Clone BO18480 Report

Search the DGRC for BO18480

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptRab9Fb-RA
Protein status:BO18480.pep: validated full length
Sequenced Size:676

Clone Sequence Records

BO18480.3prime Sequence

674 bp (674 high quality bases) assembled on 2006-10-13

> BO18480.3prime
ATGGTCTAGAAAGCTTGCACAGCAGGTATTGCTGTCTTTGGCCCTCTGCC
GATCTTTGCCAGCTAAATTGATTGGTTCATCCGGTGGCTCTGCAGTGTCC
TCCGTTTCTTGCCCACCTGACAAGCGATTTGGGGTATGAATCACAAGACG
ATTGTATATGCCAACTGACAACATGTTGAATACGTCATTTACATTCGCGC
CACTCTTGGCGGAAACCTCATAAAAGCCGAGTGCCCGATGATTGGCATAG
TTGAAACCCTGCTCCATGCGCACCTGACGATTATCCAGATCATCACACTT
GTTGCCCACCAGCATGACGTTCACACTTTCCGAAGACATGCGCCGTATCT
CCTTCAGCCAGCCATCGATGTTTCGGAAACTTTTGGACGACGTTATGTCG
TAAACGAGCAGTATGCCATGGGCACCGCGATAATAGGATGGCAGCAGCGA
CTTAAAGCGCTCATCGCCGGCGGTATCCCAGATCTGCAGCATAACCATCC
GACCGGCCAACTCCACGTTGCGCACCCTGAAATCCATGCCCACCGTGCAC
ACGTGTTTCTCGGTGAATCGGTTATCCGAGAAACGCATCAGCAGGCAGGA
TTTGCCCACGCCGATGTCACCCAGGACGAGAATCTTAAACAGATAGTCGT
ATTGGCTCATGTCGACTGATAACT

BO18480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32670-PA 645 CG32670-RA 1..642 660..19 3210 100 Minus
CG2885-PA 588 RabX2-RA 169..325 492..336 460 91.7 Minus
CG2885-PA 588 RabX2-RA 1..105 660..556 375 94.2 Minus
CG9807-PA 594 CG9807-RA 242..327 425..340 355 96.5 Minus
CG32678-PA 594 Rab9D-RA 242..327 425..340 355 96.5 Minus
CG32671-PA 594 CG32671-RA 242..327 425..340 355 96.5 Minus
CG32673-PA 594 CG32673-RA 242..327 425..340 355 96.5 Minus
CG9807-PA 594 CG9807-RA 1..101 660..560 305 92 Minus
CG32678-PA 594 Rab9D-RA 1..99 660..562 295 91.9 Minus
CG32671-PA 594 CG32671-RA 1..99 660..562 295 91.9 Minus
CG32673-PA 594 CG32673-RA 1..99 660..562 295 91.9 Minus
CG2885-PA 588 RabX2-RA 385..461 276..200 210 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..709 660..19 3210 100 Minus
RabX2-RA 791 CG2885-RA 68..717 660..19 1610 83.9 Minus
Rab9Db-RA 871 CG9807-RA 68..712 660..25 1280 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951778..10952419 19..660 3210 100 Plus
X 23542271 X 10417496..10418122 660..38 1535 83.7 Minus
X 23542271 X 10622514..10623158 25..660 1220 80 Plus
X 23542271 X 10589182..10589826 660..25 1175 79.5 Minus
X 23542271 X 10661114..10661758 25..660 1175 79.5 Plus
X 23542271 X 10950319..10950963 25..660 1160 79.4 Plus
Blast to na_te.dros performed on 2015-02-10 16:25:38 has no hits.

BO18480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:33 Download gff for BO18480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32670-PA 1..645 15..660 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:13:43 Download gff for BO18480.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 4..660 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:52 Download gff for BO18480.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 4..660 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:52 Download gff for BO18480.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10951765..10952419 4..660 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:13:43 Download gff for BO18480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845798..10846452 4..660 99   Plus

BO18480.5prime Sequence

674 bp (674 high quality bases) assembled on 2006-10-13

> BO18480.5prime
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTGCAAGCTTTCTAGACC

