Clone Sequence Records
BO18485.3prime Sequence
794 bp (779 high quality bases) assembled on 2006-10-13
> BO18485.3prime
ATGGTCTAGAAAGCTTGCGATGTTAAAGCCGTCCGCATCCAGATGGGTAG
GCGATGATGCTTGCGTAGGACTTATATGCTTCTGAATTAGGGAGTTCTTT
CCATCGTAAGCAAAGAAACAATTGGTTGCGTTGCTAGTAGCTCTCTTTTG
AGGTTGTTTACCCATCTGCATTAGAAGTTCGTCGATCCGTTCCGTTTTCA
ATTTAATAATACTCTCCATGTGGGTCAATCGCTGTTGATAGGCATCGATA
ATAACATCTTTTGCATGACTATCACGTTCCACTTTCTCGTACAGCGAATA
TAGGATCATTTTCTGCGGCACCTGAACTATGCCATCGCCGATCTGTTTGT
TAACCACAACAGTTTTTATCTCATCATTTTCCTCCCAAAGTTGTTCCTGC
CGCAATGCCGCATTTCGTTGTTCTGCAAGGCGTTGTCGTTTCTCCAATCG
TATCACTTCATGCAACATGACTTCGGCGGCACCACTAACACCATTCGCCA
TTTGCTCCATAAAATCTTTAGTCAACGTCATATTTAACTTGGATAACACT
TTAAAGTTGAATGTCTCCCAATTGGCCAACTTCAGCTGAACACTACTCTT
CTTCGGATAATTGAAGAGATCCACCAAGCGCGGATAATCGCGTTTGAATA
TTTCGGCCAGCGGCAAAACATCGGAAAACTCGCGACGCAATCTTTGAGTG
CTAATACTATTTTGTTGCATCCATTTGTTAACTTCCTCTAACTCTTCGCG
GCTCAGATTCTTGCCACTCACGATATGCATGTCGACTGATAACT
BO18485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-PA | 765 | CG12395-RA | 1..762 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-RA | 997 | CG12395-RA | 125..886 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16062013..16062774 | 19..780 | 3810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:44:32 has no hits.
BO18485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:36 Download gff for
BO18485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:15 Download gff for
BO18485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 79..846 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:06 Download gff for
BO18485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 122..889 | 15..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:06 Download gff for
BO18485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16062010..16062777 | 15..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:15 Download gff for
BO18485.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15956043..15956810 | 15..787 | 99 | | Plus |
BO18485.5prime Sequence
768 bp (766 high quality bases) assembled on 2006-10-13
> BO18485.5prime
GAAGTTATCAGTCGACATGCATATCGTGAGTGGCAAGAATCTGAGCCGCG
AAGAGTTAGAGGAAGTTAACAAATGGATGCAACAAAATAGTATTAGCACT
CAAAGATTGCGTCGCGAGTTTTCCGATGTTTTGCCGCTGGCCGAAATATT
CAAACGCGATTATCCGCGCTTGGTGGATCTCTTCAATTATCCGAAGAAGA
GTAGTGTTCAGCTGAAGTTGGCCAATTGGGAGACATTCAACTTTAAAGTG
TTATCCAAGTTAAATATGACGTTGACTAAAGATTTTATGGAGCAAATGGC
GAATGGTGTTAGTGGTGCCGCCGAAGTCATGTTGCATGAAGTGATACGAT
TGGAGAAACGACAACGCCTTGCAGAACAACGAAATGCGGCATTGCGGCAG
GAACAACTTTGGGAGGAAAATGATGAGATAAAAACTGTTGTGGTTAACAA
ACAGATCGGCGATGGCATAGTTCAGGTGCCGCAGAAAATGATCCTATATT
CGCTGTACGAGAAAGTGGAACGTGATAGTCATGCAAAAGATGTTATTATC
GATGCCTATCAACAGCGATTGACCCACATGGAGAGTATTATTAAATTGAA
AACGGAACGGATCGACGAACTTCTAATGCAGATGGGTAAACAACCTCAAA
AGAGAGCTACTAGCAACGCAACCAATTGTTTCTTTGCTTACGATGGAAAG
AACTCCCTAATTCAGAAACATATAAGTCCTACGCAAGCATCATCGCCTAC
CCATCTGGATGCGGACGG
BO18485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-PA | 765 | CG12395-RA | 1..752 | 17..768 | 3735 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-RA | 997 | CG12395-RA | 125..876 | 17..768 | 3745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16062023..16062774 | 768..17 | 3745 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:24 has no hits.
