Clone Sequence Records
BO18458.3prime Sequence
545 bp (545 high quality bases) assembled on 2006-10-13
> BO18458.3prime
ATGGTCTAGAAAGCTTGCATGGGACATCAGCTGATTGATGGCGGAAACGA
ATTTGCTAAGATTTTCCGGTTTCGTTTCATAGGGCTTTAAGGCTTCAAAG
TCCAGAGTAGCTAGCTGGGCATCCACGTCGGTAACTTTGCAGTAATACAG
ATAGTTTTCAGCGGCCAGTTGCTTGGCCAACTCCAGTTGATGATTGTCCA
TGAGCGTGTCATTTATCACAATGAGTCCAGGTTTCTGGTTATTTAGTATA
TCCATGCAAGTTCCGGCTCCCGCATGTCCAATAATTAGGTCTGCGGACTT
GATGTCCTCCGTATTTGGCCGGAAATTGTACTGCTCTATCTGGATTCCGT
AGTTTTTTCTTATCAATTGTATTTCATCGTCTGTTAATGGTTGCGAATTT
CCGTGCTGTATGACGAGTTTGGTGCATTTCCGGTTCTGTAGAGCTTTGAG
TGCGGGTTCCGTGGATGCAGTTGATATTAGAGCATCGAATTTGGTGGTAC
CAACGGTAATGTAAACAGTGTTCAAATGCATGTCGACTGATAACT
BO18458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 516 | CG14512-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..560 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138014..29138526 | 19..531 | 2565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:22:22 has no hits.
BO18458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:13 Download gff for
BO18458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-PA | 1..516 | 16..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:14 Download gff for
BO18458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 12..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:21 Download gff for
BO18458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 12..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:21 Download gff for
BO18458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138009..29138532 | 12..539 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:14 Download gff for
BO18458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963731..24964254 | 12..539 | 98 | | Plus |
BO18458.5prime Sequence
545 bp (545 high quality bases) assembled on 2006-10-13
> BO18458.5prime
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATGCAAGCTTTCTAGACC
BO18458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 516 | CG14512-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..560 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138014..29138526 | 529..17 | 2565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:58 has no hits.
BO18458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:14 Download gff for
BO18458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-PA | 1..516 | 17..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:43 Download gff for
BO18458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..536 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:19:32 Download gff for
BO18458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..536 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:19:32 Download gff for
BO18458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138009..29138532 | 9..536 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:43 Download gff for
BO18458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963731..24964254 | 9..536 | 98 | | Minus |
BO18458.complete Sequence
547 bp assembled on 2006-10-11
GenBank Submission: FJ634423
> BO18458.complete
GAAGTTATCAGTCGACATGCATTTGAACACTGTTTACATTACCGTTGGTA
CCACCAAATTCGATGCTCTAATATCAACTGCATCCACGGAACCCGCACTC
AAAGCTCTACAGAACCGGAAATGCACCAAACTCGTCATACAGCACGGAAA
TTCGCAACCATTAACAGACGATGAAATACAATTGATAAGAAAAAACTACG
GAATCCAGATAGAGCAGTACAATTTCCGGCCAAATACGGAGGACATCAAG
TCCGCAGACCTAATTATTGGACATGCGGGAGCCGGAACTTGCATGGATAT
ACTAAATAACCAGAAACCTGGACTCATTGTGATAAATGACACGCTCATGG
ACAATCATCAACTGGAGTTGGCCAAGCAACTGGCCGCTGAAAACTATCTG
TATTACTGCAAAGTTACCGACGTGGATGCCCAGCTAGCTACTCTGGACTT
TGAAGCCTTAAAGCCCTATGAAACGAAACCGGAAAATCTTAGCAAATTCG
TTTCCGCCATCAATCAGCTGATGTCCCATGCAAGCTTTCTAGACCAT
BO18458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 516 | CG14512-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-RA | 604 | CG14512-RA | 48..560 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29138014..29138526 | 529..17 | 2565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:20 has no hits.
BO18458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:08 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 1..516 | 17..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:58 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..536 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:48 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 48..560 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:09 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 42..565 | 9..536 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:39 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14512-RA | 48..560 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:39 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29138010..29138526 | 17..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:48 Download gff for
BO18458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24963732..24964248 | 17..531 | 99 | | Minus |
BO18458.pep Sequence
Translation from 16 to 547
> BO18458.pep
MHLNTVYITVGTTKFDALISTASTEPALKALQNRKCTKLVIQHGNSQPLT
DDEIQLIRKNYGIQIEQYNFRPNTEDIKSADLIIGHAGAGTCMDILNNQK
PGLIVINDTLMDNHQLELAKQLAAENYLYYCKVTDVDAQLATLDFEALKP
YETKPENLSKFVSAINQLMSHASFLDH
BO18458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14512-PA | 171 | CG14512-PA | 1..171 | 1..171 | 881 | 100 | Plus |