Clone Sequence Records
BO18463.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO18463.5prime
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGGCAAGCTTTCTAGACC
BO18463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PA | 552 | CG15642-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..837 | 12..565 | 2755 | 99.8 | Plus |
CG15642-RA | 1261 | CG15642-RA | 56..609 | 12..565 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466836..15467267 | 565..134 | 2160 | 100 | Minus |
X | 23542271 | X | 15467353..15467474 | 133..12 | 595 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-08 14:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 435..542 | 115 | 58.6 | Plus |
BO18463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:19 Download gff for
BO18463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:02 Download gff for
BO18463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..609 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:07 Download gff for
BO18463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..609 | 9..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:07 Download gff for
BO18463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466836..15467267 | 134..565 | 100 | <- | Minus |
X | 15467353..15467477 | 9..133 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:02 Download gff for
BO18463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360869..15361300 | 134..565 | 100 | <- | Minus |
arm_X | 15361386..15361510 | 9..133 | 98 | | Minus |
BO18463.3prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO18463.3prime
ATGGTCTAGAAAGCTTGCCGATTCCGGGTAGCGTCGCACGCGTCGCTTTT
GCTCATTGGTCGTGGGTGTGCCCACACTGGCGGATTGCTGCTGCTCCTCC
TCATCCTCCTCCGGCAGCTGCTCGTTCCCTTCTAGCGGCAGCGGCAGCTT
ACAGCCTGGCTTGCAGATAACAAAGTGCACCAGAGACACGATCACCTCGA
GAACTATTAGCGCGAACACGGCGTTCGTGATGATGCGTAGCCACAAACTG
CGTCCGGCAGCTGAGAGGCGAAGAAAGACCATGGCGGGCAGCAGGATGCA
TGGTGTCACGGTGAGCAGCATCCACATGGCGGTGGCGCCAGAGCACAGGT
TCACCGAGTAGCCGGCGTATAGGCGTACGGATTCAGCGGACACCGCCAAA
ACGTAGGCCACCAGCATGGACAGGCCCTCCAGGTTCCACAAATGATGCAG
GCGTATGAGCATGTGGATCATGTAGCTCATGGCCCACACCATGGACACAT
ACGTGTTGGCCTGCAGCAGCATTTGCAGCACCAGGTTGGCCCGATGCGGC
GTCACCGAGTACGCCATGTCGACTGATAACT
BO18463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PA | 552 | CG15642-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..837 | 572..19 | 2755 | 99.8 | Minus |
CG15642-RA | 1261 | CG15642-RA | 56..609 | 572..19 | 2755 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466836..15467267 | 19..450 | 2160 | 100 | Plus |
X | 23542271 | X | 15467353..15467474 | 451..572 | 595 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-12 03:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 149..42 | 115 | 58.6 | Minus |
BO18463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:18 Download gff for
BO18463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:32 Download gff for
BO18463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..609 | 19..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:31 Download gff for
BO18463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..609 | 19..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:31 Download gff for
BO18463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466837..15467267 | 20..450 | 100 | <- | Plus |
X | 15467353..15467477 | 451..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:32 Download gff for
BO18463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360870..15361300 | 20..450 | 100 | <- | Plus |
arm_X | 15361386..15361510 | 451..575 | 98 | | Plus |
BO18463.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ634426
> BO18463.complete
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGGCAAGCTTTCTAGACCAT
BO18463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 552 | CG15642-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG15642-RA | 552 | CG15642-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..837 | 12..565 | 2755 | 99.8 | Plus |
CG15642-RA | 1261 | CG15642-RA | 56..609 | 12..565 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466836..15467267 | 565..134 | 2160 | 100 | Minus |
X | 23542271 | X | 15467353..15467474 | 133..12 | 595 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-27 15:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 435..542 | 115 | 58.6 | Plus |
BO18463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:22 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:30 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:00 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 61..609 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:22 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:34 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 61..609 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:34 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466834..15467267 | 134..567 | 99 | <- | Minus |
X | 15467353..15467469 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:00 Download gff for
BO18463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360867..15361300 | 134..567 | 99 | <- | Minus |
arm_X | 15361386..15361502 | 17..133 | 100 | | Minus |
BO18463.pep Sequence
Translation from 16 to 583
> BO18463.pep
MAYSVTPHRANLVLQMLLQANTYVSMVWAMSYMIHMLIRLHHLWNLEGLS
MLVAYVLAVSAESVRLYAGYSVNLCSGATAMWMLLTVTPCILLPAMVFLR
LSAAGRSLWLRIITNAVFALIVLEVIVSLVHFVICKPGCKLPLPLEGNEQ
LPEEDEEEQQQSASVGTPTTNEQKRRVRRYPESASFLDH
BO18463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PB | 183 | CG15642-PB | 1..183 | 1..183 | 935 | 100 | Plus |
CG15642-PA | 183 | CG15642-PA | 1..183 | 1..183 | 935 | 100 | Plus |