Clone Sequence Records
BO18493.3prime Sequence
806 bp (697 high quality bases) assembled on 2006-10-13
> BO18493.3prime
ATGGTCTAGAAAGCTTGCCAACGAGTCAGTGGTGTCAACGATCCAGCTCC
TCAGGCTGGCGACATCGGCATAGACGCCGGGGTAGCCGGTCCAGGCACAT
CCGCTGCCCCAGGAAACCACGCCCACAAGCTTGTTGTCCGCGACCAAAGG
ACCACCGGAGTCACCCTGGCAGGCGTCCTTCTTCTCGCCGGTGGCACAGA
CCATGGTCTCCAGAATCGAGTCGCTGCCGTAGTTGTACGTGTCGGCGGCA
CAGTCCTTGTAGTGCAGCAGATCAACCTCCACCTTCTGAAGGGTGTCGGG
GGAGGAGCAGAAAAGGAAGCAGGTGGTGCCCCAGCCGGAGACCACGGCAT
TGGTTCCGGAAACGGCCTCGGAGTCGGCCAGTTCGATGGCCCGGATCTTA
GAGGTCTGGCGAACGGGAGAGCTCAGCTTGATGATGGCCACATCGTTGAT
CATCAACTTGCTGTTGTAGCCCTCGTGGTACTTGAAGGCGCGGACGGTGA
CCACCTCACCACCGGAGCTCCTGGAAGTGGAACCCACTCGCACCTGCAGC
TCGCTGGCGGCGTAGGATTGCATGCAATGGGCGGCGGTCAGGACGGTCTC
CGAATCGATCAGACTTCCGCCACAGAAGTGGGAGCCCTTGGTCGTCTGGA
CGGACACCTGGTAGGGGTAGTTTTCGATATCCACGTCCTCGCCGTTCACA
ATCCGACCGAAGGGGAAGTCCAGTCCCGGATTTCCATGGCAGGAAGCAGC
CAGGGCGACCAGCGCCACCACACTCAATAGCAAACGATTCATGTCGACTG
ATAACT
BO18493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-PA | 777 | CG17571-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-RB | 1205 | CG17571-RB | 263..1036 | 792..19 | 3870 | 100 | Minus |
CG17571-RA | 965 | CG17571-RA | 23..796 | 792..19 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20256157..20256930 | 19..792 | 3870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:04:38 has no hits.
BO18493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:44 Download gff for
BO18493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:32 Download gff for
BO18493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 15..799 | 15..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:19 Download gff for
BO18493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 15..799 | 15..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:19 Download gff for
BO18493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20256153..20256938 | 15..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:32 Download gff for
BO18493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20256153..20256938 | 15..800 | 99 | | Plus |
BO18493.5prime Sequence
804 bp (757 high quality bases) assembled on 2006-10-13
> BO18493.5prime
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGGTGGCAAACTTTC
TAGA
BO18493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-PA | 777 | CG17571-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-RB | 1205 | CG17571-RB | 263..1033 | 17..787 | 3855 | 100 | Plus |
CG17571-RA | 965 | CG17571-RA | 23..793 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20256160..20256930 | 787..17 | 3855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:05:05 has no hits.
BO18493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:45 Download gff for
BO18493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:37 Download gff for
BO18493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 15..800 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:21 Download gff for
BO18493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 15..800 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:21 Download gff for
BO18493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20256153..20256938 | 9..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:37 Download gff for
BO18493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20256153..20256938 | 9..795 | 99 | | Minus |
BO18493.complete Sequence
808 bp assembled on 2006-10-11
GenBank Submission: FJ634440
> BO18493.complete
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGTTGGCAAGCTTTC
TAGACCAT
BO18493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-RB | 777 | CG17571-PB | 1..774 | 17..790 | 3870 | 100 | Plus |
CG17571-RA | 777 | CG17571-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-RB | 1205 | CG17571-RB | 263..1036 | 17..790 | 3870 | 100 | Plus |
CG17571-RA | 965 | CG17571-RA | 23..796 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20256157..20256930 | 790..17 | 3870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:53:44 has no hits.
BO18493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:33 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:54 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 98..882 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:43 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 23..796 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:33 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 98..882 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:33 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17571-RA | 23..796 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:33 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20256155..20256930 | 17..792 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:43 Download gff for
BO18493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20256155..20256930 | 17..792 | 99 | | Minus |
BO18493.pep Sequence
Translation from 16 to 808
> BO18493.pep
MNRLLLSVVALVALAASCHGNPGLDFPFGRIVNGEDVDIENYPYQVSVQT
TKGSHFCGGSLIDSETVLTAAHCMQSYAASELQVRVGSTSRSSGGEVVTV
RAFKYHEGYNSKLMINDVAIIKLSSPVRQTSKIRAIELADSEAVSGTNAV
VSGWGTTCFLFCSSPDTLQKVEVDLLHYKDCAADTYNYGSDSILETMVCA
TGEKKDACQGDSGGPLVADNKLVGVVSWGSGCAWTGYPGVYADVASLRSW
IVDTTDSLASFLDH
BO18493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17571-PB | 258 | CG17571-PB | 1..258 | 1..258 | 1345 | 100 | Plus |
CG17571-PA | 258 | CG17571-PA | 1..258 | 1..258 | 1345 | 100 | Plus |
thetaTry-PA | 262 | CG12385-PA | 1..262 | 1..258 | 666 | 51.9 | Plus |
alphaTry-PA | 256 | CG18444-PA | 1..256 | 4..258 | 644 | 51.3 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..251 | 4..253 | 634 | 50.8 | Plus |