Clone BO18458 Report

Search the DGRC for BO18458

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG14512-RA
Protein status:BO18458.pep: validated full length
Sequenced Size:547

Clone Sequence Records

BO18458.3prime Sequence

545 bp (545 high quality bases) assembled on 2006-10-13

> BO18458.3prime
ATGGTCTAGAAAGCTTGCATGGGACATCAGCTGATTGATGGCGGAAACGA
ATTTGCTAAGATTTTCCGGTTTCGTTTCATAGGGCTTTAAGGCTTCAAAG
TCCAGAGTAGCTAGCTGGGCATCCACGTCGGTAACTTTGCAGTAATACAG
ATAGTTTTCAGCGGCCAGTTGCTTGGCCAACTCCAGTTGATGATTGTCCA
TGAGCGTGTCATTTATCACAATGAGTCCAGGTTTCTGGTTATTTAGTATA
TCCATGCAAGTTCCGGCTCCCGCATGTCCAATAATTAGGTCTGCGGACTT
GATGTCCTCCGTATTTGGCCGGAAATTGTACTGCTCTATCTGGATTCCGT
AGTTTTTTCTTATCAATTGTATTTCATCGTCTGTTAATGGTTGCGAATTT
CCGTGCTGTATGACGAGTTTGGTGCATTTCCGGTTCTGTAGAGCTTTGAG
TGCGGGTTCCGTGGATGCAGTTGATATTAGAGCATCGAATTTGGTGGTAC
CAACGGTAATGTAAACAGTGTTCAAATGCATGTCGACTGATAACT

BO18458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 516 CG14512-RA 1..513 531..19 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..560 531..19 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138014..29138526 19..531 2565 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:22:22 has no hits.

BO18458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for BO18458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-PA 1..516 16..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:14 Download gff for BO18458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 12..539 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:21 Download gff for BO18458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 12..539 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:21 Download gff for BO18458.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29138009..29138532 12..539 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:14 Download gff for BO18458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963731..24964254 12..539 98   Plus

BO18458.5prime Sequence

545 bp (545 high quality bases) assembled on 2006-10-13

> BO18458.5prime
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATGCAAGCTTTCTAGACC

BO18458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 516 CG14512-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..560 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138014..29138526 529..17 2565 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:10:58 has no hits.

BO18458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:14 Download gff for BO18458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-PA 1..516 17..532 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:43 Download gff for BO18458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..536 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:32 Download gff for BO18458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..536 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:32 Download gff for BO18458.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29138009..29138532 9..536 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:43 Download gff for BO18458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963731..24964254 9..536 98   Minus

BO18458.complete Sequence

547 bp assembled on 2006-10-11

GenBank Submission: FJ634423

> BO18458.complete
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATGCAAGCTTTCTAGACCAT

BO18458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 516 CG14512-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-RA 604 CG14512-RA 48..560 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29138014..29138526 529..17 2565 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:47:20 has no hits.

BO18458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:08 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 1..516 17..532 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:58 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..536 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:48 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 48..560 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:09 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 42..565 9..536 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:39 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
CG14512-RA 48..560 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:39 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29138010..29138526 17..531 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:48 Download gff for BO18458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24963732..24964248 17..531 99   Minus

BO18458.pep Sequence

Translation from 16 to 547

> BO18458.pep
MHLNTVYITVGTTKFDALISTASTEPALKALQNRKCTKLVIQHGNSQPLT
DDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIGHAGAGTCMDILNNQK
PGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTDVDAQLATLDFEALKP
YETKPENLSKFVSAINQLMSHASFLDH

BO18458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14512-PA 171 CG14512-PA 1..171 1..171 881 100 Plus