Clone Sequence Records
BO18466.5prime Sequence
596 bp (596 high quality bases) assembled on 2006-10-13
> BO18466.5prime
GAAGTTATCAGTCGACATGCCTGGTGAGGCAAATAACACGCCTCAATCCG
GACGGAGACCCCGACTCGGATTGAGTAGGCGTGGTTGCCAGTCAACGCCC
TTAATAAGACTTCAGAGAGACGATTCCGCTGCAAATACACCAAAATGTAG
TGAACAGGAGACTCCGCGGGCACCGCCTTTATCGCTGAGCTCTCGCAGGA
TAGGATTGTCCAAAAGCAGGACAGGCTTGTCCAAGAAGAAGCTAGAGTTT
GCTGCGGCCCACGGAATTAAGGACGAGGAACGGGAAATAGTGAAGAAAAC
AGCAAAAAAGGATAAAAAGGAAAGGAATGATGCTCAAGAGGCTCTTGATG
CGCCAGAGGAGATACAGGAGCACGGCAACCAGAAGAACCAGCTTGAAAAC
AGTCCACAGAGCAGTAAAATCGTTGAGCTACAGGGCGATATAGAAATCTG
GCGGCAGGGATTCAAAGCTTCTGTGGGTGACCTACTAACTATGGCGGAGC
CAGGACTCTCAAGAAGCGATCTCCTTACTCGGCTGGGCATTCCCCACGAG
ATGCTACGCTATCTGGAGGAGGAGTGTCCAGCAAGCTTTCTAGACC
BO18466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-PA | 567 | CG15536-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-RA | 664 | CG15536-RA | 26..589 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30424574..30425137 | 580..17 | 2820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:48:43 has no hits.
BO18466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:22 Download gff for
BO18466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-PA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:50 Download gff for
BO18466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..594 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:11 Download gff for
BO18466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..594 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:11 Download gff for
BO18466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30424569..30425137 | 17..588 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:50 Download gff for
BO18466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26250291..26250859 | 17..588 | 99 | | Minus |
BO18466.3prime Sequence
596 bp (596 high quality bases) assembled on 2006-10-13
> BO18466.3prime
ATGGTCTAGAAAGCTTGCTGGACACTCCTCCTCCAGATAGCGTAGCATCT
CGTGGGGAATGCCCAGCCGAGTAAGGAGATCGCTTCTTGAGAGTCCTGGC
TCCGCCATAGTTAGTAGGTCACCCACAGAAGCTTTGAATCCCTGCCGCCA
GATTTCTATATCGCCCTGTAGCTCAACGATTTTACTGCTCTGTGGACTGT
TTTCAAGCTGGTTCTTCTGGTTGCCGTGCTCCTGTATCTCCTCTGGCGCA
TCAAGAGCCTCTTGAGCATCATTCCTTTCCTTTTTATCCTTTTTTGCTGT
TTTCTTCACTATTTCCCGTTCCTCGTCCTTAATTCCGTGGGCCGCAGCAA
ACTCTAGCTTCTTCTTGGACAAGCCTGTCCTGCTTTTGGACAATCCTATC
CTGCGAGAGCTCAGCGATAAAGGCGGTGCCCGCGGAGTCTCCTGTTCACT
ACATTTTGGTGTATTTGCAGCGGAATCGTCTCTCTGAAGTCTTATTAAGG
GCGTTGACTGGCAACCACGCCTACTCAATCCGAGTCGGGGTCTCCGTCCG
GATTGAGGCGTGTTATTTGCCTCACCAGGCATGTCGACTGATAACT
BO18466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-PA | 567 | CG15536-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-RA | 664 | CG15536-RA | 26..589 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30424574..30425137 | 19..582 | 2820 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:13:47 has no hits.
BO18466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:21 Download gff for
BO18466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-PA | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:20 Download gff for
BO18466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..594 | 11..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:35 Download gff for
BO18466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..594 | 11..582 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:35 Download gff for
BO18466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30424569..30425137 | 11..582 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:20 Download gff for
BO18466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26250291..26250859 | 11..582 | 99 | | Plus |
BO18466.complete Sequence
598 bp assembled on 2006-10-11
GenBank Submission: FJ634427
> BO18466.complete
GAAGTTATCAGTCGACATGCCTGGTGAGGCAAATAACACGCCTCAATCCG
GACGGAGACCCCGACTCGGATTGAGTAGGCGTGGTTGCCAGTCAACGCCC
TTAATAAGACTTCAGAGAGACGATTCCGCTGCAAATACACCAAAATGTAG
TGAACAGGAGACTCCGCGGGCACCGCCTTTATCGCTGAGCTCTCGCAGGA
TAGGATTGTCCAAAAGCAGGACAGGCTTGTCCAAGAAGAAGCTAGAGTTT
GCTGCGGCCCACGGAATTAAGGACGAGGAACGGGAAATAGTGAAGAAAAC
AGCAAAAAAGGATAAAAAGGAAAGGAATGATGCTCAAGAGGCTCTTGATG
CGCCAGAGGAGATACAGGAGCACGGCAACCAGAAGAACCAGCTTGAAAAC
AGTCCACAGAGCAGTAAAATCGTTGAGCTACAGGGCGATATAGAAATCTG
GCGGCAGGGATTCAAAGCTTCTGTGGGTGACCTACTAACTATGGCGGAGC
CAGGACTCTCAAGAAGCGATCTCCTTACTCGGCTGGGCATTCCCCACGAG
ATGCTACGCTATCTGGAGGAGGAGTGTCCAGCAAGCTTTCTAGACCAT
BO18466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-RA | 567 | CG15536-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-RA | 664 | CG15536-RA | 26..589 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30424574..30425137 | 580..17 | 2820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:21:37 has no hits.
BO18466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:32 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:42 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:51 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..589 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:32 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:39 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15536-RA | 26..589 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:39 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30424572..30425137 | 17..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:51 Download gff for
BO18466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26250294..26250859 | 17..582 | 99 | | Minus |
BO18466.pep Sequence
Translation from 16 to 598
> BO18466.pep
MPGEANNTPQSGRRPRLGLSRRGCQSTPLIRLQRDDSAANTPKCSEQETP
RAPPLSLSSRRIGLSKSRTGLSKKKLEFAAAHGIKDEEREIVKKTAKKDK
KERNDAQEALDAPEEIQEHGNQKNQLENSPQSSKIVELQGDIEIWRQGFK
ASVGDLLTMAEPGLSRSDLLTRLGIPHEMLRYLEEECPASFLDH
BO18466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15536-PA | 188 | CG15536-PA | 1..188 | 1..188 | 964 | 100 | Plus |
