Clone BO18479 Report

Search the DGRC for BO18479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG7849-RB
Protein status:BO18479.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO18479.3prime Sequence

827 bp (826 high quality bases) assembled on 2006-10-13

> BO18479.3prime
ATGGTCTAGAAAGCTTGCATCTGTAGCTCGCAGTTCCACTCGCTGTTGTC
GCAGAAGCTGTGGATGCGCCCTCAGGATGTCACGTTGTTGACGGAGGTTC
TTGATAATTCCTGGCAAGTGCCAGGCGTGTCTGAGCAGACTATCTGTCAC
ATCAAAATGGGCATGCCGCACGCAGCGTAGTTGGGAGCAGTGCGCCACGG
TTCGGAGGTCCAAAGCCATATCGTGCACTAGCGTAGCTAAGTACTCCTGC
GTCTCGTTGATGGCGTGCAGTTCCAGGGTGAAGTGCGGTCGATCGAAGTG
AATCAGCTTAATGCCGTAGACGACGGGCTGACTGTCGTCCGCTGGGCGTA
GGAGACCCCTACAGGCCAGTTCATAGGCCTCCTGGGTCTGCAAATCGACA
CCGCAGAGCTCAAACATCTTACGCTGATGGGATGCCTGCATGGAGGCGGC
TAGACTGCTGATCCTGTCTGCGGACACGTGTCGGTGATTGGAGCGCATTA
TGACCCGTGAGTCTGGTAGGTTATTTTCGGTTGCGATGCCTAGGTGCCCG
ATTAGATGGTAGACCCGCACTGGTCGATTTTTCCGAATAGAACTAGACTG
GCCTGCTCCCCTGTTGATCCCAAAGAGCAGGACTCCGCTGGTGTGATCGC
CCAGGCTGGACACTGTGGTGCAGATCAAGTCTCGCGGAAGGTACCGCGGT
CCGGTGGACAGAAGGTGGTCGGATAGATCCGTCTGCTCTCCTATGTTATG
TAGTACGTGATCTGCTGCAGTGCCTGTGCCCAGGAGGCTAATGTTCTCTT
GCAACTTGCGTGGTTTCCTCTGCTCCA

BO18479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 954 CG7849-RB 143..951 827..19 4045 100 Minus
CG7849-PA 741 CG7849-RA 131..738 626..19 3040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 209..1017 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6078030 626..19 3040 100 Minus
2R 25286936 2R 6077173..6077373 827..627 1005 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:11:14 has no hits.

BO18479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:32 Download gff for BO18479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-PB 144..954 15..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:52 Download gff for BO18479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 210..1023 10..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:20 Download gff for BO18479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 210..1023 10..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:20 Download gff for BO18479.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6077174..6077373 627..826 100 -> Minus
2R 6077423..6078036 10..626 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:52 Download gff for BO18479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964679..1964878 627..826 100 -> Minus
arm_2R 1964928..1965541 10..626 99   Minus

BO18479.5prime Sequence

853 bp (781 high quality bases) assembled on 2006-10-13

> BO18479.5prime
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTC

BO18479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 954 CG7849-RB 1..837 17..853 4185 100 Plus
CG7849-PA 741 CG7849-RA 131..624 360..853 2470 100 Plus
CG7849-PA 741 CG7849-RA 1..130 17..146 650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 67..903 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6077916 360..853 2470 100 Plus
2R 25286936 2R 6077160..6077373 146..359 1070 100 Plus
2R 25286936 2R 6076976..6077106 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:51:35 has no hits.

BO18479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:32 Download gff for BO18479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-PB 1..837 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:12 Download gff for BO18479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 56..903 5..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:25 Download gff for BO18479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 56..903 5..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:25 Download gff for BO18479.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6076965..6077105 5..146 96 -> Plus
2R 6077161..6077373 147..359 100 -> Plus
2R 6077423..6077916 360..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:12 Download gff for BO18479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964470..1964610 5..146 96 -> Plus
arm_2R 1964666..1964878 147..359 100 -> Plus
arm_2R 1964928..1965421 360..853 100   Plus

BO18479.complete Sequence

985 bp assembled on 2006-10-11

GenBank Submission: FJ634432

> BO18479.complete
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCCAGGAATTATCAAGAACCTCCGTCAACA
ACGTGACATCCTGAGGGCGCATCCACAGCTTCTGCGACAACAGCGAGTGG
AACTGCGAGCTACAGATGCAAGCTTTCTAGACCAT

BO18479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 954 CG7849-PB 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 67..1017 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6078030 360..967 3040 100 Plus
2R 25286936 2R 6077160..6077373 146..359 1070 100 Plus
2R 25286936 2R 6076976..6077106 17..147 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:19:02 has no hits.

BO18479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:16 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:01 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:36 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 67..1017 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:16 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:55 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 67..1017 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:55 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6076976..6077105 17..146 100 -> Plus
2R 6077161..6077373 147..359 100 -> Plus
2R 6077423..6078030 360..969 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:36 Download gff for BO18479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964481..1964610 17..146 100 -> Plus
arm_2R 1964666..1964878 147..359 100 -> Plus
arm_2R 1964928..1965535 360..969 99   Plus

BO18479.pep Sequence

Translation from 16 to 985

> BO18479.pep
MALTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQ
RKPRKLQENISLLGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLIC
TTVSSLGDHTSGVLLFGINRGAGQSSSIRKNRPVRVYHLIGHLGIATENN
LPDSRVIMRSNHRHVSADRISSLAASMQASHQRKMFELCGVDLQTQEAYE
LACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVHD
MALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDILR
AHPQLLRQQRVELRATDASFLDH

BO18479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 317 CG7849-PB 1..317 1..317 1647 100 Plus