BO18480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32670-PA 645 CG32670-RA 1..642 17..658 3210 100 Plus
CG2885-PA 588 RabX2-RA 169..325 185..341 460 91.7 Plus
CG2885-PA 588 RabX2-RA 1..105 17..121 375 94.2 Plus
CG9807-PA 594 CG9807-RA 242..327 252..337 355 96.5 Plus
CG32678-PA 594 Rab9D-RA 242..327 252..337 355 96.5 Plus
CG32671-PA 594 CG32671-RA 242..327 252..337 355 96.5 Plus
CG32673-PA 594 CG32673-RA 242..327 252..337 355 96.5 Plus
CG9807-PA 594 CG9807-RA 1..101 17..117 305 92 Plus
CG32678-PA 594 Rab9D-RA 1..99 17..115 295 91.9 Plus
CG32671-PA 594 CG32671-RA 1..99 17..115 295 91.9 Plus
CG32673-PA 594 CG32673-RA 1..99 17..115 295 91.9 Plus
CG2885-PA 588 RabX2-RA 385..461 401..477 210 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..709 17..658 3210 100 Plus
RabX2-RA 791 CG2885-RA 68..717 17..658 1610 83.9 Plus
Rab9Db-RA 871 CG9807-RA 68..712 17..652 1280 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951778..10952419 658..17 3210 100 Minus
X 23542271 X 10417496..10418122 17..639 1535 83.7 Plus
X 23542271 X 10622514..10623158 652..17 1220 80 Minus
X 23542271 X 10589182..10589826 17..652 1175 79.5 Plus
X 23542271 X 10661114..10661758 652..17 1175 79.5 Minus
X 23542271 X 10950319..10950963 652..17 1160 79.4 Minus
Blast to na_te.dros performed on 2015-02-10 16:59:24 has no hits.

BO18480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:33 Download gff for BO18480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32670-PA 1..645 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:48 Download gff for BO18480.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:16 Download gff for BO18480.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 17..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:16 Download gff for BO18480.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10951765..10952419 17..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:48 Download gff for BO18480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845798..10846452 17..673 99   Minus

BO18480.complete Sequence

676 bp assembled on 2006-10-11

GenBank Submission: FJ634433

> BO18480.complete
GAAGTTATCAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCG
TCCTGGGTGACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCG
GATAACCGATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAG
GGTGCGCAACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGG
ATACCGCCGGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGC
GGTGCCCATGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTT
CCGAAACATCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAA
GTGTGAACGTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGT
CAGGTGCGCATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGG
CTTTTATGAGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCA
ACATGTTGTCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAAT
CGCTTGTCAGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGA
ACCAATCAATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATA
CCTGCTGTGCAAGCTTTCTAGACCAT

BO18480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 645 CG32670-PA 1..642 17..658 3210 100 Plus
RabX2-RA 588 CG2885-PA 1..513 17..529 1500 86.2 Plus
Rab9Db-RA 594 CG9807-PA 1..488 17..498 1130 82.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-RA 878 CG32670-RA 68..709 17..658 3210 100 Plus
RabX2-RA 791 CG2885-RA 68..694 17..639 1535 83.7 Plus
Rab9Db-RA 871 CG9807-RA 68..712 17..652 1220 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10951778..10952419 658..17 3210 100 Minus
X 23542271 X 10417496..10418122 17..639 1535 83.7 Plus
X 23542271 X 10622514..10623158 652..17 1220 80 Minus
X 23542271 X 10589182..10589826 17..652 1175 79.5 Plus
X 23542271 X 10661114..10661758 652..17 1175 79.5 Minus
X 23542271 X 10950319..10950963 652..17 1160 79.4 Minus
Blast to na_te.dros performed on 2014-11-27 16:48:43 has no hits.

BO18480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:17 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 1..645 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:03 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:27 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..709 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:18 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..722 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:31 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fb-RA 68..709 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:31 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
X 10951776..10952419 17..660 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:27 Download gff for BO18480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10845809..10846452 17..660 99   Minus

BO18480.pep Sequence

Translation from 16 to 676

> BO18480.pep
MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVE
LAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDG
WLKEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVS
AKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLA
GKDRQRAKDSNTCCASFLDH

BO18480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fb-PA 214 CG32670-PA 1..214 1..214 1125 100 Plus
RabX2-PA 195 CG2885-PA 1..195 1..194 687 67.2 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..194 577 60.9 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..194 573 60.4 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..194 571 59.9 Plus