Clone Sequence Records
BO18443.3prime Sequence
467 bp (467 high quality bases) assembled on 2006-10-13
> BO18443.3prime
ATGGTCTAGAAAGCTTGCAACAAGTAAATCCTTTGAATCCAAGTCAGGTC
CACCGCTCTTTTCGTAGTACTCGTACTCCAGTTCGGACAGCTCCTCTTCC
AAATCCTTAACCATTTTGATAAGTGTTTGGTCATACTCGGTCACCTTGGC
ATGCATTGCCTCCGATTGTCTATCCATTTCCTCTTCGATGTTGGAATAAT
CGTAAATAATCTGATACTCCTTGACATCATGGACTAGCTTAATTAGAGCT
TCTCCTGCGCGAACGAAATTGCCAGCACGCACCTGCATTTCAAAAGCATT
CAATTCTTGTTCTGTATCATTTGTGATTTGGCCCGGAGTCCTCGGGGAAA
CTAATTTAAGGAGCTCCTCAAAGTTGAGCAACATGCTTAGGACGTTATCC
TTTAGCTGCGTTTTAAAGGATTTTAGCAGGGCCTCGTCCTTCGAGTCAGA
CATGTCGACTGATAACT
BO18443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PA | 438 | CG32971-RA | 1..435 | 453..19 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..661 | 455..19 | 2185 | 100 | Minus |
CG32971-RB | 810 | CG32971-RB | 286..722 | 455..19 | 2185 | 100 | Minus |
CG32971-RA | 731 | CG32971-RA | 207..643 | 455..19 | 2185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277914 | 455..19 | 2185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:48:56 has no hits.
BO18443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:22:59 Download gff for
BO18443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-PA | 1..438 | 15..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:53 Download gff for
BO18443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 11..455 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:45 Download gff for
BO18443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 11..455 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:45 Download gff for
BO18443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277478..14277919 | 11..455 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:53 Download gff for
BO18443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277478..14277919 | 11..455 | 99 | | Minus |
BO18443.5prime Sequence
467 bp (467 high quality bases) assembled on 2006-10-13
> BO18443.5prime
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TGCAAGCTTTCTAGACC
BO18443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PA | 438 | CG32971-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..661 | 15..451 | 2185 | 100 | Plus |
CG32971-RB | 810 | CG32971-RB | 286..722 | 15..451 | 2185 | 100 | Plus |
CG32971-RA | 731 | CG32971-RA | 207..643 | 15..451 | 2185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277914 | 15..451 | 2185 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:53:42 has no hits.
BO18443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:00 Download gff for
BO18443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-PA | 1..438 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:37 Download gff for
BO18443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 15..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:08 Download gff for
BO18443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 15..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:08 Download gff for
BO18443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277478..14277919 | 15..459 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:37 Download gff for
BO18443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277478..14277919 | 15..459 | 99 | | Plus |
BO18443.complete Sequence
469 bp assembled on 2006-10-11
GenBank Submission: FJ634416
> BO18443.complete
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TGCAAGCTTTCTAGACCAT
BO18443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 438 | CG32971-PC | 1..435 | 17..451 | 2175 | 100 | Plus |
CG32971-RB | 438 | CG32971-PB | 1..435 | 17..451 | 2175 | 100 | Plus |
CG32971-RA | 438 | CG32971-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..661 | 15..451 | 2185 | 100 | Plus |
CG32971-RB | 810 | CG32971-RB | 286..722 | 15..451 | 2185 | 100 | Plus |
CG32971-RA | 731 | CG32971-RA | 207..643 | 15..451 | 2185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277914 | 15..451 | 2185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:57:11 has no hits.
BO18443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:37 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RC | 1..438 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:31 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RB | 312..753 | 15..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:18 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 209..643 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:38 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RB | 312..753 | 15..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:56 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 209..643 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:56 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277480..14277914 | 17..453 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:18 Download gff for
BO18443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277480..14277914 | 17..453 | 99 | | Plus |
BO18443.pep Sequence
Translation from 16 to 469
> BO18443.pep
MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQE
LNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAM
HAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLVASFLD
H
BO18443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PC | 145 | CG32971-PC | 1..145 | 1..145 | 727 | 100 | Plus |
CG32971-PB | 145 | CG32971-PB | 1..145 | 1..145 | 727 | 100 | Plus |
CG32971-PA | 145 | CG32971-PA | 1..145 | 1..145 | 727 | 100 | Plus |
MED22-PA | 143 | CG3034-PA | 15..138 | 7..130 | 277 | 46.8 | Plus |