Clone Sequence Records
BO18479.3prime Sequence
827 bp (826 high quality bases) assembled on 2006-10-13
> BO18479.3prime
ATGGTCTAGAAAGCTTGCATCTGTAGCTCGCAGTTCCACTCGCTGTTGTC
GCAGAAGCTGTGGATGCGCCCTCAGGATGTCACGTTGTTGACGGAGGTTC
TTGATAATTCCTGGCAAGTGCCAGGCGTGTCTGAGCAGACTATCTGTCAC
ATCAAAATGGGCATGCCGCACGCAGCGTAGTTGGGAGCAGTGCGCCACGG
TTCGGAGGTCCAAAGCCATATCGTGCACTAGCGTAGCTAAGTACTCCTGC
GTCTCGTTGATGGCGTGCAGTTCCAGGGTGAAGTGCGGTCGATCGAAGTG
AATCAGCTTAATGCCGTAGACGACGGGCTGACTGTCGTCCGCTGGGCGTA
GGAGACCCCTACAGGCCAGTTCATAGGCCTCCTGGGTCTGCAAATCGACA
CCGCAGAGCTCAAACATCTTACGCTGATGGGATGCCTGCATGGAGGCGGC
TAGACTGCTGATCCTGTCTGCGGACACGTGTCGGTGATTGGAGCGCATTA
TGACCCGTGAGTCTGGTAGGTTATTTTCGGTTGCGATGCCTAGGTGCCCG
ATTAGATGGTAGACCCGCACTGGTCGATTTTTCCGAATAGAACTAGACTG
GCCTGCTCCCCTGTTGATCCCAAAGAGCAGGACTCCGCTGGTGTGATCGC
CCAGGCTGGACACTGTGGTGCAGATCAAGTCTCGCGGAAGGTACCGCGGT
CCGGTGGACAGAAGGTGGTCGGATAGATCCGTCTGCTCTCCTATGTTATG
TAGTACGTGATCTGCTGCAGTGCCTGTGCCCAGGAGGCTAATGTTCTCTT
GCAACTTGCGTGGTTTCCTCTGCTCCA
BO18479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 954 | CG7849-RB | 143..951 | 827..19 | 4045 | 100 | Minus |
CG7849-PA | 741 | CG7849-RA | 131..738 | 626..19 | 3040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 209..1017 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6078030 | 626..19 | 3040 | 100 | Minus |
2R | 25286936 | 2R | 6077173..6077373 | 827..627 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:11:14 has no hits.
BO18479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:32 Download gff for
BO18479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-PB | 144..954 | 15..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:52 Download gff for
BO18479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 210..1023 | 10..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:20 Download gff for
BO18479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 210..1023 | 10..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:20 Download gff for
BO18479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6077174..6077373 | 627..826 | 100 | -> | Minus |
2R | 6077423..6078036 | 10..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:52 Download gff for
BO18479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964679..1964878 | 627..826 | 100 | -> | Minus |
arm_2R | 1964928..1965541 | 10..626 | 99 | | Minus |
BO18479.5prime Sequence
853 bp (781 high quality bases) assembled on 2006-10-13
> BO18479.5prime
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTC
BO18479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 954 | CG7849-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG7849-PA | 741 | CG7849-RA | 131..624 | 360..853 | 2470 | 100 | Plus |
CG7849-PA | 741 | CG7849-RA | 1..130 | 17..146 | 650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 67..903 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6077916 | 360..853 | 2470 | 100 | Plus |
2R | 25286936 | 2R | 6077160..6077373 | 146..359 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 6076976..6077106 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:51:35 has no hits.
BO18479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:32 Download gff for
BO18479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-PB | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:12 Download gff for
BO18479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 56..903 | 5..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:25 Download gff for
BO18479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 56..903 | 5..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:25 Download gff for
BO18479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6076965..6077105 | 5..146 | 96 | -> | Plus |
2R | 6077161..6077373 | 147..359 | 100 | -> | Plus |
2R | 6077423..6077916 | 360..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:12 Download gff for
BO18479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964470..1964610 | 5..146 | 96 | -> | Plus |
arm_2R | 1964666..1964878 | 147..359 | 100 | -> | Plus |
arm_2R | 1964928..1965421 | 360..853 | 100 | | Plus |
BO18479.complete Sequence
985 bp assembled on 2006-10-11
GenBank Submission: FJ634432
> BO18479.complete
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCCAGGAATTATCAAGAACCTCCGTCAACA
ACGTGACATCCTGAGGGCGCATCCACAGCTTCTGCGACAACAGCGAGTGG
AACTGCGAGCTACAGATGCAAGCTTTCTAGACCAT
BO18479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 954 | CG7849-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 67..1017 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6078030 | 360..967 | 3040 | 100 | Plus |
2R | 25286936 | 2R | 6077160..6077373 | 146..359 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 6076976..6077106 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:19:02 has no hits.
BO18479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:16 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:01 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:36 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 67..1017 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:16 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:55 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 67..1017 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:55 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6076976..6077105 | 17..146 | 100 | -> | Plus |
2R | 6077161..6077373 | 147..359 | 100 | -> | Plus |
2R | 6077423..6078030 | 360..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:36 Download gff for
BO18479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964481..1964610 | 17..146 | 100 | -> | Plus |
arm_2R | 1964666..1964878 | 147..359 | 100 | -> | Plus |
arm_2R | 1964928..1965535 | 360..969 | 99 | | Plus |
BO18479.pep Sequence
Translation from 16 to 985
> BO18479.pep
MALTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQ
RKPRKLQENISLLGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLIC
TTVSSLGDHTSGVLLFGINRGAGQSSSIRKNRPVRVYHLIGHLGIATENN
LPDSRVIMRSNHRHVSADRISSLAASMQASHQRKMFELCGVDLQTQEAYE
LACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVHD
MALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDILR
AHPQLLRQQRVELRATDASFLDH
BO18479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 317 | CG7849-PB | 1..317 | 1..317 | 1647 | 100 | Plus |