Clone Sequence Records
BO18457.3prime Sequence
626 bp (626 high quality bases) assembled on 2006-10-13
> BO18457.3prime
ATGGTCTAGAAAGCTTGCGTTATAGCCACGATAGGAACTCGAACCATAGG
AACGATCTCTCGAGATGGGCAGGCCCAAACGATCTGTATCATCGTAGTAG
CCATATCCACGATTCCGCTGACCCTGATAATCCCGCTGCCAATAGCCTGA
GTATTGCCTAAAACCTCCATTACCTCCGTAGCCACCATATCCGCCGTATC
CGCCTCCTTGGCTACCCAGAATGTTCGTGGTCGGATAACTGCTAGTGGAA
TAATAGTTATAGCCTTGAGTTGGGTAGTAGCCGGAGGAACCGTAGCTCCC
CTGGTTTGGGTAGTAGGTGGTAGATCCATATCCCGAGCCGGGATAGTATC
CCGATGAGCCGTAGTAGTTCGTATTGTAGCCGGGATAGTAGGGGTTGCTC
GGACGATTATAGTTGTAGCCATAGTTCGGATACCCAGAGCCAGTTCCAAA
GAGATTTAACAACTTGGCCGAAGTCTCGGCGGTTGCCAAATCACTTGTCG
TCGTCCTGGTCGCAGTTGCCACCTGATTTTCTGGGAGGGCGGCACTCCAG
GCTCCAGTCACGGCCAACATTAGGGTAAATAGCTTGATGAACATGACACT
GGATTTAACCATGTCGACTGATAACT
BO18457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 597 | CG13285-RA | 1..594 | 612..19 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..696 | 612..19 | 2970 | 100 | Minus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 612..173 | 2200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534828..5535270 | 19..461 | 2215 | 100 | Plus |
3L | 28110227 | 3L | 5535437..5535543 | 462..568 | 535 | 100 | Plus |
3L | 28110227 | 3L | 5535613..5535657 | 568..612 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:21:58 has no hits.
BO18457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for
BO18457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:09 Download gff for
BO18457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:17 Download gff for
BO18457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 15..612 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:17 Download gff for
BO18457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5535437..5535542 | 462..567 | 100 | <- | Plus |
3L | 5535613..5535657 | 568..612 | 100 | | Plus |
3L | 5534825..5535270 | 15..461 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:09 Download gff for
BO18457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5527925..5528370 | 15..461 | 99 | <- | Plus |
arm_3L | 5528537..5528642 | 462..567 | 100 | <- | Plus |
arm_3L | 5528713..5528757 | 568..612 | 100 | | Plus |
BO18457.5prime Sequence
626 bp (626 high quality bases) assembled on 2006-10-13
> BO18457.5prime
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACGCAAGCTTTCTAGACC
BO18457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 597 | CG13285-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..696 | 17..610 | 2970 | 100 | Plus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534828..5535270 | 610..168 | 2215 | 100 | Minus |
3L | 28110227 | 3L | 5535437..5535543 | 167..61 | 535 | 100 | Minus |
3L | 28110227 | 3L | 5535613..5535657 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:56:48 has no hits.
BO18457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for
BO18457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-PA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:30 Download gff for
BO18457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:21 Download gff for
BO18457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:21 Download gff for
BO18457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5535437..5535542 | 62..167 | 100 | <- | Minus |
3L | 5535613..5535657 | 17..61 | 100 | | Minus |
3L | 5534825..5535270 | 168..614 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:30 Download gff for
BO18457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5527925..5528370 | 168..614 | 99 | <- | Minus |
arm_3L | 5528537..5528642 | 62..167 | 100 | <- | Minus |
arm_3L | 5528713..5528757 | 17..61 | 100 | | Minus |
BO18457.complete Sequence
628 bp assembled on 2006-10-11
GenBank Submission: FJ634422
> BO18457.complete
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACGCAAGCTTTCTAGACCAT
BO18457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 597 | CG13285-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG13285-RB | 465 | CG13285-PB | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..696 | 17..610 | 2970 | 100 | Plus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534828..5535270 | 610..168 | 2215 | 100 | Minus |
3L | 28110227 | 3L | 5535437..5535543 | 167..61 | 535 | 100 | Minus |
3L | 28110227 | 3L | 5535613..5535657 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:07:18 has no hits.
BO18457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:49 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:07 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:52 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..696 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:49 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:29 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..696 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:29 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5534826..5535270 | 168..612 | 99 | <- | Minus |
3L | 5535437..5535542 | 62..167 | 100 | <- | Minus |
3L | 5535613..5535657 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:52 Download gff for
BO18457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5527926..5528370 | 168..612 | 99 | <- | Minus |
arm_3L | 5528537..5528642 | 62..167 | 100 | <- | Minus |
arm_3L | 5528713..5528757 | 17..61 | 100 | | Minus |
BO18457.pep Sequence
Translation from 16 to 628
> BO18457.pep
MVKSSVMFIKLFTLMLAVTGAWSAALPENQVATATRTTTSDLATAETSAK
LLNLFGTGSGYPNYGYNYNRPSNPYYPGYNTNYYGSSGYYPGSGYGSTTY
YPNQGSYGSSGYYPTQGYNYYSTSSYPTTNILGSQGGGYGGYGGYGGNGG
FRQYSGYWQRDYQGQRNRGYGYYDDTDRLGLPISRDRSYGSSSYRGYNAS
FLDH
BO18457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 198 | CG13285-PA | 1..198 | 1..198 | 1095 | 100 | Plus |
CG13285-PB | 154 | CG13285-PB | 1..147 | 1..147 | 805 | 100 | Plus |
Edg91-PB | 151 | CG7539-PB | 58..149 | 56..151 | 156 | 45.1 | Plus |
Edg91-PA | 159 | CG7539-PA | 66..157 | 56..151 | 156 | 45.1 | Plus |
CG13226-PA | 237 | CG13226-PA | 93..203 | 58..171 | 156 | 37.7 | Plus |