Clone Sequence Records
BO18455.3prime Sequence
393 bp (389 high quality bases) assembled on 2006-10-13
> BO18455.3prime
ATGGTCTAGAAAGCTTGCGCAGCAACAGAAACCGGAGGAGCTATTCTTCG
CGGGTTCGGGATCTTCGGATATTGTGTTTGCCGTCGGCTTTGCTGCACCA
TTGGACGTTGGCTGCACTTGAATGGGTGCAGCTGAGTTGATTTCTCCGAT
TTTGTAGTTCTTTAGATCCTTTTCTGCGTCGGAGGAATGGCCTGCCTGCT
TGAAGGCCTTGGTGGCATCCTTGCCGCCATATTCGAGTAGTGCTTCACTG
CCGCCAGGATGCTCGCCGAGGAACTTGGTTACATCGTACACGTTCCCCTT
GATGATCAGCCAGCAGGGTTTGCCATTCTTGCCGTTCTGCTGGGCCACCT
CCGAGAGTTCGTACAACTGTGACATGTCGACTGATAACTTCGT
BO18455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 360 | CG5157-RA | 1..357 | 375..19 | 1785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1175 | 375..19 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136705..16137061 | 19..375 | 1785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:36:30 has no hits.
BO18455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:10 Download gff for
BO18455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-PA | 1..360 | 18..375 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:24 Download gff for
BO18455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1175 | 19..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:33 Download gff for
BO18455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1175 | 19..385 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:33 Download gff for
BO18455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136705..16137065 | 19..381 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:24 Download gff for
BO18455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129805..16130165 | 19..381 | 98 | <- | Plus |
BO18455.5prime Sequence
389 bp (389 high quality bases) assembled on 2006-10-13
> BO18455.5prime
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCGCAAGCTTTCTAGACC
BO18455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 360 | CG5157-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1175 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136705..16137061 | 373..17 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:21:11 has no hits.
BO18455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:10 Download gff for
BO18455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-PA | 1..360 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:59 Download gff for
BO18455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1175 | 7..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:10 Download gff for
BO18455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1175 | 7..373 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:10 Download gff for
BO18455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136705..16137065 | 11..373 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:59 Download gff for
BO18455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129805..16130165 | 11..373 | 98 | <- | Minus |
BO18455.complete Sequence
391 bp assembled on 2006-10-11
GenBank Submission: FJ634420
> BO18455.complete
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCGCAAGCTTTCTAGACCAT
BO18455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 360 | CG5157-PA | 1..357 | 17..373 | 1785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1175 | 17..373 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136705..16137061 | 373..17 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:02:24 has no hits.
BO18455.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:27 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 1..360 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:16 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1175 | 7..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:55 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 819..1175 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:27 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 1..360 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:24 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 819..1175 | 17..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:24 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136703..16137061 | 17..375 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:55 Download gff for
BO18455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129803..16130161 | 17..375 | 99 | | Minus |
BO18455.pep Sequence
Translation from 16 to 391
> BO18455.pep
MSQLYELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEYG
GKDATKAFKQAGHSSDAEKDLKNYKIGEINSAAPIQVQPTSNGAAKPTAN
TISEDPEPAKNSSSGFCCCASFLDH
BO18455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 119 | CG5157-PA | 1..119 | 1..119 | 633 | 100 | Plus |
Cyt-b5-PB | 134 | CG2140-PB | 6..110 | 2..112 | 216 | 42.3 | Plus |
CG3566-PD | 106 | CG3566-PD | 1..99 | 1..97 | 201 | 45.1 | Plus |
CG3566-PB | 117 | CG3566-PB | 1..89 | 1..91 | 192 | 45.1 | Plus |
CG3566-PC | 89 | CG3566-PC | 1..80 | 1..82 | 191 | 47.6 | Plus |