Clone Sequence Records
BO18487.3prime Sequence
828 bp (779 high quality bases) assembled on 2006-10-13
> BO18487.3prime
ATGGTCTAGAAAGCTTGCATCATCAATGGTAGCCGAGTTAAGGGCACTGC
CGCCCAGCTGATTATGTGCTATCATAAGGATATCCTTCTTCTCCTTCGGA
AAGCGCAATTCACGCCCAGCCATGCGAAAGGTCTCCAGCTCCCTCTCGGC
GAGCACCAACTCCCTGCGAATAACGCCTGGATTATCGTGCTCCCTGGCAA
TCCAATCCAATGCCATCTGCGATCGCATCTCGTCGTCCAGGCTCCGGTTC
GAATAATGAGCCACCACTTCCTGCCTGGAGCAGTGGCGTTCGCGCATTGC
TTTCAGCGATCCGTTCCAGTGAAGCAGTTGGAACACGGTCATAAGCTCCT
GGAACTCCAGCATGGTTCTTCCCTTGTTCGCCTCCAGCATGAATCTGAAT
GCTCCGATGCCCGATTCTGTGCCCTCGTTGATTTGCGATGTGCCCTTGAA
GGAAGTGCGAGCATCCTGAACCGCCTTTTGAATGAACTCATCGCTGATTC
GACGCGATGGATGCTCATTAAAGACGGAATTCATTAGGGCGATCTTGGCC
GAACTGCGACGAGCCTCTGCCTTGGTGGGACAGTTTTGAAAACTTCCAAA
GCAGCTTCCTCCAGGAAGTGTTACGAAGCAAATGTATGGCTGGCTATTAG
ACGGAATCGATTCGTAAATCACAAGAGCTCCATTTTTCAATTCAGCTCCA
CGAGACTGCTTCATTTGCCAAAACTCTTGTAGGGCTTCAACGACATTTAC
TCTATAATCTCTATCCTCGTAAAATCCAGTTACGGTTGGTAAACCCAAAA
AGGTTCTTCGGGATAGACCATGTCGACT
BO18487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13139-PA | 807 | CG13139-RA | 30..804 | 793..19 | 3875 | 100 | Minus |
CG13139-PA | 807 | CG13139-RA | 1..31 | 821..791 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1017 | 821..19 | 3995 | 99.9 | Minus |
lft-RA | 1266 | CG13139-RA | 199..1002 | 821..19 | 3995 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366146 | 396..19 | 1890 | 100 | Minus |
2L | 23513712 | 2L | 10365490..10365680 | 585..395 | 955 | 100 | Minus |
2L | 23513712 | 2L | 10365263..10365428 | 751..586 | 830 | 100 | Minus |
2L | 23513712 | 2L | 10365118..10365190 | 821..750 | 315 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:38:01 has no hits.
BO18487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:37 Download gff for
BO18487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-PA | 1..807 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:43 Download gff for
BO18487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1007 | 11..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:20 Download gff for
BO18487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1007 | 11..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:20 Download gff for
BO18487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365118..10365190 | 750..821 | 98 | -> | Minus |
2L | 10365265..10365428 | 586..749 | 100 | -> | Minus |
2L | 10365490..10365680 | 395..585 | 100 | -> | Minus |
2L | 10365771..10366151 | 11..394 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:43 Download gff for
BO18487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365118..10365190 | 750..821 | 98 | -> | Minus |
arm_2L | 10365265..10365428 | 586..749 | 100 | -> | Minus |
arm_2L | 10365490..10365680 | 395..585 | 100 | -> | Minus |
arm_2L | 10365771..10366151 | 11..394 | 98 | | Minus |
BO18487.5prime Sequence
836 bp (741 high quality bases) assembled on 2006-10-13
> BO18487.5prime
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATGCAAGCTTTCTAGACC
BO18487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13139-PA | 807 | CG13139-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1017 | 17..820 | 4020 | 100 | Plus |
lft-RA | 1266 | CG13139-RA | 199..1002 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366146 | 443..820 | 1890 | 100 | Plus |
2L | 23513712 | 2L | 10365490..10365680 | 254..444 | 955 | 100 | Plus |
2L | 23513712 | 2L | 10365263..10365428 | 88..253 | 830 | 100 | Plus |
2L | 23513712 | 2L | 10365118..10365190 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:28:46 has no hits.
BO18487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:38 Download gff for
BO18487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-PA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:03 Download gff for
BO18487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1007 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:43 Download gff for
BO18487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1007 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:43 Download gff for
BO18487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365771..10366151 | 445..828 | 98 | | Plus |
2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:03 Download gff for
BO18487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
arm_2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
arm_2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
arm_2L | 10365771..10366151 | 445..828 | 98 | | Plus |
BO18487.complete Sequence
838 bp assembled on 2006-10-11
GenBank Submission: FJ634436
> BO18487.complete
GAAGTTATCAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTAC
CAACCGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTT
GAAGCCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATT
GAAAAATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGC
CATACATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTT
CAAAACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGC
CCTAATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATG
AGTTCATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACA
TCGCAAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCAT
GCTGGAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGA
CCGTGTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAA
CGCCACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCT
GGACGACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGC
ACGATAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAG
CTGGAGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAA
GAAGGATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTA
ACTCGGCTACCATTGATGATGCAAGCTTTCTAGACCAT
BO18487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 807 | CG13139-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
lft-RA | 807 | CG13139-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-RB | 1281 | CG13139-RB | 214..1017 | 17..820 | 4020 | 100 | Plus |
lft-RA | 1266 | CG13139-RA | 199..1002 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10365769..10366146 | 443..820 | 1890 | 100 | Plus |
2L | 23513712 | 2L | 10365490..10365680 | 254..444 | 955 | 100 | Plus |
2L | 23513712 | 2L | 10365263..10365428 | 88..253 | 830 | 100 | Plus |
2L | 23513712 | 2L | 10365118..10365190 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:00 has no hits.
BO18487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:20 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:08 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:43 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1002 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:21 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13139-RA | 1..807 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:59 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lft-RA | 199..1002 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:59 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
2L | 10365771..10366146 | 445..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:43 Download gff for
BO18487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10365490..10365680 | 254..444 | 100 | -> | Plus |
arm_2L | 10365118..10365190 | 17..89 | 100 | -> | Plus |
arm_2L | 10365265..10365428 | 90..253 | 100 | -> | Plus |
arm_2L | 10365771..10366146 | 445..822 | 99 | | Plus |
BO18487.pep Sequence
Translation from 16 to 838
> BO18487.pep
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDDASFLDH
BO18487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lft-PB | 268 | CG13139-PB | 1..268 | 1..268 | 1395 | 100 | Plus |
lft-PA | 268 | CG13139-PA | 1..268 | 1..268 | 1395 | 100 | Plus |