Clone Sequence Records
BO18471.3prime Sequence
638 bp (638 high quality bases) assembled on 2006-10-13
> BO18471.3prime
ATGGTCTAGAAAGCTTGCGGCTATGTGGTGAAGAATGCCCTGCCTCACGA
GAGACTCCACCTGAGCTCGGGGCAGATAGTGCTGGCTGTTCTTCTTCAGG
TGGATCACCTCGCCGTCGTCCAGCTCGAACTTCCCATAGTCCTCCATGCA
GCGCACCTCGATGTAAAGTGACTTGGGCGGACGCAGATTGTTGGTTAGAT
CAATGGGCAAGCCCTGGTTGTAGCCCGCACTGCACATGTAGGCAGCCAGG
GACTTGGAGTAGTTGTTGAAGAAGGTGACCTCCGGTTCGCAGAGTGCCTG
CTTGATGTCCCCGGGGATAATGGGTCCAAACTCCCACCTGAGGGCCTTGA
TCCTCCTGCACCGCTCGTATAGGTAGGCCAGCAGGCACCGCTTGTTCCTC
TGGAGAGCTGCGTGCCTGAAGTTGAGCAGGGGCCACAGACTGCGATCCCC
GGAAGCATTGTAGCTGGAGGCCTGGGCCACGTTCTCCTCGAATATCGCCT
TGATCTCCTCCAGCACCTGGCGCACCCCATCGTCGTCGAAGGCGGGAATT
GTCTGAGACGATCTCTCCAGTTCTTTAAGCAGGTCGAAGGCTTTCTCGCC
GAACATTTTTGTTTGTCGGCTCATGTCGACTGATAACT
BO18471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9187-PA | 609 | CG9187-RA | 1..606 | 624..19 | 2955 | 99.5 | Minus |
| CG32318-PA | 495 | CG32318-RA | 318..492 | 193..19 | 875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..609 | 624..19 | 2985 | 99.5 | Minus |
| CG32318-RA | 785 | CG32318-RA | 608..782 | 193..19 | 875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247069..1247674 | 19..624 | 2985 | 99.5 | Plus |
| 3L | 28110227 | 3L | 1246076..1246250 | 19..193 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:03:30 has no hits.
BO18471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:23 Download gff for
BO18471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9187-PA | 1..609 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:23 Download gff for
BO18471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 19..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:09 Download gff for
BO18471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 19..626 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:09 Download gff for
BO18471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247069..1247681 | 19..634 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:23 Download gff for
BO18471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247069..1247681 | 19..634 | 98 | | Plus |
BO18471.5prime Sequence
638 bp (638 high quality bases) assembled on 2006-10-13
> BO18471.5prime
GAAGTTATCAGTCGACATGAGCCGACAAACAAAAATGTTCGGCGAGAAAG
CCTTCGACCTGCTTAAAGAACTGGAGAGATCGTCTCAGACAATTCCCGCC
TTCGACGACGATGGGGTGCGCCAGGTGCTGGAGGAGATCAAGGCGATATT
CGAGGAGAACGTGGCCCAGGCCTCCAGCTACAATGCTTCCGGGGATCGCA
GTCTGTGGCCCCTGCTCAACTTCAGGCACGCAGCTCTCCAGAGGAACAAG
CGGTGCCTGCTGGCCTACCTATACGAGCGGTGCAGGAGGATCAAGGCCCT
CAGGTGGGAGTTTGGACCCATTATCCCCGGGGACATCAAGCAGGCACTCT
GCGAACCGGAGGTCACCTTCTTCAACAACTACTCCAAGTCCCTGGCTGCC
TACATGTGCAGTGCGGGCTACAACCAGGGCTTGCCCATTGATCTAACCAA
CAATCTGCGTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATGGAGG
ACTATGGGAAGTTCGAGCTGGACGACGGCGAGGTGATCCACCTGAAGAAG
AACAGCCAGCACTATCTGCCCCGAGCTCAGGTGGAGTCTCTCGTGAGGCA
GGGCATTCTTCACCACATAGCCGCAAGCTTTCTAGACC
BO18471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9187-PA | 609 | CG9187-RA | 1..606 | 17..622 | 2955 | 99.5 | Plus |
| CG32318-PA | 495 | CG32318-RA | 318..492 | 448..622 | 875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..609 | 17..622 | 2985 | 99.5 | Plus |
| CG32318-RA | 785 | CG32318-RA | 608..782 | 448..622 | 875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247069..1247674 | 622..17 | 2985 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1246076..1246250 | 622..448 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:19:03 has no hits.
