Clone Sequence Records
BO18456.3prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO18456.3prime
ATGGTCTAGAAAGCTTGCGTCCCGCGCCAGGAGCCGTCTAATGTCCTCCT
GCTCGGCGGCCTCCGCGTAGCTCTGCCCCTCGGGCGTGCGCTCCGTGCGG
CTGGCTCCCATCCGGAGCAGGAACTCGACGCAGCGTGTATGCCCCTCCCA
TATGGCCGCCAGGAGCGGTGTGATGCCGTACTTGTCCTTCCTGTCCACCT
CCGCGCCGATCCGCACAAAGAACTCCAGCAGCTTCAGCTGGCCAAAGTCG
GCGGCGTAGTGCAAGGGGAACCGGACGCCCATCTGATCGTTCACATTAAG
CGATCCGGCTAGGAAAATTCGCTCCACCTCGTCGTACACGCCGTTCTTGA
TTGTCCAGATGATGTCCTCGATTTTGTGTCCATCGCCCATGTCGACTGAT
AACT
BO18456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-PA | 375 | CG7423-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-RA | 682 | CG7423-RA | 112..483 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19082808..19083179 | 19..390 | 1860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:45 has no hits.
BO18456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:11 Download gff for
BO18456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-PA | 1..375 | 16..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:35 Download gff for
BO18456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 19..396 | 19..400 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:18:57 Download gff for
BO18456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 106..483 | 19..400 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:18:57 Download gff for
BO18456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19082808..19083185 | 19..400 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:35 Download gff for
BO18456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18976841..18977218 | 19..400 | 98 | | Plus |
BO18456.5prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO18456.5prime
GAAGTTATCAGTCGACATGGGCGATGGACACAAAATCGAGGACATCATCT
GGACAATCAAGAACGGCGTGTACGACGAGGTGGAGCGAATTTTCCTAGCC
GGATCGCTTAATGTGAACGATCAGATGGGCGTCCGGTTCCCCTTGCACTA
CGCCGCCGACTTTGGCCAGCTGAAGCTGCTGGAGTTCTTTGTGCGGATCG
GCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCTGGCG
GCCATATGGGAGGGGCATACACGCTGCGTCGAGTTCCTGCTCCGGATGGG
AGCCAGCCGCACGGAGCGCACGCCCGAGGGGCAGAGCTACGCGGAGGCCG
CCGAGCAGGAGGACATTAGACGGCTCCTGGCGCGGGACGCAAGCTTTCTA
GACC
BO18456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-PA | 375 | CG7423-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-RA | 682 | CG7423-RA | 112..483 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19082808..19083179 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:31 has no hits.
BO18456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:12 Download gff for
BO18456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-PA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:26 Download gff for
BO18456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 19..396 | 7..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:53 Download gff for
BO18456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 106..483 | 7..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:53 Download gff for
BO18456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19082808..19083185 | 7..388 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:26 Download gff for
BO18456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18976841..18977218 | 7..388 | 98 | | Minus |
BO18456.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ634421
> BO18456.complete
GAAGTTATCAGTCGACATGGGCGATGGACACAAAATCGAGGACATCATCT
GGACAATCAAGAACGGCGTGTACGACGAGGTGGAGCGAATTTTCCTAGCC
GGATCGCTTAATGTGAACGATCAGATGGGCGTCCGGTTCCCCTTGCACTA
CGCCGCCGACTTTGGCCAGCTGAAGCTGCTGGAGTTCTTTGTGCGGATCG
GCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCTGGCG
GCCATATGGGAGGGGCATACACGCTGCGTCGAGTTCCTGCTCCGGATGGG
AGCCAGCCGCACGGAGCGCACGCCCGAGGGGCAGAGCTACGCGGAGGCCG
CCGAGCAGGAGGACATTAGACGGCTCCTGGCGCGGGACGCAAGCTTTCTA
GACCAT
BO18456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-RA | 375 | CG7423-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-RA | 682 | CG7423-RA | 112..483 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19082808..19083179 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:45:53 has no hits.
BO18456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:28 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:18 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:11 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 25..396 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:28 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:59 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7423-RA | 112..483 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:59 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19082805..19083179 | 17..390 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:11 Download gff for
BO18456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18976838..18977212 | 17..390 | 99 | | Minus |
BO18456.pep Sequence
Translation from 16 to 406
> BO18456.pep
MGDGHKIEDIIWTIKNGVYDEVERIFLAGSLNVNDQMGVRFPLHYAADFG
QLKLLEFFVRIGAEVDRKDKYGITPLLAAIWEGHTRCVEFLLRMGASRTE
RTPEGQSYAEAAEQEDIRRLLARDASFLDH
BO18456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7423-PA | 124 | CG7423-PA | 1..124 | 1..124 | 646 | 100 | Plus |
CG31715-PA | 121 | CG31715-PA | 7..121 | 8..122 | 397 | 61.7 | Plus |
CG31715-PB | 119 | CG31715-PB | 7..119 | 8..122 | 374 | 60 | Plus |