Clone Sequence Records
BO18484.3prime Sequence
785 bp (739 high quality bases) assembled on 2006-10-13
> BO18484.3prime
ATGGTCTAGAAAGCTTGCGGCCTCCTCATCCAGCCACTCCAGCCGGAACT
CGCGCTCAAAGACCAGGCGATCGTACAGCCGCACCTCGCTAATCCTCGCC
GAGATGTCCAGCCGCAGTTCGCTGACCGCCAGGTGGAAATTCTGACGCAC
CGTTCGCTGTTTGTCCGGTGTCAATTGATTGAGAGGTTTGCGAAAGATGC
TGATGATGCGCTGCAGATGGTATTCCACGCTGGCACAGCGACCGATGCAA
ACCCACAAGTTCTCCGGATCGTGAATGTTACCCGGGAAGCGGGTGCGTTG
ATCGAAGGGCGCCTTGCCGGACAGCAGAGCTCTCACCTCGGCCACGATCT
CCTGGTGCGTCCTCAGATCGCGTGTGCTGAGGGTGGTGAACTCATACTTG
TCGCAAAAGTACATGAGCTCGGAGATGGCCACCCACGACTGGGAGCAGAG
TGTGGCATGGTGATTCGACCAGTTGGTGTAGCCAGCTGGACTGGAGGTCT
TGGTAGCCACGGCAGCGGTTGACGAGGAACTTGCATTGGGAGTCGGTGAA
GTGCTCGTTGGACTGCCTGTCTTGGGCTTGGGCGTATCCGAACCATTTAT
GATGGACCTTCTTTCTGTGCGCTGCAGCTGCTCCATTTCCCGCTCGTGCT
CCTTGGCCCTTAAATAGGCCTCCTTCTTCTGCTGCAACTCCTGAAGCTTG
GTCATCTTTGGTGGCGACAACGACTTTGTGAAGATCGAGGGCGGGGGCGG
CGCAAGAGCAGCCTGGTCGCCGTCTGTGTGTGCAA
BO18484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 876 | CG13144-RA | 107..873 | 785..19 | 3785 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 197..963 | 785..19 | 3805 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490492..10491258 | 19..785 | 3805 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:32:58 has no hits.
BO18484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:36 Download gff for
BO18484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-PA | 109..876 | 18..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:43 Download gff for
BO18484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 174..938 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:59 Download gff for
BO18484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 199..963 | 19..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:59 Download gff for
BO18484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490492..10491256 | 19..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:43 Download gff for
BO18484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490492..10491256 | 19..783 | 99 | | Plus |
BO18484.5prime Sequence
783 bp (735 high quality bases) assembled on 2006-10-13
> BO18484.5prime
GAAGTTATCAGTCGACATGCAGAAGGCCATCAAGAAGGAGCTCAGCTTCT
CGCTGGACACGCTGGAGCGCTATAGGGCCAAGTACGGACGCAGTGCATCG
CTGGACACAAACGGCACACCAATTGCACACACAGACGGCGACCAGGCTGC
TCCTGCGCCGCCACCGCCCTCGATCTTCACAAAGTCGTTGTCGCCACCAA
AGATGACCAAGCTTCAGGAGTTGCAGCAGAAGAAGGAGGCCTATTTAAGG
GCCAAGGAGCACGAGCGGGAAATGGAGCAGCTGCAGCGCACAGAAAGAAG
GTCCATCATAAATGGTTCGGATACGCCCAAGCCCAAGACAGGCAGTCCAA
CGAGCACTTCACCGACTCCCAATGCAAGTTCCTCGTCAACCGCTGCCGTG
GCTACCAAGACCTCCAGTCCAGCTGGCTACACCAACTGGTCGAATCACCA
TGCCACACTCTGCTCCCAGTCGTGGGTGGCCATCTCCGAGCTCATGTACT
TTTGCGACAAGTATGAGTTCACCACCCTCAGCACACGCGATCTGAGGACG
CACCAGGAGATCGTGGCCGAGGTGAGAGCTCTGCTGTCCGGCAAGGCGCC
CTTCGATCAACGCACCCGCTTCCCGGGTAACATTCACGATCCGGAGAACT
TGTGGGTTTGCATCGGTCGCTGTGCCAGCGTGGAATACCATCTGCAGCGC
ATCATCAGCATCTTTCGCAAACCTCTCAATCAATTGACACCGGACCAACA
GCGAACGGTGCGTCAGAATTTCCACCTGGCGGT
BO18484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 876 | CG13144-RA | 1..767 | 17..783 | 3810 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 90..857 | 16..783 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490598..10491365 | 783..16 | 3825 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:07:14 has no hits.
