Clone BO18459 Report

Search the DGRC for BO18459

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG11900-RA
Protein status:BO18459.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO18459.3prime Sequence

569 bp (569 high quality bases) assembled on 2006-10-13

> BO18459.3prime
ATGGTCTAGAAAGCTTGCCAAAAGGCCGCGTTGGCGGAAGATCTCGTCCA
GCTTGAGCTCCAGGTTGGCGTTGGTTCCTCGCAGATTGTCCACCACCTTT
TTGGCCCAAACGAAGTACTGATCACGACGCTCCTGTGTCCACCCTGTCGG
TGTGTTGACTTGCAGATCCCTTAGGTTATCCAATTTGTCAGCCAGCTTTA
TGAGCTTTGCTCTGCAGCTGCTTTTGGCTGCATTTTCTATTTGCAGGCGT
TTTCTCTCCTGTTTCTCCAGGGACTTGTCGTCCGTCACCTCCCTCACTAG
TCCACAAACATCCGGTCCAAAGAGTTTCTCAACATCCTCGAAAGATGCGT
CCGTATCCTCCACGACATCGTGCAGAAGTGCAGCCATTAGGACTCCCTCA
TCTGTGATGCAGGCCTCCACGGAGAGAATAGTGCTCACATTGATCACATG
GTTCACATAGGGGGTTTCCTGAGGATCCTTGCGACGTTGCTGCCGGTGCT
TAAAAGCTGCATATTGGAGGCACTCCATGAATTTGGCAGATGGATATGTG
GCCATGTCGACTGATAACT

BO18459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11900-PA 540 CG11900-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..603 555..19 2685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 132..481 1750 100 Plus
3R 32079331 3R 29201795..29201911 19..135 585 100 Plus
3R 32079331 3R 29202381..29202459 477..555 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:50:25 has no hits.

BO18459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:14 Download gff for BO18459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11900-PA 1..540 15..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:05 Download gff for BO18459.3prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..606 15..563 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:09 Download gff for BO18459.3prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..606 15..563 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:09 Download gff for BO18459.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29201970..29202314 133..477 100 <- Plus
3R 29202382..29202464 478..563 95   Plus
3R 29201791..29201908 15..132 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:05 Download gff for BO18459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25027513..25027630 15..132 98 <- Plus
arm_3R 25027692..25028036 133..477 100 <- Plus
arm_3R 25028104..25028186 478..563 95   Plus

BO18459.5prime Sequence

569 bp (569 high quality bases) assembled on 2006-10-13

> BO18459.5prime
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGGCAAGCTTTCTAGACC

BO18459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11900-PA 540 CG11900-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..603 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 440..91 1750 100 Minus
3R 32079331 3R 29201795..29201911 553..437 585 100 Minus
3R 32079331 3R 29202381..29202459 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:02:20 has no hits.

BO18459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:15 Download gff for BO18459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11900-PA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:12 Download gff for BO18459.5prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..606 9..557 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:00 Download gff for BO18459.5prime
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 62..606 9..557 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:00 Download gff for BO18459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29202382..29202464 9..94 95   Minus
3R 29201791..29201908 440..557 98 <- Minus
3R 29201970..29202314 95..439 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:12 Download gff for BO18459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25028104..25028186 9..94 95   Minus
arm_3R 25027513..25027630 440..557 98 <- Minus
arm_3R 25027692..25028036 95..439 100 <- Minus

BO18459.complete Sequence

571 bp assembled on 2006-10-11

GenBank Submission: FJ634424

> BO18459.complete
GAAGTTATCAGTCGACATGGCCACATATCCATCTGCCAAATTCATGGAGT
GCCTCCAATATGCAGCTTTTAAGCACCGGCAGCAACGTCGCAAGGATCCT
CAGGAAACCCCCTATGTGAACCATGTGATCAATGTGAGCACTATTCTCTC
CGTGGAGGCCTGCATCACAGATGAGGGAGTCCTAATGGCTGCACTTCTGC
ACGATGTCGTGGAGGATACGGACGCATCTTTCGAGGATGTTGAGAAACTC
TTTGGACCGGATGTTTGTGGACTAGTGAGGGAGGTGACGGACGACAAGTC
CCTGGAGAAACAGGAGAGAAAACGCCTGCAAATAGAAAATGCAGCCAAAA
GCAGCTGCAGAGCAAAGCTCATAAAGCTGGCTGACAAATTGGATAACCTA
AGGGATCTGCAAGTCAACACACCGACAGGGTGGACACAGGAGCGTCGTGA
TCAGTACTTCGTTTGGGCCAAAAAGGTGGTGGACAATCTGCGAGGAACCA
ACGCCAACCTGGAGCTCAAGCTGGACGAGATCTTCCGCCAACGCGGCCTT
TTGGCAAGCTTTCTAGACCAT

BO18459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 540 CG11900-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-RA 642 CG11900-RA 67..603 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29201969..29202318 440..91 1750 100 Minus
3R 32079331 3R 29201795..29201911 553..437 585 100 Minus
3R 32079331 3R 29202381..29202459 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:19:05 has no hits.

BO18459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:10 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 1..540 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:24 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 62..606 9..557 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:31 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 67..603 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:10 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11900-RA 62..606 9..557 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:42 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
Mesh1-RA 67..603 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:42 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29201793..29201908 440..555 98 <- Minus
3R 29201970..29202314 95..439 100 <- Minus
3R 29202382..29202459 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:31 Download gff for BO18459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25027515..25027630 440..555 98 <- Minus
arm_3R 25027692..25028036 95..439 100 <- Minus
arm_3R 25028104..25028181 17..94 100   Minus

BO18459.pep Sequence

Translation from 16 to 571

> BO18459.pep
MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI
TDEGVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQE
RKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVW
AKKVVDNLRGTNANLELKLDEIFRQRGLLASFLDH

BO18459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mesh1-PA 179 CG11900-PA 1..179 1..179 923 100 Plus