Clone Sequence Records
BO18489.3prime Sequence
752 bp (706 high quality bases) assembled on 2006-10-13
> BO18489.3prime
ATGGTCTAGAAAGCTTGCTTCGATGTTCTTCCGATAGAACAGGTACACGA
ATATATCATGAATGTCCGCGCGCCATCCCATCAATTCTATAAACGAGGCT
GTCGTCCACACATAGCCCATATATAGGGCAAAAAAGTTGAGGTAGTACAG
CTGGCCGATCAGTATGTAGTCCCCGGTCGACTCCTGGCGGTAGAAGTTCG
GCTTTCGCATGGAAGCGCCAAAGACTATGACAAACACGCTCGAGAGAATG
GTGTATACTAGCAGGGTTGGAAACTCTATGATAACACGCTTCATCTCGGC
ACACACGATGATGCCAAAGCAGGTGAGGACAAATATGCGCTCGCTCCACA
GGATAACCTTATGCCGGGTAGTGAAAAGGCCTTTCTTGTGTTTGATGGCA
CTATTTCCGTATATCACACTGATGATCATCATAAGGAATGTTAGGAAGAT
TGACAGGATGAGGCTTATATAAGGGGCACGTTTGGCGGGCTTCATGATCG
ACATGGTGTTCACCTCGTACGTCCAGAGGCCCGCCAATAACCGCACCCAC
ATAGGCTTTTTAACGATTATGTGGTAGAAAAATCCGTAGAGCTGGATGGA
TAGGAAGCTGACGACAAATTGCACGAGACTGAGGTAGTAGCGATCTGCGA
GAAATTCCTTCAGGGGAGTGATCTCCATCGCCACCGAGACCTGAATCTGT
CCGATGACGAGCATAATTATGGTTACTCTGTACGTGGGTCCCCACCCACT
CT
BO18489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 768 | CG12914-RA | 42..765 | 742..19 | 3620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 278..1006 | 748..19 | 3625 | 99.9 | Minus |
CG12914-RB | 1238 | CG12914-RB | 278..991 | 748..19 | 3390 | 97.8 | Minus |
CG12914-RC | 1251 | CG12914-RC | 253..1004 | 748..19 | 3385 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249157 | 235..19 | 1085 | 100 | Minus |
2R | 25286936 | 2R | 10248312..10248462 | 670..520 | 755 | 100 | Minus |
2R | 25286936 | 2R | 10248524..10248671 | 520..373 | 740 | 100 | Minus |
2R | 25286936 | 2R | 10248721..10248858 | 372..235 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10248163..10248244 | 752..671 | 365 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:49:22 has no hits.
BO18489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:40 Download gff for
BO18489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-PA | 32..768 | 16..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:04 Download gff for
BO18489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 273..1006 | 19..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:07 Download gff for
BO18489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 273..1006 | 19..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:07 Download gff for
BO18489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248525..10248671 | 373..519 | 100 | -> | Minus |
2R | 10248721..10248858 | 235..372 | 100 | -> | Minus |
2R | 10248942..10249157 | 19..234 | 100 | | Minus |
2R | 10248163..10248244 | 671..752 | 97 | -> | Minus |
2R | 10248312..10248462 | 520..670 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:04 Download gff for
BO18489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6135668..6135749 | 671..752 | 97 | -> | Minus |
arm_2R | 6135817..6135967 | 520..670 | 100 | -> | Minus |
arm_2R | 6136030..6136176 | 373..519 | 100 | -> | Minus |
arm_2R | 6136226..6136363 | 235..372 | 100 | -> | Minus |
arm_2R | 6136447..6136662 | 19..234 | 100 | | Minus |
BO18489.5prime Sequence
797 bp (767 high quality bases) assembled on 2006-10-13
> BO18489.5prime
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAAGCAAGCTTTCTAGACC
BO18489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 768 | CG12914-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 242..1006 | 17..781 | 3825 | 100 | Plus |
CG12914-RB | 1238 | CG12914-RB | 242..991 | 17..781 | 3590 | 98 | Plus |
CG12914-RC | 1251 | CG12914-RC | 217..1004 | 17..781 | 3585 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249157 | 565..781 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 10248312..10248462 | 130..280 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10248524..10248671 | 280..427 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10248721..10248858 | 428..565 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10248132..10248244 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:07:51 has no hits.
