Clone BO18489 Report

Search the DGRC for BO18489

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12914-RA
Protein status:BO18489.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO18489.3prime Sequence

752 bp (706 high quality bases) assembled on 2006-10-13

> BO18489.3prime
ATGGTCTAGAAAGCTTGCTTCGATGTTCTTCCGATAGAACAGGTACACGA
ATATATCATGAATGTCCGCGCGCCATCCCATCAATTCTATAAACGAGGCT
GTCGTCCACACATAGCCCATATATAGGGCAAAAAAGTTGAGGTAGTACAG
CTGGCCGATCAGTATGTAGTCCCCGGTCGACTCCTGGCGGTAGAAGTTCG
GCTTTCGCATGGAAGCGCCAAAGACTATGACAAACACGCTCGAGAGAATG
GTGTATACTAGCAGGGTTGGAAACTCTATGATAACACGCTTCATCTCGGC
ACACACGATGATGCCAAAGCAGGTGAGGACAAATATGCGCTCGCTCCACA
GGATAACCTTATGCCGGGTAGTGAAAAGGCCTTTCTTGTGTTTGATGGCA
CTATTTCCGTATATCACACTGATGATCATCATAAGGAATGTTAGGAAGAT
TGACAGGATGAGGCTTATATAAGGGGCACGTTTGGCGGGCTTCATGATCG
ACATGGTGTTCACCTCGTACGTCCAGAGGCCCGCCAATAACCGCACCCAC
ATAGGCTTTTTAACGATTATGTGGTAGAAAAATCCGTAGAGCTGGATGGA
TAGGAAGCTGACGACAAATTGCACGAGACTGAGGTAGTAGCGATCTGCGA
GAAATTCCTTCAGGGGAGTGATCTCCATCGCCACCGAGACCTGAATCTGT
CCGATGACGAGCATAATTATGGTTACTCTGTACGTGGGTCCCCACCCACT
CT

BO18489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 768 CG12914-RA 42..765 742..19 3620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 278..1006 748..19 3625 99.9 Minus
CG12914-RB 1238 CG12914-RB 278..991 748..19 3390 97.8 Minus
CG12914-RC 1251 CG12914-RC 253..1004 748..19 3385 96.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249157 235..19 1085 100 Minus
2R 25286936 2R 10248312..10248462 670..520 755 100 Minus
2R 25286936 2R 10248524..10248671 520..373 740 100 Minus
2R 25286936 2R 10248721..10248858 372..235 690 100 Minus
2R 25286936 2R 10248163..10248244 752..671 365 96.3 Minus
Blast to na_te.dros performed on 2015-02-12 17:49:22 has no hits.

BO18489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:40 Download gff for BO18489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-PA 32..768 16..752 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:04 Download gff for BO18489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 273..1006 19..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:07 Download gff for BO18489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 273..1006 19..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:07 Download gff for BO18489.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10248525..10248671 373..519 100 -> Minus
2R 10248721..10248858 235..372 100 -> Minus
2R 10248942..10249157 19..234 100   Minus
2R 10248163..10248244 671..752 97 -> Minus
2R 10248312..10248462 520..670 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:04 Download gff for BO18489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6135668..6135749 671..752 97 -> Minus
arm_2R 6135817..6135967 520..670 100 -> Minus
arm_2R 6136030..6136176 373..519 100 -> Minus
arm_2R 6136226..6136363 235..372 100 -> Minus
arm_2R 6136447..6136662 19..234 100   Minus

BO18489.5prime Sequence

797 bp (767 high quality bases) assembled on 2006-10-13

> BO18489.5prime
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAAGCAAGCTTTCTAGACC

BO18489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 768 CG12914-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 242..1006 17..781 3825 100 Plus
CG12914-RB 1238 CG12914-RB 242..991 17..781 3590 98 Plus
CG12914-RC 1251 CG12914-RC 217..1004 17..781 3585 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249157 565..781 1085 100 Plus
2R 25286936 2R 10248312..10248462 130..280 755 100 Plus
2R 25286936 2R 10248524..10248671 280..427 740 100 Plus
2R 25286936 2R 10248721..10248858 428..565 690 100 Plus
2R 25286936 2R 10248132..10248244 17..129 565 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:07:51 has no hits.

