Clone Sequence Records
BO18446.5prime Sequence
381 bp (381 high quality bases) assembled on 2006-10-13
> BO18446.5prime
GAAGTTATCACCTCGACATGAAGTGCATCATATCCATCGTTGTGATCTCC
ATGATCTTCGGTTTAAGCCTGATCCAAGCAGCACCCATCGCTAAGGATGC
CCAGAATCCAGGATTCGTTTCGGCCACGGATATTACCGGAGAGCCAGTGC
GCCAGAAGCGATCCAGTGCGGATTACTACCAGGGCGACTATTTCATCTGC
TATCCCAAGAGCGCAGTGTACGGCAAACATGGATACGGTGCAACCAATCG
CAGATCCTACGACTCGGAAGACTATGCGCCCCACTATTTGGCCGACGATC
CATTGGTCGTTCGCCAGGCTCGTGCTGATGCCAGACGCGCCGCCTACACC
GACAGCTTTGGCAAAGCAAGCTTTCTAGACC
BO18446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13215-PA | 351 | CG13215-RA | 1..348 | 18..365 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13215-RA | 621 | CG13215-RA | 95..444 | 16..365 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11239671..11240020 | 365..16 | 1750 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:13:29 has no hits.
BO18446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:02 Download gff for
BO18446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-PA | 1..351 | 18..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:15 Download gff for
BO18446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 95..447 | 16..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:32 Download gff for
BO18446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 95..447 | 16..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:32 Download gff for
BO18446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11239667..11240020 | 16..369 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:15 Download gff for
BO18446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7127172..7127525 | 16..369 | 99 | | Minus |
BO18446.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ634417
> BO18446.complete
GAAGTTATCAGTCGACATGAAGTGCATCATATCCATCGTTGTGATCTCCA
TGATCTTCGGTTTAAGCCTGATCCAAGCAGCACCCATCGCTAAGGATGCC
CAGAATCCAGGATTCGTTTCGGCCACGGATATTACCGGAGAGCCAGTGCG
CCAGAAGCGATCCAGTGCGGATTACTACCAGGGCGACTATTTCATCTGCT
ATCCCAAGAGCGCAGTGTACGGCAAACATGGATACGGTGCAACCAATCGC
AGATCCTACGACTCGGAAGACTATGCGCCCCACTATTTGGCCGACGATCC
ATTGGTCGTTCGCCAGGCTCGTGCTGATGCCAGACGCGCCGCCTACACCG
ACAGCTTTGGCAAAGCAAGCTTTCTAGACCAT
BO18446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13215-RA | 351 | CG13215-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13215-RA | 621 | CG13215-RA | 95..444 | 15..364 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11239671..11240020 | 364..15 | 1750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:57:05 has no hits.
BO18446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:38 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:33 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:16 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 97..444 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:39 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:55 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13215-RA | 97..444 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:55 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11239669..11240018 | 17..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:16 Download gff for
BO18446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7127174..7127523 | 17..366 | 99 | | Minus |
BO18446.pep Sequence
Translation from 16 to 382
> BO18446.pep
MKCIISIVVISMIFGLSLIQAAPIAKDAQNPGFVSATDITGEPVRQKRSS
ADYYQGDYFICYPKSAVYGKHGYGATNRRSYDSEDYAPHYLADDPLVVRQ
ARADARRAAYTDSFGKASFLDH
BO18446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13215-PA | 116 | CG13215-PA | 1..116 | 1..116 | 605 | 100 | Plus |
