Clone Sequence Records
BO18492.3prime Sequence
748 bp (696 high quality bases) assembled on 2006-10-13
> BO18492.3prime
ATGGTCTAGAAAGCTTGCAAACAAATACTGTATATACTCCACGGCCTGCT
CCAGTGCTCTGGGCTCCCCATCGGCATCGAAGTCAATTAGCTCCGGCTGC
CTGTTTCGGGCGATGTATCGCAGGTAGCCACGTGTGCTCTCCATTCGCAC
CGACAACTTAATATCCCAGCCATCGCGACGTGGCGATGTGAAGATGGTGG
AGCCGTGACAGTTGACCATCTGCAGCCAACGGGTGAAGCCCACGCCCAGG
TAGTTATTCGCCTTGTCTACGATCACAATGGGCAGATCCTCGCTGGCCAG
CAGGCGGATCAGCTTGCGCAGCATCCTCTTCTGAATGGGCCAGTAGTAGC
AGGCAGGATCATATAGCATCACCAGCATATCGCTGCTGCTCTCTTCCCGC
AACTCAAAGTAATTCATTGGCTTGGAGTCCAGTGAGGCAGTGGCGCCCAG
GACTACGGCACGGAAGAGTTGATCCGCCAGCAACTGGTCGCAAAACTCCC
TCAGGTATTTGGCGTTGACCAGCTTGTGCATATCGTACACTCGGCCCTCA
CAGTCCTTGCCATAGATTCGCGGTGGCAATCCCTTCCGGTAGCTGCCAAA
GTCGTCGGGATTTAGGTTCGGATTGAACTCCCCGATGTTGGAGATGTCAC
GCAATCCGAACAATATACGACCGGCGTACTCCTGTGCCAACTCATCGAGC
AGACTTATCCACTTGTCCAACGTGTCTCCGTGCCGGTTCTTAACAAAG
BO18492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-PA | 870 | CG14695-RA | 138..867 | 748..19 | 3650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-RA | 1116 | CG14695-RA | 184..913 | 748..19 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10878407..10879136 | 19..748 | 3650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:45 has no hits.
BO18492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:43 Download gff for
BO18492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-PA | 138..870 | 18..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:14:00 Download gff for
BO18492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 184..921 | 11..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:09 Download gff for
BO18492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 184..921 | 11..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:09 Download gff for
BO18492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10878399..10879136 | 11..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:14:00 Download gff for
BO18492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6704121..6704858 | 11..748 | 99 | | Plus |
BO18492.5prime Sequence
839 bp (768 high quality bases) assembled on 2006-10-13
> BO18492.5prime
GAAGTTATCAGTCGACATGGCTCTTGTGAAGACGTACACCATCGACAATA
ACTCCATTCCATGGATTCTGTGGCTACCGCCATTAACGGAAGTGGATAGG
AAATCGCCGGGTGGGAGGTTCACATTTGATGGGCCAAAGGTGGTGGCGTT
TCACTTTGTTAAGAACCGGCACGGAGACACGTTGGACAAGTGGATAAGTC
TGCTCGATGAGTTGGCACAGGAGTACGCCGGTCGTATATTGTTCGGATTG
CGTGACATCTCCAACATCGGGGAGTTCAATCCGAACCTAAATCCCGACGA
CTTTGGCAGCTACCGGAAGGGATTGCCACCGCGAATCTATGGCAAGGACT
GTGAGGGCCGAGTGTACGATATGCACAAGCTGGTCAACGCCAAATACCTG
AGGGAGTTTTGCGACCAGTTGCTGGCGGATCAACTCTTCCGTGCCGTAGT
CCTGGGCGCCACTGCCTCACTGGACTCCAAGCCAATGAATTACTTTGAGT
TGCGGGAAGAGAGCAGCAGCGATATGCTGGTGATGCTATATGATCCTGCC
TGCTACTACTGGCCCATTCAGAAGAGGATGCTGCGCAAGCTGATCCGCCT
GCTGGCCAGCGAGGATCTGCCCATTGTGATCGTAGACAAGGCGAATAACT
ACCTGGGCGTGGGCTTCACCCGTTGGCTGCAGATGGTCAACTGTCACGGC
TCCACCATCTTCACATCGCCACGTCGCGATGGCTGGGATATTAAGTTGTC
GGTGCGAATGGAGAGCACACGTGGCTACCTGCGATACATCGCCCGAAACA
GGCAGCCGGAGCTAATTGACTTCGATGCCGATGGGGAGC
BO18492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-PA | 870 | CG14695-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-RA | 1116 | CG14695-RA | 47..869 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10878451..10879273 | 839..17 | 4115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:14:10 has no hits.