BO18489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:41 Download gff for BO18489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:47 Download gff for BO18489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1006 8..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:44 Download gff for BO18489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1006 8..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:44 Download gff for BO18489.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10248123..10248244 8..129 96 -> Plus
2R 10248312..10248462 130..280 100 -> Plus
2R 10248525..10248671 281..427 100 -> Plus
2R 10248721..10248858 428..565 100 -> Plus
2R 10248942..10249157 566..781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:47 Download gff for BO18489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6135628..6135749 8..129 96 -> Plus
arm_2R 6135817..6135967 130..280 100 -> Plus
arm_2R 6136030..6136176 281..427 100 -> Plus
arm_2R 6136226..6136363 428..565 100 -> Plus
arm_2R 6136447..6136662 566..781 100   Plus

BO18489.complete Sequence

799 bp assembled on 2006-10-11

GenBank Submission: FJ634437

> BO18489.complete
GAAGTTATCAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGA
GTTGGGTGGGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGA
CAGATTCAGGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCT
CGCAGATCGCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTAT
CCATCCAGCTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATG
TGGGTGCGGTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTC
GATCATGAAGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAA
TCTTCCTAACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGT
GCCATCAAACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCT
GTGGAGCGAGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTG
CCGAGATGAAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACC
ATTCTCTCGAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCC
GAACTTCTACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGC
TGTACTACCTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACA
GCCTCGTTTATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATT
CGTGTACCTGTTCTATCGGAAGAACATCGAAGCAAGCTTTCTAGACCAT

BO18489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 768 CG12914-PA 1..765 17..781 3825 100 Plus
CG12914-RB 753 CG12914-PB 1..750 17..781 3565 98 Plus
CG12914-RC 582 CG12914-PC 1..550 17..566 2750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-RA 1253 CG12914-RA 242..1006 17..781 3825 100 Plus
CG12914-RB 1238 CG12914-RB 242..991 17..781 3565 98 Plus
CG12914-RC 1251 CG12914-RC 217..766 17..566 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10248941..10249157 565..781 1085 100 Plus
2R 25286936 2R 10248312..10248462 130..280 755 100 Plus
2R 25286936 2R 10248524..10248671 280..427 740 100 Plus
2R 25286936 2R 10248721..10248858 428..565 690 100 Plus
2R 25286936 2R 10248132..10248244 17..129 565 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:05 has no hits.

BO18489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:22 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:10 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1006 8..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:20 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 247..1006 22..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:23 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 233..1006 8..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:33 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
CG12914-RA 247..1006 22..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:33 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10248137..10248244 22..129 100 -> Plus
2R 10248312..10248462 130..280 100 -> Plus
2R 10248525..10248671 281..427 100 -> Plus
2R 10248721..10248858 428..565 100 -> Plus
2R 10248942..10249157 566..783 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:20 Download gff for BO18489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6135642..6135749 22..129 100 -> Plus
arm_2R 6135817..6135967 130..280 100 -> Plus
arm_2R 6136030..6136176 281..427 100 -> Plus
arm_2R 6136226..6136363 428..565 100 -> Plus
arm_2R 6136447..6136662 566..783 99   Plus

BO18489.pep Sequence

Translation from 16 to 799

> BO18489.pep
MLRENPPPRQKSWVGPTYRVTIIMLVIGQIQVSVAMEITPLKEFLADRYY
LSLVQFVVSFLSIQLYGFFYHIIVKKPMWVRLLAGLWTYEVNTMSIMKPA
KRAPYISLILSIFLTFLMMIISVIYGNSAIKHKKGLFTTRHKVILWSERI
FVLTCFGIIVCAEMKRVIIEFPTLLVYTILSSVFVIVFGASMRKPNFYRQ
ESTGDYILIGQLYYLNFFALYMGYVWTTASFIELMGWRADIHDIFVYLFY
RKNIEASFLDH

BO18489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12914-PA 255 CG12914-PA 1..255 1..255 1320 100 Plus
CG12914-PB 250 CG12914-PB 1..250 1..255 1276 98 Plus
CG12914-PC 193 CG12914-PC 1..192 1..192 938 96.4 Plus