Clone Sequence Records
BO18472.3prime Sequence
569 bp (569 high quality bases) assembled on 2006-10-13
> BO18472.3prime
ATGGTCTAGAAAGCTTGCTCTGCACTCTATGCAACACGCTGAGCAGCAGC
AGTGGTAACATTCCATGTCTGGATACAGATCCTGTTCCTCAACCTGTTCC
TGATCCTGTTCCTGCTCCTGGTCGTACATCCTCTTCCGCCTGGCTGACCG
ATACAGTCGCCGGATGAGAGCTCCATATGGTTTCCGCGCCATCAGGTGAG
TGGTTGTCTTGTGTATTTCGTAGACGCAATTCGTTTCGAGACACACAAAA
GGCTCCTCCACCTGCAGGATAGTTTCCGATCTGAGATTGGGTACTGGCAT
TGGTAGCAGACTCCTCTGTTTCAAGATATTGATCTTGCTCTTCTTGACCA
CCCTCCTTTTCTTGGCAGGATTGGGTGCTGTAATGGCACCTTGGATCTCC
GCCTCGAAGGATTCCTGGCGCCTGGAGGCCTTGCTCTTCAAGGCCGAAAC
CGTTTTGTATCGGTTCTGGATATCGGTAATGTTTCTCAAGGTCTGCTTAA
AAGCAACCTCGACTTGCTCGACTTCCTGCAGCGTATTCCACAGATTCTTT
TCCATGTCGACTGATAACT
BO18472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 540 | CG5139-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..665 | 555..19 | 2685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198602..1199138 | 19..555 | 2685 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 205..279 | 107 | 66.2 | Plus |
BO18472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:24 Download gff for
BO18472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-PA | 1..540 | 15..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:36 Download gff for
BO18472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..610 | 10..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:07 Download gff for
BO18472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..672 | 10..555 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:07 Download gff for
BO18472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198595..1199138 | 10..555 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:36 Download gff for
BO18472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198595..1199138 | 10..555 | 99 | | Plus |
BO18472.5prime Sequence
569 bp (569 high quality bases) assembled on 2006-10-13
> BO18472.5prime
GAAGTTATCAGTCGACATGGAAAAGAATCTGTGGAATACGCTGCAGGAAG
TCGAGCAAGTCGAGGTTGCTTTTAAGCAGACCTTGAGAAACATTACCGAT
ATCCAGAACCGATACAAAACGGTTTCGGCCTTGAAGAGCAAGGCCTCCAG
GCGCCAGGAATCCTTCGAGGCGGAGATCCAAGGTGCCATTACAGCACCCA
ATCCTGCCAAGAAAAGGAGGGTGGTCAAGAAGAGCAAGATCAATATCTTG
AAACAGAGGAGTCTGCTACCAATGCCAGTACCCAATCTCAGATCGGAAAC
TATCCTGCAGGTGGAGGAGCCTTTTGTGTGTCTCGAAACGAATTGCGTCT
ACGAAATACACAAGACAACCACTCACCTGATGGCGCGGAAACCATATGGA
GCTCTCATCCGGCGACTGTATCGGTCAGCCAGGCGGAAGAGGATGTACGA
CCAGGAGCAGGAACAGGATCAGGAACAGGTTGAGGAACAGGATCTGTATC
CAGACATGGAATGTTACCACTGCTGCTGCTCAGCGTGTTGCATAGAGTGC
AGAGCAAGCTTTCTAGACC
BO18472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 540 | CG5139-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..665 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198602..1199138 | 553..17 | 2685 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 367..293 | 107 | 66.2 | Minus |
BO18472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:25 Download gff for
BO18472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-PA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:29 Download gff for
BO18472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..610 | 17..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:38 Download gff for
BO18472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..672 | 17..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:38 Download gff for
BO18472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198595..1199138 | 17..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:29 Download gff for
BO18472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198595..1199138 | 17..562 | 99 | | Minus |
BO18472.complete Sequence
571 bp assembled on 2006-10-11
GenBank Submission: FJ634429
> BO18472.complete
GAAGTTATCAGTCGACATGGAAAAGAATCTGTGGAATACGCTGCAGGAAG
TCGAGCAAGTCGAGGTTGCTTTTAAGCAGACCTTGAGAAACATTACCGAT
ATCCAGAACCGATACAAAACGGTTTCGGCCTTGAAGAGCAAGGCCTCCAG
GCGCCAGGAATCCTTCGAGGCGGAGATCCAAGGTGCCATTACAGCACCCA
ATCCTGCCAAGAAAAGGAGGGTGGTCAAGAAGAGCAAGATCAATATCTTG
AAACAGAGGAGTCTGCTACCAATGCCAGTACCCAATCTCAGATCGGAAAC
TATCCTGCAGGTGGAGGAGCCTTTTGTGTGTCTCGAAACGAATTGCGTCT
ACGAAATACACAAGACAACCACTCACCTGATGGCGCGGAAACCATATGGA
GCTCTCATCCGGCGACTGTATCGGTCAGCCAGGCGGAAGAGGATGTACGA
CCAGGAGCAGGAACAGGATCAGGAACAGGTTGAGGAACAGGATCTGTATC
CAGACATGGAATGTTACCACTGCTGCTGCTCAGCGTGTTGCATAGAGTGC
AGAGCAAGCTTTCTAGACCAT
BO18472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 540 | CG5139-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-RA | 802 | CG5139-RA | 129..665 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1198602..1199138 | 553..17 | 2685 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 3425..3504 | 367..293 | 107 | 66.2 | Minus |
BO18472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:25 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 1..540 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:32 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 52..591 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:12 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 67..603 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:25 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 52..591 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:42 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5139-RA | 129..665 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:42 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1198600..1199138 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:12 Download gff for
BO18472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1198600..1199138 | 17..555 | 99 | | Minus |
BO18472.pep Sequence
Translation from 16 to 571
> BO18472.pep
MEKNLWNTLQEVEQVEVAFKQTLRNITDIQNRYKTVSALKSKASRRQESF
EAEIQGAITAPNPAKKRRVVKKSKINILKQRSLLPMPVPNLRSETILQVE
EPFVCLETNCVYEIHKTTTHLMARKPYGALIRRLYRSARRKRMYDQEQEQ
DQEQVEEQDLYPDMECYHCCCSACCIECRASFLDH
BO18472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5139-PA | 179 | CG5139-PA | 1..179 | 1..179 | 939 | 100 | Plus |
