Clone BO18457 Report

Search the DGRC for BO18457

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG13285-RA
Protein status:BO18457.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO18457.3prime Sequence

626 bp (626 high quality bases) assembled on 2006-10-13

> BO18457.3prime
ATGGTCTAGAAAGCTTGCGTTATAGCCACGATAGGAACTCGAACCATAGG
AACGATCTCTCGAGATGGGCAGGCCCAAACGATCTGTATCATCGTAGTAG
CCATATCCACGATTCCGCTGACCCTGATAATCCCGCTGCCAATAGCCTGA
GTATTGCCTAAAACCTCCATTACCTCCGTAGCCACCATATCCGCCGTATC
CGCCTCCTTGGCTACCCAGAATGTTCGTGGTCGGATAACTGCTAGTGGAA
TAATAGTTATAGCCTTGAGTTGGGTAGTAGCCGGAGGAACCGTAGCTCCC
CTGGTTTGGGTAGTAGGTGGTAGATCCATATCCCGAGCCGGGATAGTATC
CCGATGAGCCGTAGTAGTTCGTATTGTAGCCGGGATAGTAGGGGTTGCTC
GGACGATTATAGTTGTAGCCATAGTTCGGATACCCAGAGCCAGTTCCAAA
GAGATTTAACAACTTGGCCGAAGTCTCGGCGGTTGCCAAATCACTTGTCG
TCGTCCTGGTCGCAGTTGCCACCTGATTTTCTGGGAGGGCGGCACTCCAG
GCTCCAGTCACGGCCAACATTAGGGTAAATAGCTTGATGAACATGACACT
GGATTTAACCATGTCGACTGATAACT

BO18457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 597 CG13285-RA 1..594 612..19 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..696 612..19 2970 100 Minus
CG13285-RB 981 CG13285-RB 103..542 612..173 2200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534828..5535270 19..461 2215 100 Plus
3L 28110227 3L 5535437..5535543 462..568 535 100 Plus
3L 28110227 3L 5535613..5535657 568..612 225 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:21:58 has no hits.

BO18457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for BO18457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:09 Download gff for BO18457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 15..612 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:17 Download gff for BO18457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 15..612 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:17 Download gff for BO18457.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5535437..5535542 462..567 100 <- Plus
3L 5535613..5535657 568..612 100   Plus
3L 5534825..5535270 15..461 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:09 Download gff for BO18457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5527925..5528370 15..461 99 <- Plus
arm_3L 5528537..5528642 462..567 100 <- Plus
arm_3L 5528713..5528757 568..612 100   Plus

BO18457.5prime Sequence

626 bp (626 high quality bases) assembled on 2006-10-13

> BO18457.5prime
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACGCAAGCTTTCTAGACC

BO18457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 597 CG13285-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..696 17..610 2970 100 Plus
CG13285-RB 981 CG13285-RB 103..542 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534828..5535270 610..168 2215 100 Minus
3L 28110227 3L 5535437..5535543 167..61 535 100 Minus
3L 28110227 3L 5535613..5535657 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:56:48 has no hits.

BO18457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for BO18457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-PA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:30 Download gff for BO18457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:21 Download gff for BO18457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..614 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:21 Download gff for BO18457.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5535437..5535542 62..167 100 <- Minus
3L 5535613..5535657 17..61 100   Minus
3L 5534825..5535270 168..614 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:30 Download gff for BO18457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5527925..5528370 168..614 99 <- Minus
arm_3L 5528537..5528642 62..167 100 <- Minus
arm_3L 5528713..5528757 17..61 100   Minus

BO18457.complete Sequence

628 bp assembled on 2006-10-11

GenBank Submission: FJ634422

> BO18457.complete
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACGCAAGCTTTCTAGACCAT

BO18457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 597 CG13285-PA 1..594 17..610 2970 100 Plus
CG13285-RB 465 CG13285-PB 1..440 17..456 2200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..696 17..610 2970 100 Plus
CG13285-RB 981 CG13285-RB 103..542 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534828..5535270 610..168 2215 100 Minus
3L 28110227 3L 5535437..5535543 167..61 535 100 Minus
3L 28110227 3L 5535613..5535657 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:07:18 has no hits.

BO18457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:49 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:07 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:52 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..696 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:49 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:29 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..696 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:29 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5534826..5535270 168..612 99 <- Minus
3L 5535437..5535542 62..167 100 <- Minus
3L 5535613..5535657 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:52 Download gff for BO18457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5527926..5528370 168..612 99 <- Minus
arm_3L 5528537..5528642 62..167 100 <- Minus
arm_3L 5528713..5528757 17..61 100   Minus

BO18457.pep Sequence

Translation from 16 to 628

> BO18457.pep
MVKSSVMFIKLFTLMLAVTGAWSAALPENQVATATRTTTSDLATAETSAK
LLNLFGTGSGYPNYGYNYNRPSNPYYPGYNTNYYGSSGYYPGSGYGSTTY
YPNQGSYGSSGYYPTQGYNYYSTSSYPTTNILGSQGGGYGGYGGYGGNGG
FRQYSGYWQRDYQGQRNRGYGYYDDTDRLGLPISRDRSYGSSSYRGYNAS
FLDH

BO18457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 198 CG13285-PA 1..198 1..198 1095 100 Plus
CG13285-PB 154 CG13285-PB 1..147 1..147 805 100 Plus
Edg91-PB 151 CG7539-PB 58..149 56..151 156 45.1 Plus
Edg91-PA 159 CG7539-PA 66..157 56..151 156 45.1 Plus
CG13226-PA 237 CG13226-PA 93..203 58..171 156 37.7 Plus