Clone BO18463 Report

Search the DGRC for BO18463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG15642-RA
Protein status:BO18463.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO18463.5prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO18463.5prime
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGGCAAGCTTTCTAGACC

BO18463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-PA 552 CG15642-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-RB 1489 CG15642-RB 284..837 12..565 2755 99.8 Plus
CG15642-RA 1261 CG15642-RA 56..609 12..565 2755 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466836..15467267 565..134 2160 100 Minus
X 23542271 X 15467353..15467474 133..12 595 99.2 Minus
Blast to na_te.dros performed 2015-02-08 14:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6887 435..542 115 58.6 Plus

BO18463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:19 Download gff for BO18463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-PA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:02 Download gff for BO18463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 53..609 9..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:07 Download gff for BO18463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 53..609 9..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:07 Download gff for BO18463.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15466836..15467267 134..565 100 <- Minus
X 15467353..15467477 9..133 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:02 Download gff for BO18463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15360869..15361300 134..565 100 <- Minus
arm_X 15361386..15361510 9..133 98   Minus

BO18463.3prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO18463.3prime
ATGGTCTAGAAAGCTTGCCGATTCCGGGTAGCGTCGCACGCGTCGCTTTT
GCTCATTGGTCGTGGGTGTGCCCACACTGGCGGATTGCTGCTGCTCCTCC
TCATCCTCCTCCGGCAGCTGCTCGTTCCCTTCTAGCGGCAGCGGCAGCTT
ACAGCCTGGCTTGCAGATAACAAAGTGCACCAGAGACACGATCACCTCGA
GAACTATTAGCGCGAACACGGCGTTCGTGATGATGCGTAGCCACAAACTG
CGTCCGGCAGCTGAGAGGCGAAGAAAGACCATGGCGGGCAGCAGGATGCA
TGGTGTCACGGTGAGCAGCATCCACATGGCGGTGGCGCCAGAGCACAGGT
TCACCGAGTAGCCGGCGTATAGGCGTACGGATTCAGCGGACACCGCCAAA
ACGTAGGCCACCAGCATGGACAGGCCCTCCAGGTTCCACAAATGATGCAG
GCGTATGAGCATGTGGATCATGTAGCTCATGGCCCACACCATGGACACAT
ACGTGTTGGCCTGCAGCAGCATTTGCAGCACCAGGTTGGCCCGATGCGGC
GTCACCGAGTACGCCATGTCGACTGATAACT

BO18463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-PA 552 CG15642-RA 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-RB 1489 CG15642-RB 284..837 572..19 2755 99.8 Minus
CG15642-RA 1261 CG15642-RA 56..609 572..19 2755 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466836..15467267 19..450 2160 100 Plus
X 23542271 X 15467353..15467474 451..572 595 99.2 Plus
Blast to na_te.dros performed 2015-02-12 03:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6887 149..42 115 58.6 Minus

BO18463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:18 Download gff for BO18463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-PA 1..552 18..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:32 Download gff for BO18463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 53..609 19..575 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:31 Download gff for BO18463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 53..609 19..575 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:31 Download gff for BO18463.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15466837..15467267 20..450 100 <- Plus
X 15467353..15467477 451..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:32 Download gff for BO18463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15360870..15361300 20..450 100 <- Plus
arm_X 15361386..15361510 451..575 98   Plus

BO18463.complete Sequence

583 bp assembled on 2006-10-11

GenBank Submission: FJ634426

> BO18463.complete
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGGCAAGCTTTCTAGACCAT

BO18463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-RB 552 CG15642-PB 1..549 17..565 2745 100 Plus
CG15642-RA 552 CG15642-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-RB 1489 CG15642-RB 284..837 12..565 2755 99.8 Plus
CG15642-RA 1261 CG15642-RA 56..609 12..565 2755 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15466836..15467267 565..134 2160 100 Minus
X 23542271 X 15467353..15467474 133..12 595 99.2 Minus
Blast to na_te.dros performed 2014-11-27 15:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6887 435..542 115 58.6 Plus

BO18463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:22 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:30 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:00 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 61..609 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:22 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:34 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
CG15642-RA 61..609 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:34 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
X 15466834..15467267 134..567 99 <- Minus
X 15467353..15467469 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:00 Download gff for BO18463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15360867..15361300 134..567 99 <- Minus
arm_X 15361386..15361502 17..133 100   Minus

BO18463.pep Sequence

Translation from 16 to 583

> BO18463.pep
MAYSVTPHRANLVLQMLLQANTYVSMVWAMSYMIHMLIRLHHLWNLEGLS
MLVAYVLAVSAESVRLYAGYSVNLCSGATAMWMLLTVTPCILLPAMVFLR
LSAAGRSLWLRIITNAVFALIVLEVIVSLVHFVICKPGCKLPLPLEGNEQ
LPEEDEEEQQQSASVGTPTTNEQKRRVRRYPESASFLDH

BO18463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15642-PB 183 CG15642-PB 1..183 1..183 935 100 Plus
CG15642-PA 183 CG15642-PA 1..183 1..183 935 100 Plus