Clone Sequence Records
BO18475.3prime Sequence
635 bp (635 high quality bases) assembled on 2006-10-13
> BO18475.3prime
ATGGTCTAGAAAGCTTGCATTGGCAAAGCTCTGTGCGCTTCCCTGGGATT
GGGTCTGCATTGGAGTGCCGGGCTCGAGACTTCCGAAGATCAGCGCGGAG
CAGCGGCGATGAAGGGTGCGACGCCAGTCGAGCATCCCGCAGCGGAGCTT
CTGGGGCAACGCGGTGGCCCATAGGGAAAGCCACAGAAGACATGCGCCGA
TCAGGCCGGTAGTCAGGCCCAAAGTCCAGTACTCGCAGACCAGGAAGGTT
TGCTCCTCGACGGCCAAGGCCTGGAGTATGCCCACAATGGCGCACTGGCA
GAGGGACTCTATGCGATGCCACAGTTTGCTAAGGGTCAGATCCAGCACCA
AACAGCAGACGCCTGTCTCCAGTAAGAGCGATGCCCAGGACGACTCATTG
CCGCGAAGGTTTCGATTCCCATTCCTGAACCGCTGATCGGCGGGCAGGGC
ACTTGAAAACATCCTCACCCCGTGAAGAAGGGTCACAACGCAGGCGGAAA
AGAGCCAGGCGCCCAAGAGAGGAGCAGCGGAGCCGGGAGATTCGCGAAAG
TAGTAGTAGTACGAGATGCCCAGTACCGAGTGAAGCAACACCGCCATGAT
CAAGGCCATTAGTCGAGCCATGTCGACTGATAACT
BO18475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-PA | 606 | CG11379-RA | 1..603 | 621..19 | 2990 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-RB | 1387 | CG11379-RB | 100..702 | 621..19 | 3000 | 99.8 | Minus |
| CG11379-RA | 783 | CG11379-RA | 100..702 | 621..19 | 3000 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1180264..1180866 | 621..19 | 3000 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:31:26 has no hits.
BO18475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:28 Download gff for
BO18475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-PA | 1..606 | 16..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:34 Download gff for
BO18475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 92..702 | 19..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:44 Download gff for
BO18475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 92..702 | 19..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:44 Download gff for
BO18475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1180256..1180866 | 19..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:34 Download gff for
BO18475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1074289..1074899 | 19..631 | 99 | | Minus |
BO18475.5prime Sequence
635 bp (635 high quality bases) assembled on 2006-10-13
> BO18475.5prime
GAAGTTATCAGTCGACATGGCTCGACTAATGGCCTTGATCATGGCGGTGT
TGCTTCACTCGGTACTGGGCATCTCGTACTACTACTACTTTCGCGAATCT
CCCGGCTCCGCTGCTCCTCTCTTGGGCGCCTGGCTCTTTTCCGCCTGCGT
TGTGACCCTTCTTCACGGGGTGAGGATGTTTTCAAGTGCCCTGCCCGCCG
ATCAGCGGTTCAGGAATGGGAATCGAAACCTTCGCGGCAATGAGTCGTCC
TGGGCATCGCTCTTACTGGAGACAGGCGTCTGCTGTTTGGTGCTGGATCT
GACCCTTAGCAAACTGTGGCATCGCATAGAGTCCCTCTGCCAGTGCGCCA
TTGTGGGCATACTCCAGGCCTTGGCCGTCGAGGAGCAAACCTTCCTGGTC
TGCGAGTACTGGACTTTGGGCCTGACTACCGGCCTGATCGGCGCATGTCT
TCTGTGGCTTTCCCTATGGGCCACCGCGTTGCCCCAGAAGCTCCGCTGCG
GGATGCTCGACTGGCGTCGCACCCTTCATCGCCGCTGCTCCGCGCTGATC
TTCGGAAGTCTCGAGCCCGGCACTCCAATGCAGACCCAATCCCAGGGAAG
CGCACAGAGCTTTGCCAATGCAAGCTTTCTAGACC
BO18475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-PA | 606 | CG11379-RA | 1..603 | 17..619 | 2990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-RB | 1387 | CG11379-RB | 100..702 | 17..619 | 3000 | 99.8 | Plus |
| CG11379-RA | 783 | CG11379-RA | 100..702 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1180264..1180866 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:49:05 has no hits.