BO18471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:24 Download gff for
BO18471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9187-PA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:42:11 Download gff for
BO18471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 15..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:45 Download gff for
BO18471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 15..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:45 Download gff for
BO18471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247069..1247681 | 7..622 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:42:11 Download gff for
BO18471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247069..1247681 | 7..622 | 98 | | Minus |
BO18471.complete Sequence
640 bp assembled on 2006-10-11
GenBank Submission: FJ634428
> BO18471.complete
GAAGTTATCAGTCGACATGAGCCGACAAACAAAAATGTTCGGCGAGAAAG
CCTTCGACCTGCTTAAAGAACTGGAGAGATCGTCTCAGACAATTCCCGCC
TTCGACGACGATGGGGTGCGCCAGGTGCTGGAGGAGATCAAGGCGATATT
CGAGGAGAACGTGGCCCAGGCCTCCAGCTACAATGCTTCCGGGGATCGCA
GTCTGTGGCCCCTGCTCAACTTCAGGCACGCAGCTCTCCAGAGGAACAAG
CGGTGCCTGCTGGCCTACCTATACGAGCGGTGCAGGAGGATCAAGGCCCT
CAGGTGGGAGTTTGGACCCATTATCCCCGGGGACATCAAGCAGGCACTCT
GCGAACCGGAGGTCACCTTCTTCAACAACTACTCCAAGTCCCTGGCTGCC
TACATGTGCAGTGCGGGCTACAACCAGGGCTTGCCCATTGATCTAACCAA
CAATCTGCGTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATGGAGG
ACTATGGGAAGTTCGAGCTGGACGACGGCGAGGTGATCCACCTGAAGAAG
AACAGCCAGCACTATCTGCCCCGAGCTCAGGTGGAGTCTCTCGTGAGGCA
GGGCATTCTTCACCACATAGCCGCAAGCTTTCTAGACCAT
BO18471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 609 | CG9187-PA | 1..606 | 17..622 | 2985 | 99.5 | Plus |
| CG32318-RA | 495 | CG32318-PA | 318..492 | 448..622 | 875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..609 | 17..622 | 2985 | 99.5 | Plus |
| CG32318-RA | 785 | CG32318-RA | 608..782 | 448..622 | 875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247069..1247674 | 622..17 | 2985 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1246076..1246250 | 622..448 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:53:06 has no hits.
BO18471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:05 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:42 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:36 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 4..609 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:05 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:23 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 4..609 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:23 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247067..1247674 | 17..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:36 Download gff for
BO18471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247067..1247674 | 17..624 | 99 | | Minus |
BO18471.pep Sequence
Translation from 16 to 640
> BO18471.pep
MSRQTKMFGEKAFDLLKELERSSQTIPAFDDDGVRQVLEEIKAIFEENVA
QASSYNASGDRSLWPLLNFRHAALQRNKRCLLAYLYERCRRIKALRWEFG
PIIPGDIKQALCEPEVTFFNNYSKSLAAYMCSAGYNQGLPIDLTNNLRPP
KSLYIEVRCMEDYGKFELDDGEVIHLKKNSQHYLPRAQVESLVRQGILHH
IAASFLDH
BO18471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-PA | 202 | CG9187-PA | 1..202 | 1..202 | 1060 | 100 | Plus |
| CG32318-PA | 164 | CG32318-PA | 107..164 | 145..202 | 308 | 100 | Plus |
