Clone BO18452 Report

Search the DGRC for BO18452

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG15198-RA
Protein status:BO18452.pep: validated full length
Sequenced Size:400

Clone Sequence Records

BO18452.5prime Sequence

398 bp (398 high quality bases) assembled on 2006-10-13

> BO18452.5prime
GAAGTTATCAGTCGACATGAAAACCCTCGAGTCCGACGACAAACCCTTCA
ATCCCTTCTACATTGGCCCACATCCCAGCAAGGCGTGTGCCATTCCCGAG
ATTCCCGGCCAGCAATGCTCACCCAACTGTCAGCCAACTACTACGACCAC
CAATGGTTCTCCAACGGATGCAACGGATCCCAACAGTTTGCCCAGCGGAG
CTGCGGGCGGCATGGTAATCGTGGCCAACATATATAGCACCGTCGAGGTC
CTGGCCGCCGCCGCTCGTATGGGCGGAGCAGCGGGCACTGGAGGGGATCA
GGGTGCGTCGTCTTCCAACAACACCACATGCAAGCCGTATCCCTGCATGG
AGGGCGCTCGCATCGATGGTCCTGGCTGTGGTGCAAGCTTTCTAGACC

BO18452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 369 CG15198-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..539 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248774 16..382 1835 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:43:31 has no hits.

BO18452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:08 Download gff for BO18452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:02 Download gff for BO18452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..539 9..382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:55 Download gff for BO18452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..539 9..382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:55 Download gff for BO18452.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11248402..11248774 9..382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:02 Download gff for BO18452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142435..11142807 9..382 99   Plus

BO18452.3prime Sequence

398 bp (398 high quality bases) assembled on 2006-10-13

> BO18452.3prime
ATGGTCTAGAAAGCTTGCACCACAGCCAGGACCATCGATGCGAGCGCCCT
CCATGCAGGGATACGGCTTGCATGTGGTGTTGTTGGAAGACGACGCACCC
TGATCCCCTCCAGTGCCCGCTGCTCCGCCCATACGAGCGGCGGCGGCCAG
GACCTCGACGGTGCTATATATGTTGGCCACGATTACCATGCCGCCCGCAG
CTCCGCTGGGCAAACTGTTGGGATCCGTTGCATCCGTTGGAGAACCATTG
GTGGTCGTAGTAGTTGGCTGACAGTTGGGTGAGCATTGCTGGCCGGGAAT
CTCGGGAATGGCACACGCCTTGCTGGGATGTGGGCCAATGTAGAAGGGAT
TGAAGGGTTTGTCGTCGGACTCGAGGGTTTTCATGTCGACTGATAACT

BO18452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 369 CG15198-RA 1..366 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..539 385..19 1835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248774 385..19 1835 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:39 has no hits.

BO18452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:08 Download gff for BO18452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:30 Download gff for BO18452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..539 19..392 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:36 Download gff for BO18452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..539 19..392 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:36 Download gff for BO18452.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11248402..11248774 19..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:30 Download gff for BO18452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142435..11142807 19..392 99   Minus

BO18452.complete Sequence

400 bp assembled on 2006-10-11

GenBank Submission: FJ634419

> BO18452.complete
GAAGTTATCAGTCGACATGAAAACCCTCGAGTCCGACGACAAACCCTTCA
ATCCCTTCTACATTGGCCCACATCCCAGCAAGGCGTGTGCCATTCCCGAG
ATTCCCGGCCAGCAATGCTCACCCAACTGTCAGCCAACTACTACGACCAC
CAATGGTTCTCCAACGGATGCAACGGATCCCAACAGTTTGCCCAGCGGAG
CTGCGGGCGGCATGGTAATCGTGGCCAACATATATAGCACCGTCGAGGTC
CTGGCCGCCGCCGCTCGTATGGGCGGAGCAGCGGGCACTGGAGGGGATCA
GGGTGCGTCGTCTTCCAACAACACCACATGCAAGCCGTATCCCTGCATGG
AGGGCGCTCGCATCGATGGTCCTGGCTGTGGTGCAAGCTTTCTAGACCAT

BO18452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 369 CG15198-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..539 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248774 16..382 1835 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:14:06 has no hits.

BO18452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:26 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:15 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:44 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 174..539 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:26 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:28 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 174..539 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:28 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
X 11248409..11248774 17..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:44 Download gff for BO18452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142442..11142807 17..384 99   Plus

BO18452.pep Sequence

Translation from 16 to 400

> BO18452.pep
MKTLESDDKPFNPFYIGPHPSKACAIPEIPGQQCSPNCQPTTTTTNGSPT
DATDPNSLPSGAAGGMVIVANIYSTVEVLAAAARMGGAAGTGGDQGASSS
NNTTCKPYPCMEGARIDGPGCGASFLDH

BO18452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 122 CG15198-PA 1..122 1..122 665 100 Plus