BO18475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:28 Download gff for
BO18475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:58 Download gff for
BO18475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 92..702 | 7..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:59 Download gff for
BO18475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 92..702 | 7..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:59 Download gff for
BO18475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1180256..1180866 | 7..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:58 Download gff for
BO18475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1074289..1074899 | 7..619 | 99 | | Plus |
BO18475.complete Sequence
637 bp assembled on 2006-10-11
GenBank Submission: FJ634431
> BO18475.complete
GAAGTTATCAGTCGACATGGCTCGACTAATGGCCTTGATCATGGCGGTGT
TGCTTCACTCGGTACTGGGCATCTCGTACTACTACTACTTTCGCGAATCT
CCCGGCTCCGCTGCTCCTCTCTTGGGCGCCTGGCTCTTTTCCGCCTGCGT
TGTGACCCTTCTTCACGGGGTGAGGATGTTTTCAAGTGCCCTGCCCGCCG
ATCAGCGGTTCAGGAATGGGAATCGAAACCTTCGCGGCAATGAGTCGTCC
TGGGCATCGCTCTTACTGGAGACAGGCGTCTGCTGTTTGGTGCTGGATCT
GACCCTTAGCAAACTGTGGCATCGCATAGAGTCCCTCTGCCAGTGCGCCA
TTGTGGGCATACTCCAGGCCTTGGCCGTCGAGGAGCAAACCTTCCTGGTC
TGCGAGTACTGGACTTTGGGCCTGACTACCGGCCTGATCGGCGCATGTCT
TCTGTGGCTTTCCCTATGGGCCACCGCGTTGCCCCAGAAGCTCCGCTGCG
GGATGCTCGACTGGCGTCGCACCCTTCATCGCCGCTGCTCCGCGCTGATC
TTCGGAAGTCTCGAGCCCGGCACTCCAATGCAGACCCAATCCCAGGGAAG
CGCACAGAGCTTTGCCAATGCAAGCTTTCTAGACCAT
BO18475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-RB | 606 | CG11379-PB | 1..603 | 17..619 | 3000 | 99.8 | Plus |
| CG11379-RA | 606 | CG11379-PA | 1..603 | 17..619 | 3000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-RB | 1387 | CG11379-RB | 100..702 | 17..619 | 3000 | 99.8 | Plus |
| CG11379-RA | 783 | CG11379-RA | 100..702 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1180264..1180866 | 17..619 | 3000 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:43 has no hits.
BO18475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:35 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:58 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 50..663 | 7..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:16 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 100..702 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:35 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 50..663 | 7..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:53 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 100..702 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:53 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1180264..1180866 | 17..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:16 Download gff for
BO18475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1074297..1074899 | 17..621 | 99 | | Plus |
BO18475.pep Sequence
Translation from 16 to 637
> BO18475.pep
MARLMALIMAVLLHSVLGISYYYYFRESPGSAAPLLGAWLFSACVVTLLH
GVRMFSSALPADQRFRNGNRNLRGNESSWASLLLETGVCCLVLDLTLSKL
WHRIESLCQCAIVGILQALAVEEQTFLVCEYWTLGLTTGLIGACLLWLSL
WATALPQKLRCGMLDWRRTLHRRCSALIFGSLEPGTPMQTQSQGSAQSFA
NASFLDH
BO18475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-PB | 201 | CG11379-PB | 1..201 | 1..201 | 1056 | 100 | Plus |
| CG11379-PA | 201 | CG11379-PA | 1..201 | 1..201 | 1056 | 100 | Plus |
