Clone BO18493 Report

Search the DGRC for BO18493

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:184
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG17571-RA
Protein status:BO18493.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO18493.3prime Sequence

806 bp (697 high quality bases) assembled on 2006-10-13

> BO18493.3prime
ATGGTCTAGAAAGCTTGCCAACGAGTCAGTGGTGTCAACGATCCAGCTCC
TCAGGCTGGCGACATCGGCATAGACGCCGGGGTAGCCGGTCCAGGCACAT
CCGCTGCCCCAGGAAACCACGCCCACAAGCTTGTTGTCCGCGACCAAAGG
ACCACCGGAGTCACCCTGGCAGGCGTCCTTCTTCTCGCCGGTGGCACAGA
CCATGGTCTCCAGAATCGAGTCGCTGCCGTAGTTGTACGTGTCGGCGGCA
CAGTCCTTGTAGTGCAGCAGATCAACCTCCACCTTCTGAAGGGTGTCGGG
GGAGGAGCAGAAAAGGAAGCAGGTGGTGCCCCAGCCGGAGACCACGGCAT
TGGTTCCGGAAACGGCCTCGGAGTCGGCCAGTTCGATGGCCCGGATCTTA
GAGGTCTGGCGAACGGGAGAGCTCAGCTTGATGATGGCCACATCGTTGAT
CATCAACTTGCTGTTGTAGCCCTCGTGGTACTTGAAGGCGCGGACGGTGA
CCACCTCACCACCGGAGCTCCTGGAAGTGGAACCCACTCGCACCTGCAGC
TCGCTGGCGGCGTAGGATTGCATGCAATGGGCGGCGGTCAGGACGGTCTC
CGAATCGATCAGACTTCCGCCACAGAAGTGGGAGCCCTTGGTCGTCTGGA
CGGACACCTGGTAGGGGTAGTTTTCGATATCCACGTCCTCGCCGTTCACA
ATCCGACCGAAGGGGAAGTCCAGTCCCGGATTTCCATGGCAGGAAGCAGC
CAGGGCGACCAGCGCCACCACACTCAATAGCAAACGATTCATGTCGACTG
ATAACT

BO18493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-PA 777 CG17571-RA 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-RB 1205 CG17571-RB 263..1036 792..19 3870 100 Minus
CG17571-RA 965 CG17571-RA 23..796 792..19 3870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20256157..20256930 19..792 3870 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:04:38 has no hits.

BO18493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:44 Download gff for BO18493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-PA 1..777 15..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:32 Download gff for BO18493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 15..799 15..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:19 Download gff for BO18493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 15..799 15..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:19 Download gff for BO18493.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20256153..20256938 15..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:32 Download gff for BO18493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20256153..20256938 15..800 99   Plus

BO18493.5prime Sequence

804 bp (757 high quality bases) assembled on 2006-10-13

> BO18493.5prime
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGGTGGCAAACTTTC
TAGA

BO18493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-PA 777 CG17571-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-RB 1205 CG17571-RB 263..1033 17..787 3855 100 Plus
CG17571-RA 965 CG17571-RA 23..793 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20256160..20256930 787..17 3855 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:05:05 has no hits.

BO18493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:23:45 Download gff for BO18493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-PA 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:37 Download gff for BO18493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 15..800 9..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:21 Download gff for BO18493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 15..800 9..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:21 Download gff for BO18493.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20256153..20256938 9..795 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:37 Download gff for BO18493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20256153..20256938 9..795 99   Minus

BO18493.complete Sequence

808 bp assembled on 2006-10-11

GenBank Submission: FJ634440

> BO18493.complete
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGTTGGCAAGCTTTC
TAGACCAT

BO18493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-RB 777 CG17571-PB 1..774 17..790 3870 100 Plus
CG17571-RA 777 CG17571-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-RB 1205 CG17571-RB 263..1036 17..790 3870 100 Plus
CG17571-RA 965 CG17571-RA 23..796 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20256157..20256930 790..17 3870 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:53:44 has no hits.

BO18493.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:33 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:54 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 98..882 9..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:43 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 23..796 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:33 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 98..882 9..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:33 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
CG17571-RA 23..796 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:33 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20256155..20256930 17..792 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:43 Download gff for BO18493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20256155..20256930 17..792 99   Minus

BO18493.pep Sequence

Translation from 16 to 808

> BO18493.pep
MNRLLLSVVALVALAASCHGNPGLDFPFGRIVNGEDVDIENYPYQVSVQT
TKGSHFCGGSLIDSETVLTAAHCMQSYAASELQVRVGSTSRSSGGEVVTV
RAFKYHEGYNSKLMINDVAIIKLSSPVRQTSKIRAIELADSEAVSGTNAV
VSGWGTTCFLFCSSPDTLQKVEVDLLHYKDCAADTYNYGSDSILETMVCA
TGEKKDACQGDSGGPLVADNKLVGVVSWGSGCAWTGYPGVYADVASLRSW
IVDTTDSLASFLDH

BO18493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17571-PB 258 CG17571-PB 1..258 1..258 1345 100 Plus
CG17571-PA 258 CG17571-PA 1..258 1..258 1345 100 Plus
thetaTry-PA 262 CG12385-PA 1..262 1..258 666 51.9 Plus
alphaTry-PA 256 CG18444-PA 1..256 4..258 644 51.3 Plus
CG30025-PA 253 CG30025-PA 1..251 4..253 634 50.8 Plus