | 589..465 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:03:08 has no hits.
BO18434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:47 Download gff for
BO18434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1895-PA | 673..1518 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:05:22 Download gff for
BO18434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 675..1520 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:18 Download gff for
BO18434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 675..1520 | 15..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:18 Download gff for
BO18434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11840727..11840850 | 465..588 | 100 | -> | Minus |
X | 11840400..11840672 | 589..860 | 98 | -> | Minus |
X | 11840910..11841358 | 15..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:05:22 Download gff for
BO18434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11734433..11734705 | 589..860 | 98 | -> | Minus |
arm_X | 11734760..11734883 | 465..588 | 100 | -> | Minus |
arm_X | 11734943..11735391 | 15..464 | 99 | | Minus |
BO18434.5prime Sequence
809 bp (738 high quality bases) assembled on 2006-10-13
> BO18434.5prime
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCC
BO18434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1895-PA | 1518 | Cyp28c1-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 2..794 | 16..808 | 3965 | 100 | Plus |
Cyp28c1-RA | 1543 | CG1895-RA | 2..794 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11839858..11840203 | 205..550 | 1730 | 100 | Plus |
X | 23542271 | X | 11840262..11840519 | 551..808 | 1290 | 100 | Plus |
X | 23542271 | X | 11839604..11839798 | 11..205 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:41:04 has no hits.
BO18434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:47 Download gff for
BO18434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1895-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:29:34 Download gff for
BO18434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 2..794 | 16..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:23 Download gff for
BO18434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 2..794 | 16..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:23 Download gff for
BO18434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11840262..11840519 | 551..809 | 99 | | Plus |
X | 11839604..11839797 | 11..204 | 99 | -> | Plus |
X | 11839858..11840203 | 205..550 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:29:34 Download gff for
BO18434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11733637..11733830 | 11..204 | 99 | -> | Plus |
arm_X | 11733891..11734236 | 205..550 | 100 | -> | Plus |
arm_X | 11734295..11734552 | 551..809 | 99 | | Plus |
BO18434.complete Sequence
1549 bp assembled on 2007-03-23
GenBank Submission: FJ634413
> BO18434.complete
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCAAGCACCAGGAACGCAACGACTTCATCAACCATCTGCTCGAG
ATGCAGAGGGAACTGGATCTCAGCGAGGAGGACATGGCCTCGCATGCCAT
GACCTTCATGTTCGACGGCCTGGACACCACCTCCAATAGCATTGCCCATT
GTCTTCTGCTGCTTGGTCGTAATCCAGATTGCCAGCGGCGTTTGTACGAG
GAACTCCAGTTGGTCAATCCCGGTGGTTATCTGCCCGATCTGGATGCACT
GATAGATCTGCCCTATCTGAGTGCCTGCTTTAATGAAAGCCTACGAATCT
ATCCGGCTGGCGGCTGGGCATCAAAGACCTGCACAAAGGAGTACGAACTT
CGGGGTAGCCATCACTCGGAACCTCTGAAGCTGAGGCCTGGCGACCATGT
GATGGTGCCCATCTACGCTCTGCACAATGATCCGGATCTGTATCCGGAAC
CGGATGTTTTCCGGCCCGAAAGATTCCTCGACGGCGGTCTGAAAAACTGC
AAACAGCAGGGCATCTTTCTGGGATTCGGAAACGGGCCACGCCAGTGTGT
CGGGATGCGATTGGGTCTGGCCATGGCCAAAGCCGCACTGGCTGCCATTG
TCCAGCGATTCGAGGTCGTGGTCAGTCCACGGACACTCAACGGCACAGAG
TTAGATCCCCTGATCTTTGTGGGCGTTCACAAGGGCGGCATTTGGCTGCA
GTTCGTTCCACGGAAAAATGTGACTACGAAAGCAAGCTTTCTAGACCAT
BO18434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1518 | CG1895-PB | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Cyp28c1-RA | 1518 | CG1895-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 2..1517 | 16..1531 | 7580 | 100 | Plus |
Cyp28c1-RA | 1543 | CG1895-RA | 2..1517 | 16..1531 | 7580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11840909..11841355 | 1085..1531 | 2235 | 100 | Plus |
X | 23542271 | X | 11840262..11840672 | 551..961 | 2055 | 100 | Plus |
X | 23542271 | X | 11839858..11840203 | 205..550 | 1730 | 100 | Plus |
X | 23542271 | X | 11839604..11839798 | 11..205 | 960 | 99.5 | Plus |
X | 23542271 | X | 11840726..11840850 | 961..1085 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:55:55 has no hits.
BO18434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:05 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 1..1518 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:05 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 1..1518 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:17 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 9..1517 | 23..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:06 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 1..1518 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:54 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 9..1517 | 23..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:54 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11839616..11839797 | 23..204 | 100 | -> | Plus |
X | 11839858..11840203 | 205..550 | 100 | -> | Plus |
X | 11840262..11840672 | 551..961 | 100 | -> | Plus |
X | 11840727..11840850 | 962..1085 | 100 | -> | Plus |
X | 11840910..11841355 | 1086..1533 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:17 Download gff for
BO18434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11734760..11734883 | 962..1085 | 100 | -> | Plus |
arm_X | 11733649..11733830 | 23..204 | 100 | -> | Plus |
arm_X | 11733891..11734236 | 205..550 | 100 | -> | Plus |
arm_X | 11734295..11734705 | 551..961 | 100 | -> | Plus |
arm_X | 11734943..11735388 | 1086..1533 | 99 | | Plus |
BO18434.pep Sequence
Translation from 16 to 1549
> BO18434.pep
MFGSLLLGIATLLGAIYAFLVSNFGHWRRRGVTEPRALPLFGSFPNMIWP
RQHFTMDMRDIYMHYRNTHSYVGCYLLRAPKLLVLEPRLVYEIYVSAFSH
FENNDASKMVDIAKDRLVALNPFVLEGEEWRHQRAVFSTLLTNGRIRTTH
AIMQRVCLDLCQFIAIKSAGGKDLDCIDLGLRFTGESLFDCVLGIQARTF
TDNPLPVVRQNHEMSAENRGLAIAGAVHGLFPNLPRWLRPKVFPRSHDRF
YGQMISEALRLRRSKHQERNDFINHLLEMQRELDLSEEDMASHAMTFMFD
GLDTTSNSIAHCLLLLGRNPDCQRRLYEELQLVNPGGYLPDLDALIDLPY
LSACFNESLRIYPAGGWASKTCTKEYELRGSHHSEPLKLRPGDHVMVPIY
ALHNDPDLYPEPDVFRPERFLDGGLKNCKQQGIFLGFGNGPRQCVGMRLG
LAMAKAALAAIVQRFEVVVSPRTLNGTELDPLIFVGVHKGGIWLQFVPRK
NVTTKASFLDH
BO18434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-PB | 505 | CG1895-PB | 1..505 | 1..505 | 2690 | 100 | Plus |
Cyp28c1-PA | 505 | CG1895-PA | 1..505 | 1..505 | 2690 | 100 | Plus |
Cyp28d1-PA | 502 | CG10833-PA | 8..501 | 6..499 | 931 | 38.2 | Plus |
Cyp28d2-PA | 501 | CG6081-PA | 6..498 | 4..496 | 854 | 34.5 | Plus |
Cyp28a5-PA | 505 | CG8864-PA | 9..500 | 9..494 | 835 | 34.2 | Plus |