Clone Sequence Records
BO18480.3prime Sequence
674 bp (674 high quality bases) assembled on 2006-10-13
> BO18480.3prime
ATGGTCTAGAAAGCTTGCACAGCAGGTATTGCTGTCTTTGGCCCTCTGCC
GATCTTTGCCAGCTAAATTGATTGGTTCATCCGGTGGCTCTGCAGTGTCC
TCCGTTTCTTGCCCACCTGACAAGCGATTTGGGGTATGAATCACAAGACG
ATTGTATATGCCAACTGACAACATGTTGAATACGTCATTTACATTCGCGC
CACTCTTGGCGGAAACCTCATAAAAGCCGAGTGCCCGATGATTGGCATAG
TTGAAACCCTGCTCCATGCGCACCTGACGATTATCCAGATCATCACACTT
GTTGCCCACCAGCATGACGTTCACACTTTCCGAAGACATGCGCCGTATCT
CCTTCAGCCAGCCATCGATGTTTCGGAAACTTTTGGACGACGTTATGTCG
TAAACGAGCAGTATGCCATGGGCACCGCGATAATAGGATGGCAGCAGCGA
CTTAAAGCGCTCATCGCCGGCGGTATCCCAGATCTGCAGCATAACCATCC
GACCGGCCAACTCCACGTTGCGCACCCTGAAATCCATGCCCACCGTGCAC
ACGTGTTTCTCGGTGAATCGGTTATCCGAGAAACGCATCAGCAGGCAGGA
TTTGCCCACGCCGATGTCACCCAGGACGAGAATCTTAAACAGATAGTCGT
ATTGGCTCATGTCGACTGATAACT
BO18480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32670-PA | 645 | CG32670-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
CG2885-PA | 588 | RabX2-RA | 169..325 | 492..336 | 460 | 91.7 | Minus |
CG2885-PA | 588 | RabX2-RA | 1..105 | 660..556 | 375 | 94.2 | Minus |
CG9807-PA | 594 | CG9807-RA | 242..327 | 425..340 | 355 | 96.5 | Minus |
CG32678-PA | 594 | Rab9D-RA | 242..327 | 425..340 | 355 | 96.5 | Minus |
CG32671-PA | 594 | CG32671-RA | 242..327 | 425..340 | 355 | 96.5 | Minus |
CG32673-PA | 594 | CG32673-RA | 242..327 | 425..340 | 355 | 96.5 | Minus |
CG9807-PA | 594 | CG9807-RA | 1..101 | 660..560 | 305 | 92 | Minus |
CG32678-PA | 594 | Rab9D-RA | 1..99 | 660..562 | 295 | 91.9 | Minus |
CG32671-PA | 594 | CG32671-RA | 1..99 | 660..562 | 295 | 91.9 | Minus |
CG32673-PA | 594 | CG32673-RA | 1..99 | 660..562 | 295 | 91.9 | Minus |
CG2885-PA | 588 | RabX2-RA | 385..461 | 276..200 | 210 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..709 | 660..19 | 3210 | 100 | Minus |
RabX2-RA | 791 | CG2885-RA | 68..717 | 660..19 | 1610 | 83.9 | Minus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 660..25 | 1280 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951778..10952419 | 19..660 | 3210 | 100 | Plus |
X | 23542271 | X | 10417496..10418122 | 660..38 | 1535 | 83.7 | Minus |
X | 23542271 | X | 10622514..10623158 | 25..660 | 1220 | 80 | Plus |
X | 23542271 | X | 10589182..10589826 | 660..25 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10661114..10661758 | 25..660 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10950319..10950963 | 25..660 | 1160 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:25:38 has no hits.