BO18489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:41 Download gff for
BO18489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:47 Download gff for
BO18489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1006 | 8..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:44 Download gff for
BO18489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1006 | 8..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:44 Download gff for
BO18489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248123..10248244 | 8..129 | 96 | -> | Plus |
2R | 10248312..10248462 | 130..280 | 100 | -> | Plus |
2R | 10248525..10248671 | 281..427 | 100 | -> | Plus |
2R | 10248721..10248858 | 428..565 | 100 | -> | Plus |
2R | 10248942..10249157 | 566..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:47 Download gff for
BO18489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6135628..6135749 | 8..129 | 96 | -> | Plus |
arm_2R | 6135817..6135967 | 130..280 | 100 | -> | Plus |
arm_2R | 6136030..6136176 | 281..427 | 100 | -> | Plus |
arm_2R | 6136226..6136363 | 428..565 | 100 | -> | Plus |
arm_2R | 6136447..6136662 | 566..781 | 100 | | Plus |
BO18489.complete Sequence
799 bp assembled on 2006-10-11
GenBank Submission: FJ634437
> BO18489.complete
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAAGCAAGCTTTCTAGACCAT
BO18489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 768 | CG12914-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG12914-RB | 753 | CG12914-PB | 1..750 | 17..781 | 3565 | 98 | Plus |
CG12914-RC | 582 | CG12914-PC | 1..550 | 17..566 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-RA | 1253 | CG12914-RA | 242..1006 | 17..781 | 3825 | 100 | Plus |
CG12914-RB | 1238 | CG12914-RB | 242..991 | 17..781 | 3565 | 98 | Plus |
CG12914-RC | 1251 | CG12914-RC | 217..766 | 17..566 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10248941..10249157 | 565..781 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 10248312..10248462 | 130..280 | 755 | 100 | Plus |
2R | 25286936 | 2R | 10248524..10248671 | 280..427 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10248721..10248858 | 428..565 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10248132..10248244 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:05 has no hits.
BO18489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:22 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:10 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1006 | 8..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:20 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 247..1006 | 22..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:23 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 233..1006 | 8..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:33 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12914-RA | 247..1006 | 22..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:33 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10248137..10248244 | 22..129 | 100 | -> | Plus |
2R | 10248312..10248462 | 130..280 | 100 | -> | Plus |
2R | 10248525..10248671 | 281..427 | 100 | -> | Plus |
2R | 10248721..10248858 | 428..565 | 100 | -> | Plus |
2R | 10248942..10249157 | 566..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:20 Download gff for
BO18489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6135642..6135749 | 22..129 | 100 | -> | Plus |
arm_2R | 6135817..6135967 | 130..280 | 100 | -> | Plus |
arm_2R | 6136030..6136176 | 281..427 | 100 | -> | Plus |
arm_2R | 6136226..6136363 | 428..565 | 100 | -> | Plus |
arm_2R | 6136447..6136662 | 566..783 | 99 | | Plus |
BO18489.pep Sequence
Translation from 16 to 799
> BO18489.pep
MLRENPPPRQKSWVGPTYRVTIIMLVIGQIQVSVAMEITPLKEFLADRYY
LSLVQFVVSFLSIQLYGFFYHIIVKKPMWVRLLAGLWTYEVNTMSIMKPA
KRAPYISLILSIFLTFLMMIISVIYGNSAIKHKKGLFTTRHKVILWSERI
FVLTCFGIIVCAEMKRVIIEFPTLLVYTILSSVFVIVFGASMRKPNFYRQ
ESTGDYILIGQLYYLNFFALYMGYVWTTASFIELMGWRADIHDIFVYLFY
RKNIEASFLDH
BO18489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12914-PA | 255 | CG12914-PA | 1..255 | 1..255 | 1320 | 100 | Plus |
CG12914-PB | 250 | CG12914-PB | 1..250 | 1..255 | 1276 | 98 | Plus |
CG12914-PC | 193 | CG12914-PC | 1..192 | 1..192 | 938 | 96.4 | Plus |