Clone BO18456 Report

Search the DGRC for BO18456

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG7423-RA
Protein status:BO18456.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO18456.3prime Sequence

404 bp (404 high quality bases) assembled on 2006-10-13

> BO18456.3prime
ATGGTCTAGAAAGCTTGCGTCCCGCGCCAGGAGCCGTCTAATGTCCTCCT
GCTCGGCGGCCTCCGCGTAGCTCTGCCCCTCGGGCGTGCGCTCCGTGCGG
CTGGCTCCCATCCGGAGCAGGAACTCGACGCAGCGTGTATGCCCCTCCCA
TATGGCCGCCAGGAGCGGTGTGATGCCGTACTTGTCCTTCCTGTCCACCT
CCGCGCCGATCCGCACAAAGAACTCCAGCAGCTTCAGCTGGCCAAAGTCG
GCGGCGTAGTGCAAGGGGAACCGGACGCCCATCTGATCGTTCACATTAAG
CGATCCGGCTAGGAAAATTCGCTCCACCTCGTCGTACACGCCGTTCTTGA
TTGTCCAGATGATGTCCTCGATTTTGTGTCCATCGCCCATGTCGACTGAT
AACT

BO18456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-PA 375 CG7423-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-RA 682 CG7423-RA 112..483 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19082808..19083179 19..390 1860 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:45 has no hits.

BO18456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:11 Download gff for BO18456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-PA 1..375 16..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:35 Download gff for BO18456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 19..396 19..400 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:57 Download gff for BO18456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 106..483 19..400 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:57 Download gff for BO18456.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19082808..19083185 19..400 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:35 Download gff for BO18456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18976841..18977218 19..400 98   Plus

BO18456.5prime Sequence

404 bp (404 high quality bases) assembled on 2006-10-13

> BO18456.5prime
GAAGTTATCAGTCGACATGGGCGATGGACACAAAATCGAGGACATCATCT
GGACAATCAAGAACGGCGTGTACGACGAGGTGGAGCGAATTTTCCTAGCC
GGATCGCTTAATGTGAACGATCAGATGGGCGTCCGGTTCCCCTTGCACTA
CGCCGCCGACTTTGGCCAGCTGAAGCTGCTGGAGTTCTTTGTGCGGATCG
GCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCTGGCG
GCCATATGGGAGGGGCATACACGCTGCGTCGAGTTCCTGCTCCGGATGGG
AGCCAGCCGCACGGAGCGCACGCCCGAGGGGCAGAGCTACGCGGAGGCCG
CCGAGCAGGAGGACATTAGACGGCTCCTGGCGCGGGACGCAAGCTTTCTA
GACC

BO18456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-PA 375 CG7423-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-RA 682 CG7423-RA 112..483 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19082808..19083179 388..17 1860 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:56:31 has no hits.

BO18456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:12 Download gff for BO18456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-PA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:26 Download gff for BO18456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 19..396 7..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:53 Download gff for BO18456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 106..483 7..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:53 Download gff for BO18456.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19082808..19083185 7..388 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:26 Download gff for BO18456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18976841..18977218 7..388 98   Minus

BO18456.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ634421

> BO18456.complete
GAAGTTATCAGTCGACATGGGCGATGGACACAAAATCGAGGACATCATCT
GGACAATCAAGAACGGCGTGTACGACGAGGTGGAGCGAATTTTCCTAGCC
GGATCGCTTAATGTGAACGATCAGATGGGCGTCCGGTTCCCCTTGCACTA
CGCCGCCGACTTTGGCCAGCTGAAGCTGCTGGAGTTCTTTGTGCGGATCG
GCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCTGGCG
GCCATATGGGAGGGGCATACACGCTGCGTCGAGTTCCTGCTCCGGATGGG
AGCCAGCCGCACGGAGCGCACGCCCGAGGGGCAGAGCTACGCGGAGGCCG
CCGAGCAGGAGGACATTAGACGGCTCCTGGCGCGGGACGCAAGCTTTCTA
GACCAT

BO18456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-RA 375 CG7423-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-RA 682 CG7423-RA 112..483 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19082808..19083179 388..17 1860 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:45:53 has no hits.

BO18456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:28 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:18 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:11 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 25..396 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:28 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:59 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
CG7423-RA 112..483 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:59 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
X 19082805..19083179 17..390 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:11 Download gff for BO18456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18976838..18977212 17..390 99   Minus

BO18456.pep Sequence

Translation from 16 to 406

> BO18456.pep
MGDGHKIEDIIWTIKNGVYDEVERIFLAGSLNVNDQMGVRFPLHYAADFG
QLKLLEFFVRIGAEVDRKDKYGITPLLAAIWEGHTRCVEFLLRMGASRTE
RTPEGQSYAEAAEQEDIRRLLARDASFLDH

BO18456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7423-PA 124 CG7423-PA 1..124 1..124 646 100 Plus
CG31715-PA 121 CG31715-PA 7..121 8..122 397 61.7 Plus
CG31715-PB 119 CG31715-PB 7..119 8..122 374 60 Plus