Clone BO18491 Report

Search the DGRC for BO18491

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG13670-RA
Protein status:BO18491.pep: validated full length
Sequenced Size:832

Clone Sequence Records

BO18491.3prime Sequence

775 bp (731 high quality bases) assembled on 2006-10-13

> BO18491.3prime
ATGGTCTAGAAAGCTTGCGTAGTCCTCGTCACTGGACTCCTCCTGCTGAC
TGTGAGCATCTGCCTCGACATATCCTTCCTCGCTGCTGCCCTCGTACTCC
TGGTGACCGCCACCCTCCTCGTCCTCCTCCGCCTGCTCGTCCTTTCCCTC
ATCGTAATCCTCGTGCACTTGGTACTGGCCATTCCCCTGGTGCTCCCGCT
CCCGTTCATCCTCCTCCTCATCATCCTCCTTCGCTTTGTGGGCCTCGGCG
CTATGGTGCCTCACCTGGCTGTCCACCGACCCGCCACCCGCATCCCCGTC
GGAACCGTGGCCGTGCAGAGTTTTCACACCATTGGTAATGACCTCGGCTT
GGAAGCCGTTGGCATCGTCGGCCGTGTATTTAACCACACGCAAGGTGCCA
TCCGGATCGACTACGCTGTACACTCCTCTCACCTCGTCCCCGTTGCGCGT
CTCCTTGCGATTCTGCAGCACGCGCGTCTTGCCATCCTCGACTCCATAGG
CGAAGCTGTACTCGGGACGGGCCACATAGTCCACGGTGCGTCCGTCGTGG
ACGGTGACCAGATGCTCCGGCCCCACCACCGGACCCTCGAATCTTGCATA
GGAGTAGCCAACCGCTGCGCATGCACCGATCATTCCGCATCCAGCAATTA
GCGCCAAACAGTGGCAACAAATCTTTGAGTTGCCGCACCGCCTGGCCGAA
GCGTGCCTCTCTTCGCAACGCAATGCGGAAGCGCCAGCGAGTTGAAGTCC
GTGCTTTTGGTCCAACGCCAGGTCC

BO18491.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-PA 801 CG13670-RA 160..798 657..19 3195 100 Minus
CG13670-PA 801 CG13670-RA 43..161 775..657 595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-RA 960 CG13670-RA 116..871 775..19 3760 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8321792..8322191 418..19 2000 100 Minus
3L 28110227 3L 8320878..8321236 775..416 1750 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:13:48 has no hits.

BO18491.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:42 Download gff for BO18491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-PA 43..801 18..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:06 Download gff for BO18491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 116..878 10..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:29 Download gff for BO18491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 116..878 10..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:29 Download gff for BO18491.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8320878..8321236 416..775 99 -> Minus
3L 8321795..8322198 10..415 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:06 Download gff for BO18491.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8313978..8314336 416..775 99 -> Minus
arm_3L 8314895..8315298 10..415 99   Minus

BO18491.5prime Sequence

830 bp (730 high quality bases) assembled on 2006-10-13

> BO18491.5prime
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAATACGAGGGCAGCAG
CGAGGAAAGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACGCAAGCTTTCTAGACC

BO18491.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-PA 801 CG13670-RA 1..798 17..814 3940 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-RA 960 CG13670-RA 74..871 17..814 3960 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8320836..8321236 17..417 2005 100 Plus
3L 28110227 3L 8321792..8322191 415..814 1970 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 17:00:16 has no hits.

BO18491.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:42 Download gff for BO18491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-PA 1..801 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:59 Download gff for BO18491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 68..878 10..823 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:22 Download gff for BO18491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 68..878 10..823 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:22 Download gff for BO18491.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8320830..8321236 10..417 99 -> Plus
3L 8321795..8322198 418..823 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:59 Download gff for BO18491.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8313930..8314336 10..417 99 -> Plus
arm_3L 8314895..8315298 418..823 98   Plus

BO18491.complete Sequence

832 bp assembled on 2006-10-11

GenBank Submission: FJ634438

> BO18491.complete
GAAGTTATCAGTCGACATGAAGAAGCGACGCATAACCAGCACAGCTGGAG
ATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGG
CGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGGCGGTGCG
GCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAA
TGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGT
CCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGT
GGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTCGAGGATG
GCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAG
GTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGCGTGTGGT
TAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCA
ATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGC
GGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCCACAAAGC
GAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGA
ATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAG
GCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAGTACGAGGGCAGCAG
CGAGGAAGGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAGGAGTCCA
GTGACGAGGACTACGCAAGCTTTCTAGACCAT

BO18491.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-RA 801 CG13670-PA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-RA 960 CG13670-RA 74..871 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8320836..8321236 17..417 2005 100 Plus
3L 28110227 3L 8321792..8322191 415..814 2000 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:22:53 has no hits.

BO18491.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:23 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:11 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 68..878 10..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:29 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 74..871 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:24 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 68..878 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:51 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 74..871 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:51 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8320836..8321236 17..417 100 -> Plus
3L 8321795..8322191 418..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:29 Download gff for BO18491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8313936..8314336 17..417 100 -> Plus
arm_3L 8314895..8315291 418..816 99   Plus

BO18491.pep Sequence

Translation from 16 to 832

> BO18491.pep
MKKRRITSTAGDANGPGVGPKARTSTRWRFRIALRREARFGQAVRQLKDL
LPLLALIAGCGMIGACAAVGYSYARFEGPVVGPEHLVTVHDGRTVDYVAR
PEYSFAYGVEDGKTRVLQNRKETRNGDEVRGVYSVVDPDGTLRVVKYTAD
DANGFQAEVITNGVKTLHGHGSDGDAGGGSVDSQVRHHSAEAHKAKEDDE
EEDEREREHQGNGQYQVHEDYDEGKDEQAEEDEEGGGHQEYEGSSEEGYV
EADAHSQQEESSDEDYASFLDH

BO18491.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-PA 266 CG13670-PA 1..266 1..266 1405 100 Plus
Cpr62Bb-PC 194 CG13935-PC 24..181 92..243 199 31.4 Plus
Cpr62Bb-PB 194 CG13935-PB 24..181 92..243 199 31.4 Plus
Cpr62Bb-PA 194 CG13935-PA 24..181 92..243 199 31.4 Plus
Cpr62Bc-PB 180 CG1919-PB 41..119 90..168 192 46.8 Plus