Clone Sequence Records
BO18473.3prime Sequence
589 bp (589 high quality bases) assembled on 2006-10-13
> BO18473.3prime
ATGGTCTAGAAAGCTTGCACCTTTGGTTGTTGTGGTTTCTTGCCCTTTTC
TTTTTCGGCTTGTGCTAGTTCCTCCTTGATAACCTCGGCAATTTCATAGA
TATCAGGCTTGTGCCTGAGTTGATTTATGTAGAAGGTGTAGGGAATGTGT
CCAGTAATGGGATCAATTGCCACAGGCCACATAGCATCCAATTCTTCAGC
GGAGAAAGGTTCTCCTTCCTCCGCCATTAATTTGCCGAAGTACTCCTTGG
TCAGATATTTTTTATTTTCTGGATCCAGGGTCTCAAAGGCCTCGAGAAGC
TTTTCCGACGAGGCTGGTTCCATTTGTCGATCCATCAGCAGTTTGGAAAC
GTGTTCCATGAACTTCACCAAATGGGCTTCGCCTGGATAGTCGACGGAAT
CGGTGGCTTTAATGACATCTTCGACCTCTTTTTCGGTGGGCGCGCAACCT
AAAAATCGGAGCACGTTGCCGACATTGCGGGAATCAATATACTTATCGCC
ATGAGTATCAAATATGCAAAATGCTTCCGAAATCTTTTCCTCGAGTTCGT
TGTTTAGGGTAACACCAACTTCCATGTCGACTGATAACT
BO18473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 561 | CG9406-RA | 1..552 | 575..24 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..659 | 575..24 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 563..325 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 21142836..21143046 | 324..114 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21143098..21143188 | 114..24 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:57:21 has no hits.
BO18473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:26 Download gff for
BO18473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-PA | 1..552 | 24..575 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:38 Download gff for
BO18473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..659 | 24..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:21 Download gff for
BO18473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..659 | 24..579 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:21 Download gff for
BO18473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21142836..21143046 | 114..324 | 100 | -> | Minus |
2R | 21143099..21143188 | 24..113 | 100 | | Minus |
2R | 21142546..21142783 | 325..562 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:38 Download gff for
BO18473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030051..17030288 | 325..562 | 100 | -> | Minus |
arm_2R | 17030341..17030551 | 114..324 | 100 | -> | Minus |
arm_2R | 17030604..17030693 | 24..113 | 100 | | Minus |
BO18473.5prime Sequence
590 bp (590 high quality bases) assembled on 2006-10-13
> BO18473.5prime
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTGCAAGCTTTCTAGACC
BO18473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 561 | CG9406-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..665 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 29..267 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 21142836..21143046 | 268..478 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21143098..21143194 | 478..574 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:25:09 has no hits.
BO18473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:26 Download gff for
BO18473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:38 Download gff for
BO18473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..665 | 13..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:48 Download gff for
BO18473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 104..665 | 13..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:48 Download gff for
BO18473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21142546..21142783 | 30..267 | 100 | -> | Plus |
2R | 21142836..21143046 | 268..478 | 100 | -> | Plus |
2R | 21143099..21143194 | 479..574 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:38 Download gff for
BO18473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030051..17030288 | 30..267 | 100 | -> | Plus |
arm_2R | 17030341..17030551 | 268..478 | 100 | -> | Plus |
arm_2R | 17030604..17030699 | 479..574 | 100 | | Plus |
BO18473.complete Sequence
592 bp assembled on 2006-10-11
GenBank Submission: FJ634430
> BO18473.complete
GAAGTTATCAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCG
AGGAAAAGATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAG
TATATTGATTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGC
GCCCACCGAAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCG
ACTATCCAGGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAA
CTGCTGATGGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGA
GGCCTTTGAGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGT
ACTTCGGCAAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAA
TTGGATGCTATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCC
CTACACCTTCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAA
TTGCCGAGGTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGC
AAGAAACCACAACAACCACTGTTTGCAAGCTTTCTAGACCAT
BO18473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 561 | CG9406-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-RA | 732 | CG9406-RA | 108..665 | 17..574 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21142545..21142783 | 29..267 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 21142836..21143046 | 268..478 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21143098..21143194 | 478..574 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:11:22 has no hits.
BO18473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:54 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:47 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 29..593 | 13..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:19 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 108..665 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:54 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 29..593 | 13..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:58 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9406-RA | 108..665 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:58 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21142546..21142783 | 30..267 | 100 | -> | Plus |
2R | 21142836..21143046 | 268..478 | 100 | -> | Plus |
2R | 21143099..21143194 | 479..576 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:19 Download gff for
BO18473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17030051..17030288 | 30..267 | 100 | -> | Plus |
arm_2R | 17030341..17030551 | 268..478 | 100 | -> | Plus |
arm_2R | 17030604..17030699 | 479..576 | 97 | | Plus |
BO18473.pep Sequence
Translation from 16 to 592
> BO18473.pep
MEVGVTLNNELEEKISEAFCIFDTHGDKYIDSRNVGNVLRFLGCAPTEKE
VEDVIKATDSVDYPGEAHLVKFMEHVSKLLMDRQMEPASSEKLLEAFETL
DPENKKYLTKEYFGKLMAEEGEPFSAEELDAMWPVAIDPITGHIPYTFYI
NQLRHKPDIYEIAEVIKEELAQAEKEKGKKPQQPLFASFLDH
BO18473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9406-PA | 186 | CG9406-PA | 1..186 | 1..186 | 972 | 100 | Plus |
CG11041-PB | 155 | CG11041-PB | 5..151 | 7..153 | 569 | 70.1 | Plus |
Cam-PD | 149 | CG8472-PD | 5..149 | 7..156 | 163 | 28.7 | Plus |
Cam-PC | 149 | CG8472-PC | 5..149 | 7..156 | 163 | 28.7 | Plus |
Cam-PE | 149 | CG8472-PE | 5..149 | 7..156 | 163 | 28.7 | Plus |