Clone Sequence Records
BO18491.3prime Sequence
775 bp (731 high quality bases) assembled on 2006-10-13
> BO18491.3prime
ATGGTCTAGAAAGCTTGCGTAGTCCTCGTCACTGGACTCCTCCTGCTGAC
TGTGAGCATCTGCCTCGACATATCCTTCCTCGCTGCTGCCCTCGTACTCC
TGGTGACCGCCACCCTCCTCGTCCTCCTCCGCCTGCTCGTCCTTTCCCTC
ATCGTAATCCTCGTGCACTTGGTACTGGCCATTCCCCTGGTGCTCCCGCT
CCCGTTCATCCTCCTCCTCATCATCCTCCTTCGCTTTGTGGGCCTCGGCG
CTATGGTGCCTCACCTGGCTGTCCACCGACCCGCCACCCGCATCCCCGTC
GGAACCGTGGCCGTGCAGAGTTTTCACACCATTGGTAATGACCTCGGCTT
GGAAGCCGTTGGCATCGTCGGCCGTGTATTTAACCACACGCAAGGTGCCA
TCCGGATCGACTACGCTGTACACTCCTCTCACCTCGTCCCCGTTGCGCGT
CTCCTTGCGATTCTGCAGCACGCGCGTCTTGCCATCCTCGACTCCATAGG
CGAAGCTGTACTCGGGACGGGCCACATAGTCCACGGTGCGTCCGTCGTGG
ACGGTGACCAGATGCTCCGGCCCCACCACCGGACCCTCGAATCTTGCATA
GGAGTAGCCAACCGCTGCGCATGCACCGATCATTCCGCATCCAGCAATTA
GCGCCAAACAGTGGCAACAAATCTTTGAGTTGCCGCACCGCCTGGCCGAA
GCGTGCCTCTCTTCGCAACGCAATGCGGAAGCGCCAGCGAGTTGAAGTCC
GTGCTTTTGGTCCAACGCCAGGTCC
BO18491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 801 | CG13670-RA | 160..798 | 657..19 | 3195 | 100 | Minus |
CG13670-PA | 801 | CG13670-RA | 43..161 | 775..657 | 595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 116..871 | 775..19 | 3760 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8321792..8322191 | 418..19 | 2000 | 100 | Minus |
3L | 28110227 | 3L | 8320878..8321236 | 775..416 | 1750 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:48 has no hits.
BO18491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:42 Download gff for
BO18491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-PA | 43..801 | 18..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:06 Download gff for
BO18491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 116..878 | 10..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:29 Download gff for
BO18491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 116..878 | 10..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:29 Download gff for
BO18491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8320878..8321236 | 416..775 | 99 | -> | Minus |
3L | 8321795..8322198 | 10..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:06 Download gff for
BO18491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313978..8314336 | 416..775 | 99 | -> | Minus |
arm_3L | 8314895..8315298 | 10..415 | 99 | | Minus |
BO18491.5prime Sequence
830 bp (730 high quality bases) assembled on 2006-10-13
> BO18491.5prime
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAATACGAGGGCAGCAG
CGAGGAAAGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACGCAAGCTTTCTAGACC
BO18491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 801 | CG13670-RA | 1..798 | 17..814 | 3940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 74..871 | 17..814 | 3960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8320836..8321236 | 17..417 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 8321792..8322191 | 415..814 | 1970 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:00:16 has no hits.
BO18491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:42 Download gff for
BO18491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-PA | 1..801 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:59 Download gff for
BO18491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..823 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:22 Download gff for
BO18491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..823 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:22 Download gff for
BO18491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8320830..8321236 | 10..417 | 99 | -> | Plus |
3L | 8321795..8322198 | 418..823 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:59 Download gff for
BO18491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313930..8314336 | 10..417 | 99 | -> | Plus |
arm_3L | 8314895..8315298 | 418..823 | 98 | | Plus |
BO18491.complete Sequence
832 bp assembled on 2006-10-11
GenBank Submission: FJ634438
> BO18491.complete
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAGTACGAGGGCAGCAG
CGAGGAAGGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACGCAAGCTTTCTAGACCAT
BO18491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 801 | CG13670-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-RA | 960 | CG13670-RA | 74..871 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8320836..8321236 | 17..417 | 2005 | 100 | Plus |
3L | 28110227 | 3L | 8321792..8322191 | 415..814 | 2000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:22:53 has no hits.
BO18491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:23 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 1..801 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:11 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:29 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 74..871 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:24 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 68..878 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:51 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13670-RA | 74..871 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:51 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8320836..8321236 | 17..417 | 100 | -> | Plus |
3L | 8321795..8322191 | 418..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:29 Download gff for
BO18491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8313936..8314336 | 17..417 | 100 | -> | Plus |
arm_3L | 8314895..8315291 | 418..816 | 99 | | Plus |
BO18491.pep Sequence
Translation from 16 to 832
> BO18491.pep
MKKRRITSTAGDANGPGVGPKARTSTRWRFRIALRREARFGQAVRQLKDL
LPLLALIAGCGMIGACAAVGYSYARFEGPVVGPEHLVTVHDGRTVDYVAR
PEYSFAYGVEDGKTRVLQNRKETRNGDEVRGVYSVVDPDGTLRVVKYTAD
DANGFQAEVITNGVKTLHGHGSDGDAGGGSVDSQVRHHSAEAHKAKEDDE
EEDEREREHQGNGQYQVHEDYDEGKDEQAEEDEEGGGHQEYEGSSEEGYV
EADAHSQQEESSDEDYASFLDH
BO18491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13670-PA | 266 | CG13670-PA | 1..266 | 1..266 | 1405 | 100 | Plus |
Cpr62Bb-PC | 194 | CG13935-PC | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bb-PB | 194 | CG13935-PB | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bb-PA | 194 | CG13935-PA | 24..181 | 92..243 | 199 | 31.4 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 41..119 | 90..168 | 192 | 46.8 | Plus |