Clone BO18443 Report

Search the DGRC for BO18443

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG32971-RA
Protein status:BO18443.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO18443.3prime Sequence

467 bp (467 high quality bases) assembled on 2006-10-13

> BO18443.3prime
ATGGTCTAGAAAGCTTGCAACAAGTAAATCCTTTGAATCCAAGTCAGGTC
CACCGCTCTTTTCGTAGTACTCGTACTCCAGTTCGGACAGCTCCTCTTCC
AAATCCTTAACCATTTTGATAAGTGTTTGGTCATACTCGGTCACCTTGGC
ATGCATTGCCTCCGATTGTCTATCCATTTCCTCTTCGATGTTGGAATAAT
CGTAAATAATCTGATACTCCTTGACATCATGGACTAGCTTAATTAGAGCT
TCTCCTGCGCGAACGAAATTGCCAGCACGCACCTGCATTTCAAAAGCATT
CAATTCTTGTTCTGTATCATTTGTGATTTGGCCCGGAGTCCTCGGGGAAA
CTAATTTAAGGAGCTCCTCAAAGTTGAGCAACATGCTTAGGACGTTATCC
TTTAGCTGCGTTTTAAAGGATTTTAGCAGGGCCTCGTCCTTCGAGTCAGA
CATGTCGACTGATAACT

BO18443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PA 438 CG32971-RA 1..435 453..19 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..661 455..19 2185 100 Minus
CG32971-RB 810 CG32971-RB 286..722 455..19 2185 100 Minus
CG32971-RA 731 CG32971-RA 207..643 455..19 2185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277914 455..19 2185 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:48:56 has no hits.

BO18443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:59 Download gff for BO18443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-PA 1..438 15..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:53 Download gff for BO18443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 11..455 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:45 Download gff for BO18443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 11..455 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:45 Download gff for BO18443.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14277478..14277919 11..455 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:53 Download gff for BO18443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277478..14277919 11..455 99   Minus

BO18443.5prime Sequence

467 bp (467 high quality bases) assembled on 2006-10-13

> BO18443.5prime
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TGCAAGCTTTCTAGACC

BO18443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PA 438 CG32971-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..661 15..451 2185 100 Plus
CG32971-RB 810 CG32971-RB 286..722 15..451 2185 100 Plus
CG32971-RA 731 CG32971-RA 207..643 15..451 2185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277914 15..451 2185 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:53:42 has no hits.

BO18443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:00 Download gff for BO18443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-PA 1..438 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:37 Download gff for BO18443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 15..459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:08 Download gff for BO18443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 15..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:08 Download gff for BO18443.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14277478..14277919 15..459 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:37 Download gff for BO18443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277478..14277919 15..459 99   Plus

BO18443.complete Sequence

469 bp assembled on 2006-10-11

GenBank Submission: FJ634416

> BO18443.complete
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TGCAAGCTTTCTAGACCAT

BO18443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 438 CG32971-PC 1..435 17..451 2175 100 Plus
CG32971-RB 438 CG32971-PB 1..435 17..451 2175 100 Plus
CG32971-RA 438 CG32971-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..661 15..451 2185 100 Plus
CG32971-RB 810 CG32971-RB 286..722 15..451 2185 100 Plus
CG32971-RA 731 CG32971-RA 207..643 15..451 2185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277914 15..451 2185 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:57:11 has no hits.

BO18443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:37 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RC 1..438 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:31 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RB 312..753 15..459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:18 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 209..643 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:38 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RB 312..753 15..459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:56 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 209..643 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:56 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14277480..14277914 17..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:18 Download gff for BO18443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277480..14277914 17..453 99   Plus

BO18443.pep Sequence

Translation from 16 to 469

> BO18443.pep
MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQE
LNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAM
HAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLVASFLD
H

BO18443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PC 145 CG32971-PC 1..145 1..145 727 100 Plus
CG32971-PB 145 CG32971-PB 1..145 1..145 727 100 Plus
CG32971-PA 145 CG32971-PA 1..145 1..145 727 100 Plus
MED22-PA 143 CG3034-PA 15..138 7..130 277 46.8 Plus