Clone BO18473 Report

Search the DGRC for BO18473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG9406-RA
Protein status:BO18473.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO18473.3prime Sequence

589 bp (589 high quality bases) assembled on 2006-10-13

> BO18473.3prime
ATGGTCTAGAAAGCTTGCACCTTTGGTTGTTGTGGTTTCTTGCCCTTTTC
TTTTTCGGCTTGTGCTAGTTCCTCCTTGATAACCTCGGCAATTTCATAGA
TATCAGGCTTGTGCCTGAGTTGATTTATGTAGAAGGTGTAGGGAATGTGT
CCAGTAATGGGATCAATTGCCACAGGCCACATAGCATCCAATTCTTCAGC
GGAGAAAGGTTCTCCTTCCTCCGCCATTAATTTGCCGAAGTACTCCTTGG
TCAGATATTTTTTATTTTCTGGATCCAGGGTCTCAAAGGCCTCGAGAAGC
TTTTCCGACGAGGCTGGTTCCATTTGTCGATCCATCAGCAGTTTGGAAAC
GTGTTCCATGAACTTCACCAAATGGGCTTCGCCTGGATAGTCGACGGAAT
CGGTGGCTTTAATGACATCTTCGACCTCTTTTTCGGTGGGCGCGCAACCT
AAAAATCGGAGCACGTTGCCGACATTGCGGGAATCAATATACTTATCGCC
ATGAGTATCAAATATGCAAAATGCTTCCGAAATCTTTTCCTCGAGTTCGT
TGTTTAGGGTAACACCAACTTCCATGTCGACTGATAACT

BO18473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 561 CG9406-RA 1..552 575..24 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..659 575..24 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 563..325 1195 100 Minus
2R 25286936 2R 21142836..21143046 324..114 1055 100 Minus
2R 25286936 2R 21143098..21143188 114..24 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:57:21 has no hits.

BO18473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:26 Download gff for BO18473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-PA 1..552 24..575 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:38 Download gff for BO18473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..659 24..579 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:21 Download gff for BO18473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..659 24..579 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:21 Download gff for BO18473.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21142836..21143046 114..324 100 -> Minus
2R 21143099..21143188 24..113 100   Minus
2R 21142546..21142783 325..562 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:38 Download gff for BO18473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030051..17030288 325..562 100 -> Minus
arm_2R 17030341..17030551 114..324 100 -> Minus
arm_2R 17030604..17030693 24..113 100   Minus

BO18473.5prime Sequence

590 bp (590 high quality bases) assembled on 2006-10-13

> BO18473.5prime
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTGCAAGCTTTCTAGACC

BO18473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 561 CG9406-RA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..665 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 29..267 1195 100 Plus
2R 25286936 2R 21142836..21143046 268..478 1055 100 Plus
2R 25286936 2R 21143098..21143194 478..574 485 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:25:09 has no hits.

BO18473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:26 Download gff for BO18473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:38 Download gff for BO18473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..665 13..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:48 Download gff for BO18473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 104..665 13..574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:48 Download gff for BO18473.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21142546..21142783 30..267 100 -> Plus
2R 21142836..21143046 268..478 100 -> Plus
2R 21143099..21143194 479..574 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:38 Download gff for BO18473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030051..17030288 30..267 100 -> Plus
arm_2R 17030341..17030551 268..478 100 -> Plus
arm_2R 17030604..17030699 479..574 100   Plus

BO18473.complete Sequence

592 bp assembled on 2006-10-11

GenBank Submission: FJ634430

> BO18473.complete
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTGCAAGCTTTCTAGACCAT

BO18473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 561 CG9406-PA 1..558 17..574 2790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-RA 732 CG9406-RA 108..665 17..574 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21142545..21142783 29..267 1195 100 Plus
2R 25286936 2R 21142836..21143046 268..478 1055 100 Plus
2R 25286936 2R 21143098..21143194 478..574 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:11:22 has no hits.

BO18473.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:54 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:47 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 29..593 13..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:19 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 108..665 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:54 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 29..593 13..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:58 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
CG9406-RA 108..665 17..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:58 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21142546..21142783 30..267 100 -> Plus
2R 21142836..21143046 268..478 100 -> Plus
2R 21143099..21143194 479..576 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:19 Download gff for BO18473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17030051..17030288 30..267 100 -> Plus
arm_2R 17030341..17030551 268..478 100 -> Plus
arm_2R 17030604..17030699 479..576 97   Plus

BO18473.pep Sequence

Translation from 16 to 592

> BO18473.pep
MEVGVTLNNELEEKISEAFCIFDTHGDKYIDSRNVGNVLRFLGCAPTEKE
VEDVIKATDSVDYPGEAHLVKFMEHVSKLLMDRQMEPASSEKLLEAFETL
DPENKKYLTKEYFGKLMAEEGEPFSAEELDAMWPVAIDPITGHIPYTFYI
NQLRHKPDIYEIAEVIKEELAQAEKEKGKKPQQPLFASFLDH

BO18473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9406-PA 186 CG9406-PA 1..186 1..186 972 100 Plus
CG11041-PB 155 CG11041-PB 5..151 7..153 569 70.1 Plus
Cam-PD 149 CG8472-PD 5..149 7..156 163 28.7 Plus
Cam-PC 149 CG8472-PC 5..149 7..156 163 28.7 Plus
Cam-PE 149 CG8472-PE 5..149 7..156 163 28.7 Plus