BO18480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:33 Download gff for
BO18480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32670-PA | 1..645 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:43 Download gff for
BO18480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 4..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:52 Download gff for
BO18480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 4..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:52 Download gff for
BO18480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951765..10952419 | 4..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:43 Download gff for
BO18480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845798..10846452 | 4..660 | 99 | | Plus |
BO18480.5prime Sequence
674 bp (674 high quality bases) assembled on 2006-10-13
> BO18480.5prime
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTGCAAGCTTTCTAGACC
BO18480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32670-PA | 645 | CG32670-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG2885-PA | 588 | RabX2-RA | 169..325 | 185..341 | 460 | 91.7 | Plus |
CG2885-PA | 588 | RabX2-RA | 1..105 | 17..121 | 375 | 94.2 | Plus |
CG9807-PA | 594 | CG9807-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32678-PA | 594 | Rab9D-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32671-PA | 594 | CG32671-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG32673-PA | 594 | CG32673-RA | 242..327 | 252..337 | 355 | 96.5 | Plus |
CG9807-PA | 594 | CG9807-RA | 1..101 | 17..117 | 305 | 92 | Plus |
CG32678-PA | 594 | Rab9D-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG32671-PA | 594 | CG32671-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG32673-PA | 594 | CG32673-RA | 1..99 | 17..115 | 295 | 91.9 | Plus |
CG2885-PA | 588 | RabX2-RA | 385..461 | 401..477 | 210 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..709 | 17..658 | 3210 | 100 | Plus |
RabX2-RA | 791 | CG2885-RA | 68..717 | 17..658 | 1610 | 83.9 | Plus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 17..652 | 1280 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951778..10952419 | 658..17 | 3210 | 100 | Minus |
X | 23542271 | X | 10417496..10418122 | 17..639 | 1535 | 83.7 | Plus |
X | 23542271 | X | 10622514..10623158 | 652..17 | 1220 | 80 | Minus |
X | 23542271 | X | 10589182..10589826 | 17..652 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10661114..10661758 | 652..17 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10950319..10950963 | 652..17 | 1160 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:59:24 has no hits.
BO18480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:33 Download gff for
BO18480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32670-PA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:48 Download gff for
BO18480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:16 Download gff for
BO18480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 17..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:16 Download gff for
BO18480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951765..10952419 | 17..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:48 Download gff for
BO18480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845798..10846452 | 17..673 | 99 | | Minus |
BO18480.complete Sequence
676 bp assembled on 2006-10-11
GenBank Submission: FJ634433
> BO18480.complete
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTGCAAGCTTTCTAGACCAT
BO18480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 645 | CG32670-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
RabX2-RA | 588 | CG2885-PA | 1..513 | 17..529 | 1500 | 86.2 | Plus |
Rab9Db-RA | 594 | CG9807-PA | 1..488 | 17..498 | 1130 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-RA | 878 | CG32670-RA | 68..709 | 17..658 | 3210 | 100 | Plus |
RabX2-RA | 791 | CG2885-RA | 68..694 | 17..639 | 1535 | 83.7 | Plus |
Rab9Db-RA | 871 | CG9807-RA | 68..712 | 17..652 | 1220 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10951778..10952419 | 658..17 | 3210 | 100 | Minus |
X | 23542271 | X | 10417496..10418122 | 17..639 | 1535 | 83.7 | Plus |
X | 23542271 | X | 10622514..10623158 | 652..17 | 1220 | 80 | Minus |
X | 23542271 | X | 10589182..10589826 | 17..652 | 1175 | 79.5 | Plus |
X | 23542271 | X | 10661114..10661758 | 652..17 | 1175 | 79.5 | Minus |
X | 23542271 | X | 10950319..10950963 | 652..17 | 1160 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:48:43 has no hits.
BO18480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:17 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:03 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:27 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..709 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:18 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..722 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:31 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Fb-RA | 68..709 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:31 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10951776..10952419 | 17..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:27 Download gff for
BO18480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10845809..10846452 | 17..660 | 99 | | Minus |
BO18480.pep Sequence
Translation from 16 to 676
> BO18480.pep
MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVE
LAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDG
WLKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVS
AKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLA
GKDRQRAKDSNTCCASFLDH
BO18480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Fb-PA | 214 | CG32670-PA | 1..214 | 1..214 | 1125 | 100 | Plus |
RabX2-PA | 195 | CG2885-PA | 1..195 | 1..194 | 687 | 67.2 | Plus |
Rab9Db-PA | 197 | CG9807-PA | 1..197 | 1..194 | 577 | 60.9 | Plus |
Rab9E-PA | 197 | CG32673-PA | 1..197 | 1..194 | 573 | 60.4 | Plus |
Rab9Fa-PA | 197 | CG32671-PA | 1..197 | 1..194 | 571 | 59.9 | Plus |