Clone BO18455 Report

Search the DGRC for BO18455

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG5157-RA
Protein status:BO18455.pep: validated full length
Sequenced Size:391

Clone Sequence Records

BO18455.3prime Sequence

393 bp (389 high quality bases) assembled on 2006-10-13

> BO18455.3prime
ATGGTCTAGAAAGCTTGCGCAGCAACAGAAACCGGAGGAGCTATTCTTCG
CGGGTTCGGGATCTTCGGATATTGTGTTTGCCGTCGGCTTTGCTGCACCA
TTGGACGTTGGCTGCACTTGAATGGGTGCAGCTGAGTTGATTTCTCCGAT
TTTGTAGTTCTTTAGATCCTTTTCTGCGTCGGAGGAATGGCCTGCCTGCT
TGAAGGCCTTGGTGGCATCCTTGCCGCCATATTCGAGTAGTGCTTCACTG
CCGCCAGGATGCTCGCCGAGGAACTTGGTTACATCGTACACGTTCCCCTT
GATGATCAGCCAGCAGGGTTTGCCATTCTTGCCGTTCTGCTGGGCCACCT
CCGAGAGTTCGTACAACTGTGACATGTCGACTGATAACTTCGT

BO18455.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 360 CG5157-RA 1..357 375..19 1785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1175 375..19 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136705..16137061 19..375 1785 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:36:30 has no hits.

BO18455.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:10 Download gff for BO18455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-PA 1..360 18..375 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:24 Download gff for BO18455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1175 19..385 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:33 Download gff for BO18455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1175 19..385 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:33 Download gff for BO18455.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16136705..16137065 19..381 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:24 Download gff for BO18455.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129805..16130165 19..381 98 <- Plus

BO18455.5prime Sequence

389 bp (389 high quality bases) assembled on 2006-10-13

> BO18455.5prime
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCGCAAGCTTTCTAGACC

BO18455.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 360 CG5157-RA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1175 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136705..16137061 373..17 1785 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:21:11 has no hits.

BO18455.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:10 Download gff for BO18455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-PA 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:12:59 Download gff for BO18455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1175 7..373 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:10 Download gff for BO18455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1175 7..373 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:10 Download gff for BO18455.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16136705..16137065 11..373 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:12:59 Download gff for BO18455.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129805..16130165 11..373 98 <- Minus

BO18455.complete Sequence

391 bp assembled on 2006-10-11

GenBank Submission: FJ634420

> BO18455.complete
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCGCAAGCTTTCTAGACCAT

BO18455.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 360 CG5157-PA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1175 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136705..16137061 373..17 1785 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:02:24 has no hits.

BO18455.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:27 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:16 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1175 7..373 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:55 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 819..1175 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:27 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:24 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 819..1175 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:24 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16136703..16137061 17..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:55 Download gff for BO18455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129803..16130161 17..375 99   Minus

BO18455.pep Sequence

Translation from 16 to 391

> BO18455.pep
MSQLYELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEYG
GKDATKAFKQAGHSSDAEKDLKNYKIGEINSAAPIQVQPTSNGAAKPTAN
TISEDPEPAKNSSSGFCCCASFLDH

BO18455.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 119 CG5157-PA 1..119 1..119 633 100 Plus
Cyt-b5-PB 134 CG2140-PB 6..110 2..112 216 42.3 Plus
CG3566-PD 106 CG3566-PD 1..99 1..97 201 45.1 Plus
CG3566-PB 117 CG3566-PB 1..89 1..91 192 45.1 Plus
CG3566-PC 89 CG3566-PC 1..80 1..82 191 47.6 Plus