BO18492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:43 Download gff for
BO18492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:46:10 Download gff for
BO18492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 40..869 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:05 Download gff for
BO18492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 40..869 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:05 Download gff for
BO18492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10878451..10879278 | 10..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:46:10 Download gff for
BO18492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6704173..6705000 | 10..839 | 99 | | Minus |
BO18492.complete Sequence
901 bp assembled on 2006-10-11
GenBank Submission: FJ634439
> BO18492.complete
GAAGTTATCAGTCGACATGGCTCTTGTGAAGACGTACACCATCGACAATA
ACTCCATTCCATGGATTCTGTGGCTACCGCCATTAACGGAAGTGGATAGG
AAATCGCCGGGTGGGAGGTTCACATTTGATGGGCCAAAGGTGGTGGCGTT
TCACTTTGTTAAGAACCGGCACGGAGACACGTTGGACAAGTGGATAAGTC
TGCTCGATGAGTTGGCACAGGAGTACGCCGGTCGTATATTGTTCGGATTG
CGTGACATCTCCAACATCGGGGAGTTCAATCCGAACCTAAATCCCGACGA
CTTTGGCAGCTACCGGAAGGGATTGCCACCGCGAATCTATGGCAAGGACT
GTGAGGGCCGAGTGTACGATATGCACAAGCTGGTCAACGCCAAATACCTG
AGGGAGTTTTGCGACCAGTTGCTGGCGGATCAACTCTTCCGTGCCGTAGT
CCTGGGCGCCACTGCCTCACTGGACTCCAAGCCAATGAATTACTTTGAGT
TGCGGGAAGAGAGCAGCAGCGATATGCTGGTGATGCTATATGATCCTGCC
TGCTACTACTGGCCCATTCAGAAGAGGATGCTGCGCAAGCTGATCCGCCT
GCTGGCCAGCGAGGATCTGCCCATTGTGATCGTAGACAAGGCGAATAACT
ACCTGGGCGTGGGCTTCACCCGTTGGCTGCAGATGGTCAACTGTCACGGC
TCCACCATCTTCACATCGCCACGTCGCGATGGCTGGGATATTAAGTTGTC
GGTGCGAATGGAGAGCACACGTGGCTACCTGCGATACATCGCCCGAAACA
GGCAGCCGGAGCTAATTGACTTCGATGCCGATGGGGAGCCCAGAGCACTG
GAGCAGGCCGTGGAGTATATACAGTATTTGTTTGCAAGCTTTCTAGACCA
T
BO18492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-RA | 870 | CG14695-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-RA | 1116 | CG14695-RA | 47..913 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10878407..10879273 | 883..17 | 4335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:28 has no hits.
BO18492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:25 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:13 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:55 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 47..913 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:25 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:01 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14695-RA | 47..913 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:01 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10878405..10879273 | 17..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:55 Download gff for
BO18492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6704127..6704995 | 17..885 | 99 | | Minus |
BO18492.pep Sequence
Translation from 16 to 901
> BO18492.pep
MALVKTYTIDNNSIPWILWLPPLTEVDRKSPGGRFTFDGPKVVAFHFVKN
RHGDTLDKWISLLDELAQEYAGRILFGLRDISNIGEFNPNLNPDDFGSYR
KGLPPRIYGKDCEGRVYDMHKLVNAKYLREFCDQLLADQLFRAVVLGATA
SLDSKPMNYFELREESSSDMLVMLYDPACYYWPIQKRMLRKLIRLLASED
LPIVIVDKANNYLGVGFTRWLQMVNCHGSTIFTSPRRDGWDIKLSVRMES
TRGYLRYIARNRQPELIDFDADGEPRALEQAVEYIQYLFASFLDH
BO18492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14695-PA | 289 | CG14695-PA | 1..289 | 1..289 | 1541 | 100 | Plus |