BO18485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:37 Download gff for
BO18485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-PA | 1..752 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:00 Download gff for
BO18485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 79..833 | 10..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:30 Download gff for
BO18485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 122..876 | 10..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:30 Download gff for
BO18485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16062023..16062777 | 10..768 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:00 Download gff for
BO18485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15956056..15956810 | 10..768 | 99 | | Minus |
BO18485.complete Sequence
796 bp assembled on 2006-10-11
GenBank Submission: FJ634435
> BO18485.complete
GAAGTTATCAGTCGACATGCATATCGTGAGTGGCAAGAATCTGAGCCGCG
AAGAGTTAGAGGAAGTTAACAAATGGATGCAACAAAATAGTATTAGCACT
CAAAGATTGCGTCGCGAGTTTTCCGATGTTTTGCCGCTGGCCGAAATATT
CAAACGCGATTATCCGCGCTTGGTGGATCTCTTCAATTATCCGAAGAAGA
GTAGTGTTCAGCTGAAGTTGGCCAATTGGGAGACATTCAACTTTAAAGTG
TTATCCAAGTTAAATATGACGTTGACTAAAGATTTTATGGAGCAAATGGC
GAATGGTGTTAGTGGTGCCGCCGAAGTCATGTTGCATGAAGTGATACGAT
TGGAGAAACGACAACGCCTTGCAGAACAACGAAATGCGGCATTGCGGCAG
GAACAACTTTGGGAGGAAAATGATGAGATAAAAACTGTTGTGGTTAACAA
ACAGATCGGCGATGGCATAGTTCAGGTGCCGCAGAAAATGATCCTATATT
CGCTGTACGAGAAAGTGGAACGTGATAGTCATGCAAAAGATGTTATTATC
GATGCCTATCAACAGCGATTGACCCACATGGAGAGTATTATTAAATTGAA
AACGGAACGGATCGACGAACTTCTAATGCAGATGGGTAAACAACCTCAAA
AGAGAGCTACTAGCAACGCAACCAATTGTTTCTTTGCTTACGATGGAAAG
AACTCCCTAATTCAGAAGCATATAAGTCCTACGCAAGCATCATCGCCTAC
CCATCTGGATGCGGACGGCTTTAACATCGCAAGCTTTCTAGACCAT
BO18485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-RA | 765 | CG12395-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-RA | 997 | CG12395-RA | 125..886 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16062013..16062774 | 778..17 | 3810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:04:40 has no hits.
BO18485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:19 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:06 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 57..824 | 10..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:50 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 82..843 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:20 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 57..824 | 10..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:16 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12395-RA | 125..886 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:16 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16062011..16062774 | 17..780 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:50 Download gff for
BO18485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15956044..15956807 | 17..780 | 99 | | Minus |
BO18485.pep Sequence
Translation from 16 to 796
> BO18485.pep
MHIVSGKNLSREELEEVNKWMQQNSISTQRLRREFSDVLPLAEIFKRDYP
RLVDLFNYPKKSSVQLKLANWETFNFKVLSKLNMTLTKDFMEQMANGVSG
AAEVMLHEVIRLEKRQRLAEQRNAALRQEQLWEENDEIKTVVVNKQIGDG
IVQVPQKMILYSLYEKVERDSHAKDVIIDAYQQRLTHMESIIKLKTERID
ELLMQMGKQPQKRATSNATNCFFAYDGKNSLIQKHISPTQASSPTHLDAD
GFNIASFLDH
BO18485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12395-PA | 254 | CG12395-PA | 1..254 | 1..254 | 1292 | 100 | Plus |
| CG16719-PA | 271 | CG16719-PA | 1..233 | 9..208 | 338 | 36.5 | Plus |
