Clone BO18487 Report

Search the DGRC for BO18487

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptlft-RA
Protein status:BO18487.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO18487.3prime Sequence

828 bp (779 high quality bases) assembled on 2006-10-13

> BO18487.3prime
ATGGTCTAGAAAGCTTGCATCATCAATGGTAGCCGAGTTAAGGGCACTGC
CGCCCAGCTGATTATGTGCTATCATAAGGATATCCTTCTTCTCCTTCGGA
AAGCGCAATTCACGCCCAGCCATGCGAAAGGTCTCCAGCTCCCTCTCGGC
GAGCACCAACTCCCTGCGAATAACGCCTGGATTATCGTGCTCCCTGGCAA
TCCAATCCAATGCCATCTGCGATCGCATCTCGTCGTCCAGGCTCCGGTTC
GAATAATGAGCCACCACTTCCTGCCTGGAGCAGTGGCGTTCGCGCATTGC
TTTCAGCGATCCGTTCCAGTGAAGCAGTTGGAACACGGTCATAAGCTCCT
GGAACTCCAGCATGGTTCTTCCCTTGTTCGCCTCCAGCATGAATCTGAAT
GCTCCGATGCCCGATTCTGTGCCCTCGTTGATTTGCGATGTGCCCTTGAA
GGAAGTGCGAGCATCCTGAACCGCCTTTTGAATGAACTCATCGCTGATTC
GACGCGATGGATGCTCATTAAAGACGGAATTCATTAGGGCGATCTTGGCC
GAACTGCGACGAGCCTCTGCCTTGGTGGGACAGTTTTGAAAACTTCCAAA
GCAGCTTCCTCCAGGAAGTGTTACGAAGCAAATGTATGGCTGGCTATTAG
ACGGAATCGATTCGTAAATCACAAGAGCTCCATTTTTCAATTCAGCTCCA
CGAGACTGCTTCATTTGCCAAAACTCTTGTAGGGCTTCAACGACATTTAC
TCTATAATCTCTATCCTCGTAAAATCCAGTTACGGTTGGTAAACCCAAAA
AGGTTCTTCGGGATAGACCATGTCGACT

BO18487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13139-PA 807 CG13139-RA 30..804 793..19 3875 100 Minus
CG13139-PA 807 CG13139-RA 1..31 821..791 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1017 821..19 3995 99.9 Minus
lft-RA 1266 CG13139-RA 199..1002 821..19 3995 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366146 396..19 1890 100 Minus
2L 23513712 2L 10365490..10365680 585..395 955 100 Minus
2L 23513712 2L 10365263..10365428 751..586 830 100 Minus
2L 23513712 2L 10365118..10365190 821..750 315 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:38:01 has no hits.

BO18487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:37 Download gff for BO18487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13139-PA 1..807 15..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:43 Download gff for BO18487.3prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1007 11..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:20 Download gff for BO18487.3prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1007 11..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:20 Download gff for BO18487.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10365118..10365190 750..821 98 -> Minus
2L 10365265..10365428 586..749 100 -> Minus
2L 10365490..10365680 395..585 100 -> Minus
2L 10365771..10366151 11..394 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:43 Download gff for BO18487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365118..10365190 750..821 98 -> Minus
arm_2L 10365265..10365428 586..749 100 -> Minus
arm_2L 10365490..10365680 395..585 100 -> Minus
arm_2L 10365771..10366151 11..394 98   Minus

BO18487.5prime Sequence

836 bp (741 high quality bases) assembled on 2006-10-13

> BO18487.5prime
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATGCAAGCTTTCTAGACC

BO18487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13139-PA 807 CG13139-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1017 17..820 4020 100 Plus
lft-RA 1266 CG13139-RA 199..1002 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366146 443..820 1890 100 Plus
2L 23513712 2L 10365490..10365680 254..444 955 100 Plus
2L 23513712 2L 10365263..10365428 88..253 830 100 Plus
2L 23513712 2L 10365118..10365190 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:28:46 has no hits.

BO18487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:38 Download gff for BO18487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13139-PA 1..807 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:03 Download gff for BO18487.5prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1007 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:43 Download gff for BO18487.5prime
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1007 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:43 Download gff for BO18487.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10365771..10366151 445..828 98   Plus
2L 10365118..10365190 17..89 100 -> Plus
2L 10365265..10365428 90..253 100 -> Plus
2L 10365490..10365680 254..444 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:03 Download gff for BO18487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365118..10365190 17..89 100 -> Plus
arm_2L 10365265..10365428 90..253 100 -> Plus
arm_2L 10365490..10365680 254..444 100 -> Plus
arm_2L 10365771..10366151 445..828 98   Plus

BO18487.complete Sequence

838 bp assembled on 2006-10-11

GenBank Submission: FJ634436

> BO18487.complete
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATGCAAGCTTTCTAGACCAT

BO18487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 807 CG13139-PB 1..804 17..820 4020 100 Plus
lft-RA 807 CG13139-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
lft-RB 1281 CG13139-RB 214..1017 17..820 4020 100 Plus
lft-RA 1266 CG13139-RA 199..1002 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366146 443..820 1890 100 Plus
2L 23513712 2L 10365490..10365680 254..444 955 100 Plus
2L 23513712 2L 10365263..10365428 88..253 830 100 Plus
2L 23513712 2L 10365118..10365190 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:42:00 has no hits.

BO18487.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:20 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:08 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:43 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1002 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:21 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 17..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:59 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 199..1002 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:59 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10365118..10365190 17..89 100 -> Plus
2L 10365265..10365428 90..253 100 -> Plus
2L 10365490..10365680 254..444 100 -> Plus
2L 10365771..10366146 445..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:43 Download gff for BO18487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10365490..10365680 254..444 100 -> Plus
arm_2L 10365118..10365190 17..89 100 -> Plus
arm_2L 10365265..10365428 90..253 100 -> Plus
arm_2L 10365771..10366146 445..822 99   Plus

BO18487.pep Sequence

Translation from 16 to 838

> BO18487.pep
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDDASFLDH

BO18487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
lft-PB 268 CG13139-PB 1..268 1..268 1395 100 Plus
lft-PA 268 CG13139-PA 1..268 1..268 1395 100 Plus