Clone Sequence Records
BO18459.3prime Sequence
569 bp (569 high quality bases) assembled on 2006-10-13
> BO18459.3prime
ATGGTCTAGAAAGCTTGCCAAAAGGCCGCGTTGGCGGAAGATCTCGTCCA
GCTTGAGCTCCAGGTTGGCGTTGGTTCCTCGCAGATTGTCCACCACCTTT
TTGGCCCAAACGAAGTACTGATCACGACGCTCCTGTGTCCACCCTGTCGG
TGTGTTGACTTGCAGATCCCTTAGGTTATCCAATTTGTCAGCCAGCTTTA
TGAGCTTTGCTCTGCAGCTGCTTTTGGCTGCATTTTCTATTTGCAGGCGT
TTTCTCTCCTGTTTCTCCAGGGACTTGTCGTCCGTCACCTCCCTCACTAG
TCCACAAACATCCGGTCCAAAGAGTTTCTCAACATCCTCGAAAGATGCGT
CCGTATCCTCCACGACATCGTGCAGAAGTGCAGCCATTAGGACTCCCTCA
TCTGTGATGCAGGCCTCCACGGAGAGAATAGTGCTCACATTGATCACATG
GTTCACATAGGGGGTTTCCTGAGGATCCTTGCGACGTTGCTGCCGGTGCT
TAAAAGCTGCATATTGGAGGCACTCCATGAATTTGGCAGATGGATATGTG
GCCATGTCGACTGATAACT
BO18459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11900-PA | 540 | CG11900-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..603 | 555..19 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 132..481 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 29201795..29201911 | 19..135 | 585 | 100 | Plus |
3R | 32079331 | 3R | 29202381..29202459 | 477..555 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:50:25 has no hits.
BO18459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:14 Download gff for
BO18459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:05 Download gff for
BO18459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..606 | 15..563 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:09 Download gff for
BO18459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..606 | 15..563 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:09 Download gff for
BO18459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29201970..29202314 | 133..477 | 100 | <- | Plus |
3R | 29202382..29202464 | 478..563 | 95 | | Plus |
3R | 29201791..29201908 | 15..132 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:05 Download gff for
BO18459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25027513..25027630 | 15..132 | 98 | <- | Plus |
arm_3R | 25027692..25028036 | 133..477 | 100 | <- | Plus |
arm_3R | 25028104..25028186 | 478..563 | 95 | | Plus |
BO18459.5prime Sequence
569 bp (569 high quality bases) assembled on 2006-10-13
> BO18459.5prime
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGGCAAGCTTTCTAGACC
BO18459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11900-PA | 540 | CG11900-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..603 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 440..91 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 29201795..29201911 | 553..437 | 585 | 100 | Minus |
3R | 32079331 | 3R | 29202381..29202459 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:02:20 has no hits.
BO18459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:15 Download gff for
BO18459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:12 Download gff for
BO18459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..606 | 9..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:00 Download gff for
BO18459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 62..606 | 9..557 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:00 Download gff for
BO18459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29202382..29202464 | 9..94 | 95 | | Minus |
3R | 29201791..29201908 | 440..557 | 98 | <- | Minus |
3R | 29201970..29202314 | 95..439 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:12 Download gff for
BO18459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25028104..25028186 | 9..94 | 95 | | Minus |
arm_3R | 25027513..25027630 | 440..557 | 98 | <- | Minus |
arm_3R | 25027692..25028036 | 95..439 | 100 | <- | Minus |
BO18459.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ634424
> BO18459.complete
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGGCAAGCTTTCTAGACCAT
BO18459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 540 | CG11900-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-RA | 642 | CG11900-RA | 67..603 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29201969..29202318 | 440..91 | 1750 | 100 | Minus |
3R | 32079331 | 3R | 29201795..29201911 | 553..437 | 585 | 100 | Minus |
3R | 32079331 | 3R | 29202381..29202459 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:05 has no hits.
BO18459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:10 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:24 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 62..606 | 9..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:31 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 67..603 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:10 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11900-RA | 62..606 | 9..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:42 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mesh1-RA | 67..603 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:42 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29201793..29201908 | 440..555 | 98 | <- | Minus |
3R | 29201970..29202314 | 95..439 | 100 | <- | Minus |
3R | 29202382..29202459 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:31 Download gff for
BO18459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25027515..25027630 | 440..555 | 98 | <- | Minus |
arm_3R | 25027692..25028036 | 95..439 | 100 | <- | Minus |
arm_3R | 25028104..25028181 | 17..94 | 100 | | Minus |
BO18459.pep Sequence
Translation from 16 to 571
> BO18459.pep
MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI
TDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQE
RKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW
AKKVVDNLRGTNANLELKLDEIFRQRGLLASFLDH
BO18459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mesh1-PA | 179 | CG11900-PA | 1..179 | 1..179 | 923 | 100 | Plus |