BO18484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:36 Download gff for
BO18484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:37 Download gff for
BO18484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 59..832 | 9..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:32 Download gff for
BO18484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 84..857 | 9..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:32 Download gff for
BO18484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490598..10491371 | 9..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:37 Download gff for
BO18484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490598..10491371 | 9..783 | 99 | | Minus |
BO18484.complete Sequence
907 bp assembled on 2006-10-11
GenBank Submission: FJ634434
> BO18484.complete
GAAGTTATCAGTCGACATGCAGAAGGCCATCAAGAAGGAGCTCAGCTTCT
CGCTGGACACGCTGGAGCGCTATAGGGCCAAGTACGGACGCAGTGCATCG
CTGGACACAAACGGCACACCAATTGCACACACAGACGGCGACCAGGCTGC
TCCTGCGCCGCCACCGCCCTCGATCTTCACAAAGTCGTTGTCGCCACCAA
AGATGACCAAGCTTCAGGAGTTGCAGCAGAAGAAGGAGGCCTATTTAAGG
GCCAAGGAGCACGAGCGGGAAATGGAGCAGCTGCAGCGCACAGAAAGAAG
GTCCATCATAAATGGTTCGGATACGCCCAAGCCCAAGACAGGCAGTCCAA
CGAGCACTTCACCGACTCCCAATGCAAGTTCCTCGTCAACCGCTGCCGTG
GCTACCAAGACCTCCAGTCCAGCTGGCTACACCAACTGGTCGAATCACCA
TGCCACACTCTGCTCCCAGTCGTGGGTGGCCATCTCCGAGCTCATGTACT
TTTGCGACAAGTATGAGTTCACCACCCTCAGCACACGCGATCTGAGGACG
CACCAGGAGATCGTGGCCGAGGTGAGAGCTCTGCTGTCCGGCAAGGCGCC
CTTCGATCAACGCACCCGCTTCCCGGGTAACATTCACGATCCGGAGAACT
TGTGGGTTTGCATCGGTCGCTGTGCCAGCGTGGAATACCATCTGCAGCGC
ATCATCAGCATCTTTCGCAAACCTCTCAATCAATTGACACCGGACAAACA
GCGAACGGTGCGTCAGAATTTCCACCTGGCGGTCAGCGAACTGCGGCTGG
ACATCTCGGCGAGGATTAGCGAGGTGCGGCTGTACGATCGCCTGGTCTTT
GAGCGCGAGTTCCGGCTGGAGTGGCTGGATGAGGAGGCCGCAAGCTTTCT
AGACCAT
BO18484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 876 | CG13144-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 90..963 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490492..10491365 | 889..16 | 4370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:54 has no hits.
BO18484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:18 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:05 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:00 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 66..938 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:19 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:37 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 91..963 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:37 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490490..10491364 | 17..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:00 Download gff for
BO18484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490490..10491364 | 17..891 | 99 | | Minus |
BO18484.pep Sequence
Translation from 16 to 907
> BO18484.pep
MQKAIKKELSFSLDTLERYRAKYGRSASLDTNGTPIAHTDGDQAAPAPPP
PSIFTKSLSPPKMTKLQELQQKKEAYLRAKEHEREMEQLQRTERRSIING
SDTPKPKTGSPTSTSPTPNASSSSTAAVATKTSSPAGYTNWSNHHATLCS
QSWVAISELMYFCDKYEFTTLSTRDLRTHQEIVAEVRALLSGKAPFDQRT
RFPGNIHDPENLWVCIGRCASVEYHLQRIISIFRKPLNQLTPDKQRTVRQ
NFHLAVSELRLDISARISEVRLYDRLVFEREFRLEWLDEEAASFLDH
BO18484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 291 | CG13144-PA | 1..291 | 1..291 | 1512 | 100 | Plus |
